mRNA_P-canaliculata_contig10188.273.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI) HSP 1 Score: 196 bits (499), Expect = 3.170e-60 Identity = 92/151 (60.93%), Postives = 109/151 (72.19%), Query Frame = 1 Query: 1 LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPGAPYPLYGAQKVKTTTMMGKTATQEVSL 453 + VALNA QY S +CGAC+EG SG+G+G+NPI +FKA++ DKCPEC GDLDFS SGDGRWDI WKFV CPG +T SF+ ++ YYWK+QPRGT TPVV LTVDG S +T DN FEV GAQ V TTT+ G T T EVS+ Sbjct: 137 IPVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGEET-SFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRTTDNHFEVHNDGAAWSGAQTVVTTTVSGVTETAEVSV 286
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: D8LHU1_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI) HSP 1 Score: 183 bits (464), Expect = 9.020e-56 Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 1 Query: 1 LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPGAPYPLYGAQKVKTTTMMGKTATQEVSL 453 + VALN QY S +CGACIEGEG G G G +P+ G+FKAYV D+CPEC GDLDF+ GDGRWDISW FV C G +F+FEGS+E+YWKIQPRG ++PV L ++G +++DNFF + G P+ G Q+V T T++ K Q V++ Sbjct: 72 IPVALNDEQYADSYMCGACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWINGDEAERSEDNFFILEGGPFD--GEQEVHTKTVLNKRRRQSVAM 220
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI) HSP 1 Score: 179 bits (453), Expect = 3.770e-51 Identity = 85/151 (56.29%), Postives = 104/151 (68.87%), Query Frame = 1 Query: 7 VALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEV--PGAPYPLYGAQKVKTTTMMGKTATQEVSL 453 VALN QY S +CGAC+EGEG+G G+GS+P+ G+FK ++MDKCPEC+ GDLDF DGRWDI WKFVECP + SF E EYYWKIQPRGT TPV LT+ G + ++TDDN FE+ P P Y Q V TTT+ G E+S+ Sbjct: 346 VALNEPQYGDSLMCGACVEGEGTGGGSGSDPV-GTFKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGD-PWYEPQMVVTTTVGGVVEETEMSV 494
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.190e-47 Identity = 82/150 (54.67%), Postives = 102/150 (68.00%), Query Frame = 1 Query: 7 VALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPG-APYPLYGAQKVKTTTMMGKTATQEVSL 453 VALNAAQY S +CG+C+EGEG+G G G NPI G+FK ++MDKCPEC GDLDF DGRWDI W+FV CPG + + E + YYWKIQPRGT TPV LT+ G + ++TDDN FE+ + P Y Q V TTT+ G E+S+ Sbjct: 383 VALNAAQYGDSLMCGSCVEGEGTGGGGGDNPI-GTFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEVSFKVVEMT-PYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGNPWYEPQMVVTTTVGGVVEETEMSV 530
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A2V3ISL2_9FLOR (Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL2_9FLOR) HSP 1 Score: 161 bits (407), Expect = 2.370e-46 Identity = 72/122 (59.02%), Postives = 90/122 (73.77%), Query Frame = 1 Query: 1 LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEV 366 L VA+N AQY+ S CGAC++ G G G+G+NPI G+FKAYV D+CPEC GD+D SK GDGRW + WKF+ CPG + F+FEGS+ YY K+QPRG KTPV L+V G G+KT DNF+ V Sbjct: 58 LPVAINNAQYENSASCGACLQVTGYGQGSGANPIRGTFKAYVHDRCPECKYGDIDLSKGGDGRWRVHWKFIPCPG-EFVFFLFEGSNRYYLKLQPRGLKTPVSALSVGGQWGTKTQDNFYIV 178
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: F2Z7J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis andersonii TaxID=408198 RepID=F2Z7J0_9FLOR) HSP 1 Score: 159 bits (403), Expect = 8.980e-46 Identity = 71/130 (54.62%), Postives = 94/130 (72.31%), Query Frame = 1 Query: 7 VALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVP---GAPYPL 387 VA+N AQY+ S+ CGAC+ G G G+G+NP+ G+FKAYV D+CPEC GD+D SKSGDGRW + W+F+ CPG + F+FEGS+ +Y K+QPRG KTPV +V+G G+KT DNF+ + G YPL Sbjct: 55 VAINNAQYEESKSCGACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPCPG-EWVFFLFEGSNRFYLKLQPRGLKTPVTYFSVNGQQGTKTQDNFYILQNGGGFRYPL 183
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A1X6NJE1_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJE1_PORUM) HSP 1 Score: 153 bits (386), Expect = 4.850e-44 Identity = 72/138 (52.17%), Postives = 90/138 (65.22%), Query Frame = 1 Query: 7 VALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPGAPYPLYGAQKVKTTT 417 VA++ A Y GS CGAC+ GSG+GAG+NPITG+F AYVMD+CPECA GDLD + GDGRW +SW V CP P F+ EGS+ +Y K+Q RG P ++V GA+ ++T DNFF V A PL V TT Sbjct: 78 VAVSTADYAGSAACGACLRVTGSGDGAGANPITGTFSAYVMDRCPECAAGDLDLATPGDGRWAVSWTVVPCPTAGGAPEFLLEGSNPHYLKVQVRGLPAPAASVSVGGAACARTQDNFFIVATAGPPLEPPLTVTGTT 215
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A2P6NBD6_9EUKA (Endochitinase-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBD6_9EUKA) HSP 1 Score: 140 bits (354), Expect = 7.520e-36 Identity = 67/158 (42.41%), Postives = 101/158 (63.92%), Query Frame = 1 Query: 1 LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGS------KTDDNFFEVP-GAPYPLYGAQKVKTTTMMGKTATQEVS 450 ++VA+ +A + GS CG+CI+ GSG GAGSNP+ G+F A+V D+CP C G LDF+K+GDG WDISWK V+CP G+ + F+GS+E+Y K+Q R +TP+ +++ + +T DNFFE+P G P P+ ++ T+ G+ +S Sbjct: 368 VSVAMVSAYWFGSAACGSCIQITGSGKGAGSNPVKGNFTAFVNDQCPTCVPGGLDFAKNGDGLWDISWKVVDCPVGNSGIYYAFQGSNEWYMKVQARNHRTPLNFISIQDPNTKQYRKMKRTGDNFFELPDGFPVPVKYPAPIQLTSFSGEVLNDAIS 525
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A2P6NBF0_9EUKA (MAP/microtubule affinity-regulating kinase 3-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBF0_9EUKA) HSP 1 Score: 140 bits (354), Expect = 7.700e-36 Identity = 67/158 (42.41%), Postives = 101/158 (63.92%), Query Frame = 1 Query: 1 LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGS------KTDDNFFEVP-GAPYPLYGAQKVKTTTMMGKTATQEVS 450 ++VA+ +A + GS CG+CI+ GSG GAGSNP+ G+F A+V D+CP C G LDF+K+GDG WDISWK V+CP G+ + F+GS+E+Y K+Q R +TP+ +++ + +T DNFFE+P G P P+ ++ T+ G+ +S Sbjct: 761 VSVAMVSAYWFGSAACGSCIQITGSGKGAGSNPVKGNFTAFVNDQCPTCVPGGLDFAKNGDGLWDISWKVVDCPVGNSGIYYAFQGSNEWYMKVQARNHRTPLNFISIQDPNTKQYRKMKRTGDNFFELPDGFPVPVKYPAPIQLTSFSGEVLNDAIS 918
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A2V0PJ07_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PJ07_9CHLO) HSP 1 Score: 125 bits (313), Expect = 9.110e-33 Identity = 58/151 (38.41%), Postives = 95/151 (62.91%), Query Frame = 1 Query: 7 VALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFK-AYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTV--DGA--SGSKTDDNFFEVPGAPYPLYGA---QKVKTTTMMGKT 432 +A+NAAQY G+ +CG C+ G+G GAG NPI+ ++ ++ D+CPECA G +D K+GDGRW + W+ V+CP GS ++ ++G ++YY K+Q + P+ +L + +GA T DN+FEV G +G+ ++ T+++G T Sbjct: 62 LAINAAQYTGTSICGLCVRFRGTGGGAGGNPISSDWQPGFICDECPECAFGSIDLQKNGDGRWKVEWEPVQCPVGSSNFAYGYQGGNDYYKKVQVANARAPISKLEIKRNGAWQQAVATIDNYFEVHGYVADFWGSGGCASIRVTSILGDT 212 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10188.273.1 >prot_P-canaliculata_contig10188.273.1 ID=prot_P-canaliculata_contig10188.273.1|Name=mRNA_P-canaliculata_contig10188.273.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=152bp LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECAback to top mRNA from alignment at P-canaliculata_contig10188:10900..11707- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10188.273.1 ID=mRNA_P-canaliculata_contig10188.273.1|Name=mRNA_P-canaliculata_contig10188.273.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=808bp|location=Sequence derived from alignment at P-canaliculata_contig10188:10900..11707- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10188:10900..11707- >mRNA_P-canaliculata_contig10188.273.1 ID=mRNA_P-canaliculata_contig10188.273.1|Name=mRNA_P-canaliculata_contig10188.273.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at P-canaliculata_contig10188:10900..11707- (Pelvetia canaliculata dioecious)back to top |