mRNA_P-canaliculata_contig10197.289.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10197.289.1
Unique NamemRNA_P-canaliculata_contig10197.289.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10197.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10197contigP-canaliculata_contig10197:6381..6848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.853826-CDS-P-canaliculata_contig10197:6380..66981622815591.853826-CDS-P-canaliculata_contig10197:6380..6698Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10197 6381..6698 +
1693494154.7414477-CDS-P-canaliculata_contig10197:6380..66981693494154.7414477-CDS-P-canaliculata_contig10197:6380..6698Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10197 6381..6698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.8658087-UTR-P-canaliculata_contig10197:6698..68481622815591.8658087-UTR-P-canaliculata_contig10197:6698..6848Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10197 6699..6848 +
1693494154.7515614-UTR-P-canaliculata_contig10197:6698..68481693494154.7515614-UTR-P-canaliculata_contig10197:6698..6848Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10197 6699..6848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10197.289.1prot_P-canaliculata_contig10197.289.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10197 6381..6698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10197.289.1

>prot_P-canaliculata_contig10197.289.1 ID=prot_P-canaliculata_contig10197.289.1|Name=mRNA_P-canaliculata_contig10197.289.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=106bp
PGNGFDRLGGVLRLLERSWVYQAVGLPEFLANLYIRAAPSSVRVPGRNRA
ADFSASPQTIVYFRNSWFRVPGRNPAVDFSASPQTITYFRRANLWYDGTD
VFDVK*
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mRNA from alignment at P-canaliculata_contig10197:6381..6848+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10197.289.1 ID=mRNA_P-canaliculata_contig10197.289.1|Name=mRNA_P-canaliculata_contig10197.289.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=468bp|location=Sequence derived from alignment at P-canaliculata_contig10197:6381..6848+ (Pelvetia canaliculata dioecious)
CCTGGAAATGGCTTCGATCGCCTTGGAGGAGTGCTCCGCTTACTCGAACG
TAGTTGGGTGTACCAGGCGGTAGGCCTGCCAGAGTTTCTCGCGAATCTCT
ACATACGTGCAGCCCCAAGCAGTGTACGGGTTCCAGGACGAAATCGGGCG
GCGGATTTTTCAGCCTCTCCTCAAACGATAGTATATTTTAGGAACAGCTG
GTTTCGGGTTCCAGGACGAAATCCGGCGGTGGATTTTTCGGCCTCTCCTC
AAACGATAACATATTTTAGGAGGGCAAATCTTTGGTATGATGGGACAGAT
GTTTTCGACGTTAAATAGGCGGTAAAAAAAGGGGAAAAAGAGGGGAGGAA
AGGAGAGACGGCGGAAGCGGGGCTTACATTTTTAACTCGTCTGTACGTTG
TGCGGCCCCGAATCGGCCAAAACTAAAGCACGGCAAGAAGCCTACCGTAT
ATACATGCGTTTTGTTCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10197:6381..6848+

>mRNA_P-canaliculata_contig10197.289.1 ID=mRNA_P-canaliculata_contig10197.289.1|Name=mRNA_P-canaliculata_contig10197.289.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at P-canaliculata_contig10197:6381..6848+ (Pelvetia canaliculata dioecious)
CCTGGAAATGGCTTCGATCGCCTTGGAGGAGTGCTCCGCTTACTCGAACG
TAGTTGGGTGTACCAGGCGGTAGGCCTGCCAGAGTTTCTCGCGAATCTCT
ACATACGTGCAGCCCCAAGCAGTGTACGGGTTCCAGGACGAAATCGGGCG
GCGGATTTTTCAGCCTCTCCTCAAACGATAGTATATTTTAGGAACAGCTG
GTTTCGGGTTCCAGGACGAAATCCGGCGGTGGATTTTTCGGCCTCTCCTC
AAACGATAACATATTTTAGGAGGGCAAATCTTTGGTATGATGGGACAGAT
GTTTTCGACGTTAAATAGCCTGGAAATGGCTTCGATCGCCTTGGAGGAGT
GCTCCGCTTACTCGAACGTAGTTGGGTGTACCAGGCGGTAGGCCTGCCAG
AGTTTCTCGCGAATCTCTACATACGTGCAGCCCCAAGCAGTGTACGGGTT
CCAGGACGAAATCGGGCGGCGGATTTTTCAGCCTCTCCTCAAACGATAGT
ATATTTTAGGAACAGCTGGTTTCGGGTTCCAGGACGAAATCCGGCGGTGG
ATTTTTCGGCCTCTCCTCAAACGATAACATATTTTAGGAGGGCAAATCTT
TGGTATGATGGGACAGATGTTTTCGACGTTAAATAG
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