mRNA_P-canaliculata_contig10189.274.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Match: D7FQ86_ECTSI (EamA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ86_ECTSI) HSP 1 Score: 306 bits (784), Expect = 1.150e-101 Identity = 155/203 (76.35%), Postives = 174/203 (85.71%), Query Frame = 1 Query: 1 TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDGTPPNIGDLWSVMAAATSAMFILRLERYSGRCDASRLNSANLWVTSGLCGVWAGMGFGKNAWEITSGRVDGGAALDGLRSQGALIAYLAVVTTALTNWLQALGQRSVPAERAAVIYAMDPVYAAGFAFLLLGETLGTAGIAGASIITGAALWSQ 609
T SRSAFLLYLNVKLVPFFAFVLEGR I TW++AFLAF GT+LLSSDGTPPN+GD WSV+AAATSAMFILRLE+YSG CD S+LNSANLW+T+GLCG WA AWE+T VD AL+G+++Q LI YLAVVTTALTNW+QA+GQRSVPAERAA+IYAMDPVYAAGFA+LLLGETLG AG+ GA IITGAALWSQ
Sbjct: 136 TASRSAFLLYLNVKLVPFFAFVLEGRRISTPTWISAFLAFVGTVLLSSDGTPPNLGDFWSVLAAATSAMFILRLEKYSGSCDPSQLNSANLWITAGLCGAWA-------AWEVTVRGVDVSMALEGIQAQAPLIGYLAVVTTALTNWMQAVGQRSVPAERAAIIYAMDPVYAAGFAYLLLGETLGPAGLVGAGIITGAALWSQ 331
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Match: A0A6H5KE35_9PHAE (EamA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE35_9PHAE) HSP 1 Score: 305 bits (782), Expect = 1.880e-99 Identity = 154/203 (75.86%), Postives = 175/203 (86.21%), Query Frame = 1 Query: 1 TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDGTPPNIGDLWSVMAAATSAMFILRLERYSGRCDASRLNSANLWVTSGLCGVWAGMGFGKNAWEITSGRVDGGAALDGLRSQGALIAYLAVVTTALTNWLQALGQRSVPAERAAVIYAMDPVYAAGFAFLLLGETLGTAGIAGASIITGAALWSQ 609
T SRSAFLLYLNVKLVPFFAFVLEGR I TW++AFLAF GT+LLSSDGTPPN+GD WSV+AAATSAMFILRLE+YSG CD S+LNSANLW+T+GLCG WA AWE+T+ V+ AL+G+++Q LI YLAVVTTALTNW+QA+GQRSVPAERAA+IYAMDPVYAAGFA+LLLGETLG AG+ GA IITGAALWSQ
Sbjct: 280 TASRSAFLLYLNVKLVPFFAFVLEGRRISAPTWISAFLAFVGTVLLSSDGTPPNLGDFWSVLAAATSAMFILRLEKYSGSCDPSQLNSANLWITAGLCGAWA-------AWEVTTRGVNFSVALEGVQAQAPLIGYLAVVTTALTNWMQAVGQRSVPAERAAIIYAMDPVYAAGFAYLLLGETLGPAGLVGAGIITGAALWSQ 475
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Match: A0A0G4I7K5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I7K5_9ALVE) HSP 1 Score: 205 bits (521), Expect = 1.150e-61 Identity = 115/212 (54.25%), Postives = 146/212 (68.87%), Query Frame = 1 Query: 1 TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDGTPPNIGDLWSVMAAATSAMFILRLERYSGRCDASRLNSANLWVTSGLCGVWAGMGFGKNAWEITSGRVDGGAALD---------GLRSQGALIAYLAVVTTALTNWLQALGQRSVPAERAAVIYAMDPVYAAGFAFLLLGETLGTAGIAGASIITGAALWSQ 609
+ SRSAFLLYLNVK VPFFA VL GR I + TWV+A LA GT LLS+DG+PP GDLWS+ AAA SA+FILRLE +G+ A+ LN+A+L+ +G CGVW + AW +G G L+ G + G + YL VVTTAL+N++Q +GQR VPAE AA+I+A DPV+AA FA+L LGETLG G+AGA++I GAA+ Q
Sbjct: 142 SASRSAFLLYLNVKFVPFFARVLLGRDISLATWVSALLAVAGTFLLSNDGSPPVEGDLWSIAAAAASAIFILRLEGAAGKFPAAALNAASLFAVAGFCGVWLVADTFREAWRDGAGMPKLGVQLERWKGELSGPGRETAGEAVVYLGVVTTALSNFIQTVGQRRVPAETAALIFATDPVWAALFAYLWLGETLGAQGLAGAALILGAAVSQQ 353
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Match: A0A835YRT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT8_9STRA) HSP 1 Score: 198 bits (503), Expect = 5.060e-59 Identity = 110/203 (54.19%), Postives = 136/203 (67.00%), Query Frame = 1 Query: 1 TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDGTPPNIGDLWSVMAAATSAMFILRLERYSGRCDASRLNSANLWVTSGLCGVWAGMGFGKNAWEITSGRVDGGAALDGLRSQGALIAYLAVVTTALTNWLQALGQRSVPAERAAVIYAMDPVYAAGFAFLLLGETLGTAGIAGASIITGAALWSQ 609
T SRSAFLLYLNVKLVP F+FVL GR + W A A GT LL DG+PPNIGD WS+ AAA SAM+ILRLE+++ C+ + L+ A LW T+ LC +W + N D A L L +AYL++V TA T WLQA+GQR +PAERAA+IYAMDPVYAA FA+L LGETLG G+ GA +I+ AA+ +Q
Sbjct: 131 TVSRSAFLLYLNVKLVPAFSFVLNGRRSAWSVWAGAAAAVAGTCLLCGDGSPPNIGDAWSLAAAAASAMYILRLEKHASTCNPALLSRAALWTTAFLCAIWVCVEAAYND------DFDPQAVLQALTHTAPQLAYLSIVATACTTWLQAVGQRVIPAERAALIYAMDPVYAAIFAYLFLGETLGPQGVVGAGMISIAAILNQ 327
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Match: A0A7S1U884_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U884_9STRA) HSP 1 Score: 178 bits (452), Expect = 6.390e-53 Identity = 109/207 (52.66%), Postives = 135/207 (65.22%), Query Frame = 1 Query: 1 TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDGTPPNIGDLWSVMAAATSAMFILRLERYSGRCDAS-RLNSANLWVTSGLCGVWAG--MGFGKNAWEITSGRVDGGAALDGLRSQG-ALIAYLAVVTTALTNWLQALGQRSVPAERAAVIYAMDPVYAAGFAFLLLGETLGTAGIAGASIITGAALWSQ 609
T SRS FLLYLNVK+VP + VL R + TW +A +A +GT LLS DG PPN GD WS+MAA SAMFILRL+ + G+ +S L SA TS C VWA + G +A ++ GA + L A I YL +VTTA T+ LQALGQ V ERAA+IYA DPV+ AGFA+LLLGETLG G+ GA++I+GAA+ SQ
Sbjct: 16 TASRSCFLLYLNVKIVPVLSAVLFRRQVSALTWTSAAIAVFGTTLLSYDGGPPNAGDFWSIMAAVASAMFILRLDTHVGKFSSSLSLTSALTGATSLYCLVWAACELLLGASAGSLSEVPARIGAEVAALAQDSPAQILYLGLVTTAFTSVLQALGQSKVSPERAALIYAADPVWGAGFAYLLLGETLGVNGLIGAALISGAAIGSQ 222
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Match: A0A4D9DED0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DED0_9STRA) HSP 1 Score: 184 bits (467), Expect = 5.540e-52 Identity = 116/210 (55.24%), Postives = 139/210 (66.19%), Query Frame = 1 Query: 1 TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDG-TPPNIGDLWSVMAAATSAMFILRLERYSGRCDASR---LNSANLWVTSGLCGVWAG----MGFGKNAWEITSGRVDGGAALDGLRSQGALIAYLAVVTTALTNWLQALGQRSVPAERAAVIYAMDPVYAAGFAFLLLGET--LGTAGIAGASIITGAAL 600
+ SRS FLLYLNVKLVP FA++L GR + V A LAF GT LLS DG PN+GD WS+ AAA SAMFILRLE + +R LNSA LWVT+GLC VWAG MG+G + G G D LR + I +L VV +AL NW+Q LGQR VPAE+AA+IYA+DPVY A FA LLLGE+ LGT G GA+++T AA+
Sbjct: 290 SASRSGFLLYLNVKLVPLFAWLLLGRRPSLDVVVFALLAFVGTALLSVDGGRMPNVGDAWSLAAAAASAMFILRLEGAAKAYSLTRAKELNSATLWVTTGLCAVWAGVEAFMGYGGEGGD---GGGLGVVFTDLLREEWPQIVFLGVVASALCNWIQTLGQREVPAEKAALIYALDPVYGAVFARLLLGESEALGTMGYTGAALVTSAAV 496
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Match: W7U530_9STRA (Permease of the drug metabolite transporter superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U530_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.070e-51 Identity = 116/210 (55.24%), Postives = 139/210 (66.19%), Query Frame = 1 Query: 1 TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDG-TPPNIGDLWSVMAAATSAMFILRLERYSGRCDASR---LNSANLWVTSGLCGVWAG----MGFGKNAWEITSGRVDGGAALDGLRSQGALIAYLAVVTTALTNWLQALGQRSVPAERAAVIYAMDPVYAAGFAFLLLGET--LGTAGIAGASIITGAAL 600
+ SRS FLLYLNVKLVP FA++L GR + V A LAF GT LLS DG PN+GD WS+ AAA SAMFILRLE + +R LNSA LWVT+GLC VWAG MG+G + G G D LR + I +L VV +AL NW+Q LGQR VPAE+AA+IYA+DPVY A FA LLLGE+ LGT G GA+++T AA+
Sbjct: 309 SASRSGFLLYLNVKLVPLFAWLLLGRRPSLDVVVFALLAFAGTALLSVDGGRMPNVGDAWSLAAAAASAMFILRLEGAAKAYSLTRAKELNSATLWVTTGLCAVWAGLEALMGYGGEGGD---GGGLGVVFTDLLRDEWPQIVFLGVVASALCNWIQTLGQREVPAEKAALIYALDPVYGAVFARLLLGESEALGTMGYTGAALVTSAAV 515
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Match: M1VB48_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VB48_CYAM1) HSP 1 Score: 179 bits (454), Expect = 8.070e-51 Identity = 103/203 (50.74%), Postives = 131/203 (64.53%), Query Frame = 1 Query: 1 TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDGTPPNIGDLWSVMAAATSAMFILRLERYSGRCDASRLNSANLWVTSGLCGVWAGMGFGKNAWEITSGRVDGGAALDGLRSQGALIAYLAVVTTALTNWLQALGQRSVPAERAAVIYAMDPVYAAGFAFLLLGETLGTAGIAGASIITGAALWSQ 609
+ SRS+FLLYLNVK+VPF A VL R IP TW+ A +A +GT++LS DG PPN GD WSV AA SAMFILRLER + + + +N+ +L + L +W+ F + + + G AA I YL + TAL+ LQA GQ + AERAA+IYA+DPVYAA FA+LLLGETLG GI GA+I+ AAL SQ
Sbjct: 232 SASRSSFLLYLNVKIVPFLAAVLLRRRIPRVTWLAATIALFGTLMLSFDGAPPNAGDAWSVAAAVASAMFILRLERVASQMPPATMNALSLTTVTILATLWSAFRFDDSGRPVFDWAMLGSAAQ---HITDPAILYLGLAATALSGLLQAFGQEHISAERAAIIYALDPVYAAAFAYLLLGETLGPRGILGAAIVFIAALLSQ 431
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Match: R7QKU6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKU6_CHOCR) HSP 1 Score: 178 bits (451), Expect = 1.100e-50 Identity = 102/212 (48.11%), Postives = 138/212 (65.09%), Query Frame = 1 Query: 1 TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDGTPPNIGDLWSVMAAATSAMFILRLERYSGRCDASRLNSANLWVTSGLCGVWA---------GMGFGKNAWEITSGRVDGGAALDGLRSQGALIAYLAVVTTALTNWLQALGQRSVPAERAAVIYAMDPVYAAGFAFLLLGETLGTAGIAGASIITGAALWSQ 609
T +RS FLLYLNVKLVP A +L GR I + W +A LA GT+LL+ DG+PP +GD WSV AAA SAMFI+R+E + + + +++ + + L GVWA + + A ++ +G V G A + YL +VTTAL+N+LQ +GQ+ +PAERAAV+YA+DPVY A FA+LLLGETLG GIAGA ++T AA+WS
Sbjct: 150 TAARSGFLLYLNVKLVPLLARLLYGRRIAPSVWASAALALAGTVLLTYDGSPPVVGDFWSVAAAAASAMFIVRMECAAATAEPAAVSAVAIGGVAALSGVWAVLDSMWAAPALSGVELAKQVATGLVPGSP------ETLAGVLYLGLVTTALSNYLQTVGQKKIPAERAAVLYALDPVYGAMFAYLLLGETLGAQGIAGAMLVTIAAVWSN 355
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Match: A0A0G4GUF2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUF2_VITBC) HSP 1 Score: 176 bits (447), Expect = 1.030e-49 Identity = 112/224 (50.00%), Postives = 137/224 (61.16%), Query Frame = 1 Query: 1 TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDGTPPNIGDLWSVMAAATSAMFILRLERYSGRCDASRLNSANLWVTSGLCGVWAGM------------GFGKNAWEITSG------RVDGGAALDGLRSQGALIA---YLAVVTTALTNWLQALGQRSVPAERAAVIYAMDPVYAAGFAFLLLGETLGTAGIAGASIITGAALWSQ 609
T SRSAFLLYLNVK VPF A +L GR I TW++A AF GT LLSSDG+PPNIGDLWSV AA SAMFILRLE + + A LN+ +L + LC VWA + G A E+ G +G D LR G + YL +VTTA+ N++Q +GQR V AERAA+IY++DP++ A FA LLLGETLG G GA +I AA+ Q
Sbjct: 208 TASRSAFLLYLNVKFVPFLAALLFGRHISAGTWLSALTAFAGTALLSSDGSPPNIGDLWSVAAAMASAMFILRLEAAARKYRAVDLNATSLSTVAVLCLVWAAVTVGYPLLAGGHHGHSDVAKELLDGIRTALVSEEGSNRADVLRDVGRQVGAALYLGIVTTAICNFIQTVGQRRVSAERAAIIYSLDPLWGAIFANLLLGETLGAQGYVGAGLILLAAVSQQ 431 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10189.274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10189.274.1 >prot_P-canaliculata_contig10189.274.1 ID=prot_P-canaliculata_contig10189.274.1|Name=mRNA_P-canaliculata_contig10189.274.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=203bp TTSRSAFLLYLNVKLVPFFAFVLEGRSIPITTWVTAFLAFYGTILLSSDGback to top mRNA from alignment at P-canaliculata_contig10189:3598..4596+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10189.274.1 ID=mRNA_P-canaliculata_contig10189.274.1|Name=mRNA_P-canaliculata_contig10189.274.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at P-canaliculata_contig10189:3598..4596+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10189:3598..4596+ >mRNA_P-canaliculata_contig10189.274.1 ID=mRNA_P-canaliculata_contig10189.274.1|Name=mRNA_P-canaliculata_contig10189.274.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at P-canaliculata_contig10189:3598..4596+ (Pelvetia canaliculata dioecious)back to top |