mRNA_P-canaliculata_contig101977.291.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A2E2B8T6_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B8T6_9BACT) HSP 1 Score: 76.6 bits (187), Expect = 4.890e-13 Identity = 65/195 (33.33%), Postives = 88/195 (45.13%), Query Frame = 1 Query: 1 GGEQDDTWLASTYPHRENGD-PSNEWVWGRITSLTGGSFHVEDFDARLPIEDTFAVGYPNVDDTGDDRFDFNIPLFGLQADQERNPDVSPPAA------------------PLLVDADGDGVPDSRFERAPLAVLGGIEYFMAVRVVDLASMLNLNTAGSSADSGGNQDP-TDPPRARHPGDLDAGQFFGLNQPS 525 GG DDTWLAS+ P ++ D + VW IT+L G RLP A G P+ D +P L A + D + P + VDADGDG+ DS++ AP+ + G+ Y MAVR+VD +S LN+NTA S D T+ P +P +LD G F+ PS Sbjct: 119 GGVLDDTWLASSEPVFDHSDYTAGTPVWQHITNLNG-------IFLRLPQT---AAGKPSRPD--------ELPANNLVAASQWRRDTAVPIEGGATKNYLDAGGADSDYQDIGVDADGDGILDSKWTWAPIRQISGVSYVMAVRIVDNSSKLNINTALSQVGGSNAYDSYTNAPAWTNPSELDLGNFYFSYSPS 295
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A7X0H8Z9_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H8Z9_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 5.720e-12 Identity = 62/184 (33.70%), Postives = 81/184 (44.02%), Query Frame = 1 Query: 1 GGEQDDTWLASTYPHRENGDPSNEWVWGRITSLTG------GSFHVEDFDA-RLPIEDTFAVGYPNVDDTGDDRFDFNIPLFGLQADQERNPDVSPPAAPLLVDADGDGVPDSRFERAPLAVLGGIEYFMAVRVVDLASMLNLNTAGSSADSGGNQD---------PTDPPRARHPGDLDAGQF 504 GG D+ WLAS+ P G P W IT L G G + A P E + + V G N ++ D + P LLVDADGDGVPDSR+ A + V+ G Y MAVR++DL+ +NLNTA S D+ D PR P ++D G+F Sbjct: 136 GGHLDNKWLASSSPSDLGGTP----YWENITDLNGVFLSAAGHSDLTSLAAGSAPTESP--INHAGVATPGMSNVSINT---NVRHTLPAPADFADPTLSLLVDADGDGVPDSRWAWATIPVIEGKAYTMAVRIIDLSGRINLNTATSPLDNTARYDYETSTTTVASEHAPRWDTPAEIDLGRF 310
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A2D5Z010_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5Z010_9PLAN) HSP 1 Score: 62.4 bits (150), Expect = 4.120e-8 Identity = 60/186 (32.26%), Postives = 83/186 (44.62%), Query Frame = 1 Query: 1 GGEQDDTWLASTYPHRENGDPSNEWVWGRITSLTGGSFHVEDFDARLP-------IEDTFAVGYPNVDDTGDDRFDFNI-PLFGLQADQERNPDVSPPAAPLLVDADGDGVPDSRFERAPLAVLGGIEYFMAVRVVDLASMLNLNTAGSSADSGGNQDPT-DPPRARHPGDLDAGQF---FGLNQP 522 GG DD WLAS+ P D W IT+LTG + D P +++ A G DT D I P G + P + VDAD DG+ DSR+ A L +G ++Y AV + D ++M+NLNT + + +GG D + + PR P LD +F LN P Sbjct: 148 GGRHDDMWLASSAPI----DDLGVMTWPHITNLTGIFLRLPDIGTSKPNNPEEHFVDNPMAGGAFLGVDT-----DLKIIPAGGRSLSSGDTSNWQP----IGVDADRDGIRDSRWTWAALPRVGNVQYVAAVIIRDNSAMVNLNTVRALSTTGGVYDASVEAPRWVDPTSLDGARFVEELDLNPP 320
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A7T5CIL2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7T5CIL2_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 7.720e-8 Identity = 48/156 (30.77%), Postives = 75/156 (48.08%), Query Frame = 1 Query: 16 DTWLASTYPHRENGDPSNEW---------VWGRITSLTGGSFHVEDFDARLPIEDTFAVGYPNVDDTGDDRFDFNIPLFGLQADQERNPDVSPPAAPLL-----------VDADGDGVPDSRFERAPLAV--LGGIEYFMAVRVVDLASMLNLNTA 417 D +LAST P E G N W +W +T+++G + ++ + + ++ D D +D G + + DV+ P LL VD D DG+PD+R++ AP V +GG +Y MA+RVVDL S++N+NTA Sbjct: 149 DHYLASTIP--EIGFGGNSWLARIDSQDHIWPHLTNISGAWLDLPVYNPDPTLAIRYKRPSEHLIDADDTEYD------GYNVTELNSRDVNIPFDFLLQSAGTAWQRRGVDTDSDGIPDARWQWAPEGVRDIGGRKYVMALRVVDLNSLININTA 296
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A517YUL0_9BACT (Uncharacterized protein n=2 Tax=Poriferisphaera corsica TaxID=2528020 RepID=A0A517YUL0_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 1.930e-7 Identity = 49/152 (32.24%), Postives = 75/152 (49.34%), Query Frame = 1 Query: 16 DTWLASTYPH--------RENGDPSNEWVWGRITSLTGGSFHVEDFDA--------RLPIEDTF-AVGYPNVDDTGDDRFDFNIPLFGLQADQERNPDVSPPAAPLLVDADGDGVPDSRFERAPLAV--LGGIEYFMAVRVVDLASMLNLNT 414 D +LAST P +N D S++ +W +T++TG + ++ R P E + Y T D D N+ + L R+ D P A D DGDG+PD+R++ P V +GG +Y MA+R+VDL S++N+NT Sbjct: 153 DHYLASTMPEIGFYGSSELDNID-SSDHIWPHLTNITGIWLDLPVYNPDPSLAVEYRRPFETAIDSDNYSGSPSTSRDNRDTNVDMEYLL--DSRSADFMPRGA----DTDGDGIPDARWQWVPEGVRDIGGRKYVMALRIVDLNSLVNVNT 297
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A7G9P112_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9P112_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 1.570e-6 Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 289 DADGDGVPDSRFERAPLAVLGGIEYFMAVRVVDLASMLNLNTAGSSADSGG-----NQDP--TDPPRARHPGDLDAG----QFFGLNQPSTP 531 DADGDG+ DS ++ AP+ + GI Y +AVR +DL+SM+NLN A S D+ N D T+ R +P D+DAG +F L P P Sbjct: 148 DADGDGLFDSIWQPAPIPIFNGISYRVAVRTIDLSSMVNLNVATSQVDASTGAYDTNSDAAATEASRWLNPCDIDAGGMMFRFRTLTSPPLP 239 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101977.291.1 >prot_P-canaliculata_contig101977.291.1 ID=prot_P-canaliculata_contig101977.291.1|Name=mRNA_P-canaliculata_contig101977.291.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=179bp GGEQDDTWLASTYPHRENGDPSNEWVWGRITSLTGGSFHVEDFDARLPIEback to top mRNA from alignment at P-canaliculata_contig101977:389..991- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101977.291.1 ID=mRNA_P-canaliculata_contig101977.291.1|Name=mRNA_P-canaliculata_contig101977.291.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at P-canaliculata_contig101977:389..991- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101977:389..991- >mRNA_P-canaliculata_contig101977.291.1 ID=mRNA_P-canaliculata_contig101977.291.1|Name=mRNA_P-canaliculata_contig101977.291.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at P-canaliculata_contig101977:389..991- (Pelvetia canaliculata dioecious)back to top |