mRNA_P-canaliculata_contig10183.270.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Match: A0A6H5KTD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD1_9PHAE) HSP 1 Score: 283 bits (724), Expect = 3.900e-90 Identity = 142/208 (68.27%), Postives = 171/208 (82.21%), Query Frame = 1 Query: 10 MVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACVADWVIAAPFAMLGSIGVVGGIPNFNKALRKAGIEYFHFTSGQQKSLVGPFQEVTRANQAMQQSQLDSVHSAFKRHVRRYRPSVNVEEVGTGEVWLGLDAAKHRLIDEVGTTMQYLEARMADSQVFVVKPHTPKGVRGSSLLRLLLLGPLAAVGRFAS 633 +VV LES GGEV+EFGL AA+LARL+++GFRLTVCVDK + GGYMMAC+AD + APFAMLGSIGVVGG+ NFNKAL+K G++YF FTSGQ KSLVGPFQEVT+ N+AMQQ Q+D++H+AFK HV RYRPSV++E VGTGE+WLG A + L D+V T M+YL+ RM+D+QVF+VKPH K GSSLLR LL GPLA GRFAS Sbjct: 201 VVVVLESPGGEVTEFGLAAARLARLKDRGFRLTVCVDKVAAS-GGYMMACIADELTTAPFAMLGSIGVVGGMANFNKALKKYGVDYFQFTSGQHKSLVGPFQEVTKENKAMQQKQMDAIHTAFKTHVHRYRPSVDIEAVGTGEIWLGQRAVEMHLADKVTTAMEYLQGRMSDAQVFLVKPHKKKMAAGSSLLRELLFGPLAISGRFAS 407
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Match: D7G353_ECTSI (Putative periplasmic protease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G353_ECTSI) HSP 1 Score: 288 bits (737), Expect = 1.280e-88 Identity = 145/211 (68.72%), Postives = 173/211 (81.99%), Query Frame = 1 Query: 1 TWQMVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACVADWVIAAPFAMLGSIGVVGGIPNFNKALRKAGIEYFHFTSGQQKSLVGPFQEVTRANQAMQQSQLDSVHSAFKRHVRRYRPSVNVEEVGTGEVWLGLDAAKHRLIDEVGTTMQYLEARMADSQVFVVKPHTPKGVRGSSLLRLLLLGPLAAVGRFAS 633 T ++VV LES GGEV+EFGL AA+LARL+++GFRLTVCVDK + GGYM+AC+AD + APFAMLGSIGVVGG+ NFNKAL+K G++YFHFTSGQ KSLVGPFQEVT+ N+AMQQ Q+D++HSAFK HV RYRPSV++E VGTGE+WLG A RL D+V T M+YL+ RM D+QVF+VKPH K GS LLR LLLGPLA GRFAS Sbjct: 570 TDEVVVVLESPGGEVTEFGLAAARLARLKDRGFRLTVCVDKVAAS-GGYMIACIADELTTAPFAMLGSIGVVGGMTNFNKALKKYGVDYFHFTSGQHKSLVGPFQEVTKENKAMQQKQMDAIHSAFKTHVHRYRPSVDIEAVGTGEIWLGQRAVDMRLADKVTTAMEYLQGRMTDAQVFLVKPHKKKMAAGSGLLRELLLGPLAVSGRFAS 779
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Match: A0A7V1FTF3_9GAMM (Protease SohB n=2 Tax=root TaxID=1 RepID=A0A7V1FTF3_9GAMM) HSP 1 Score: 174 bits (440), Expect = 9.750e-50 Identity = 92/179 (51.40%), Postives = 123/179 (68.72%), Query Frame = 1 Query: 7 QMVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACVADWVIAAPFAMLGSIGVVGGIPNFNKALRKAGIEYFHFTSGQQKSLVGPFQEVTRANQAMQQSQLDSVHSAFKRHVRRYRPSVNVEEVGTGEVWLGLDAAKHRLIDEVGTTMQYLEARMADSQVFVV 543 ++VV LESGGG V +GL A++L R+R+ G LTVCVDK + GGYMMAC+AD ++AAPFAMLGSIGVV IPNFN+ LRK I+Y T+G+ K + F E + + Q L+++H FK V RYRPS++VE V TGEVW GL+A ++L DE+ T+ QY+ R+ + VF V Sbjct: 125 EIVVKLESGGGMVHAYGLAASQLTRVRDAGVPLTVCVDKVAAS-GGYMMACIADRILAAPFAMLGSIGVVAQIPNFNRILRKHDIDYEMLTAGEYKRTLTLFGENSEKGREKFQEDLENIHRLFKGFVGRYRPSLDVEAVATGEVWFGLEAVDNQLADEIKTSDQYISQRVGQADVFEV 302
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Match: W8G4T4_9GAMM (Peptidase n=6 Tax=root TaxID=1 RepID=W8G4T4_9GAMM) HSP 1 Score: 174 bits (441), Expect = 1.010e-49 Identity = 87/180 (48.33%), Postives = 124/180 (68.89%), Query Frame = 1 Query: 7 QMVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACVADWVIAAPFAMLGSIGVVGGIPNFNKALRKAGIEYFHFTSGQQKSLVGPFQEVTRANQAMQQSQLDSVHSAFKRHVRRYRPSVNVEEVGTGEVWLGLDAAKHRLIDEVGTTMQYLEARMADSQVFVVK 546 ++VV LESGGG V +G GA++L R+R++G LTVCVD + GGYMMAC+AD ++AAPFA++GSIGVV +PNF+K L+K ++Y FT+G+ K V F E T + Q+ L+ H FK HV+ +RP V++E V TG++W G+ A H+LIDEVGT+ YL A ++ V+ V+ Sbjct: 138 EVVVRLESGGGMVHSYGFGASQLKRIRDRGIHLTVCVDMVAAS-GGYMMACLADRIVAAPFAIIGSIGVVAQLPNFSKVLKKYDVDYELFTAGEYKRTVTMFGENTDKAKEKFQADLEETHDLFKHHVKHHRPRVDIEAVATGDIWYGVQAIDHKLIDEVGTSDDYLVAACDNADVYTVR 316
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Match: A0A558NM97_9GAMM (Protease SohB n=2 Tax=Thalassolituus TaxID=187492 RepID=A0A558NM97_9GAMM) HSP 1 Score: 173 bits (439), Expect = 1.950e-49 Identity = 90/188 (47.87%), Postives = 128/188 (68.09%), Query Frame = 1 Query: 7 QMVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACVADWVIAAPFAMLGSIGVVGGIPNFNKALRKAGIEYFHFTSGQQKSLVGPFQEVTRANQAMQQSQLDSVHSAFKRHVRRYRPSVNVEEVGTGEVWLGLDAAKHRLIDEVGTTMQYLEARMADSQVFVVKPHTPKGVR 570 ++VV LESGGG V +GLGA++L R+R++G LTVCVDK + GGYMMAC+A+ +IAAPFA++GSIGVV +PNFN+ L+K ++Y FT+G+ K V F + + QS L+ H FK+HV+ RP +++E V TG++W G A HRLID+VGT+ YL A A+S V+ V+ K ++ Sbjct: 137 EIVVRLESGGGMVHTYGLGASQLKRIRDRGIPLTVCVDKVAAS-GGYMMACLANRIIAAPFAIVGSIGVVAQLPNFNRLLKKHDVDYELFTAGEYKRTVTMFGHNSAKAKDKFQSDLEDTHELFKQHVKHSRPRIDIEAVATGDIWYGQQALDHRLIDDVGTSDDYLVAACANSDVYSVRYEYKKSLQ 323
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Match: UPI001D010463 (protease SohB n=1 Tax=Pseudomonas sp. FME51 TaxID=2742609 RepID=UPI001D010463) HSP 1 Score: 172 bits (437), Expect = 3.600e-49 Identity = 97/206 (47.09%), Postives = 136/206 (66.02%), Query Frame = 1 Query: 1 TWQMVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACVADWVIAAPFAMLGSIGVVGGIPNFNKALRKAGIEYFHFTSGQQKSLVGPFQEVTRANQAMQQSQLDSVHSAFKRHVRRYRPSVNVEEVGTGEVWLGLDAAKHRLIDEVGTTMQYLEARMADSQVFVVKPHTPKGVR-------GSSLLRLLL 597 T ++VV LESGGG V +GL A++LAR+RE G LTVCVDK + GGYMMAC+AD V+AAPFAMLGSIGVV +PNF++ L+K IEY T+G+ K + F E T + Q L+++H FK+ V RYRP ++++ V TGEVW G +A ++ L DE+ T+ +Y+ R+ + VF V + PK ++ ++L RLLL Sbjct: 134 TDEIVVKLESGGGMVHAYGLAASQLARIREAGVPLTVCVDKVAAS-GGYMMACIADRVLAAPFAMLGSIGVVAQLPNFHQVLKKHDIEYEMLTAGEYKRTLTLFGENTEKGREKFQEDLENIHRLFKQFVARYRPVLDIDSVATGEVWFGSEALENALADELKTSDEYISQRIRQADVFEVHFNRPKRLQDKLSSSVSAALDRLLL 338
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Match: A0A1I6AFY4_9GAMM (Serine protease SohB n=1 Tax=Halopseudomonas formosensis TaxID=1002526 RepID=A0A1I6AFY4_9GAMM) HSP 1 Score: 172 bits (436), Expect = 3.860e-49 Identity = 93/204 (45.59%), Postives = 133/204 (65.20%), Query Frame = 1 Query: 7 QMVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACVADWVIAAPFAMLGSIGVVGGIPNFNKALRKAGIEYFHFTSGQQKSLVGPFQEVTRANQAMQQSQLDSVHSAFKRHVRRYRPSVNVEEVGTGEVWLGLDAAKHRLIDEVGTTMQYLEARMADSQVFVVKPHTPKGVR-------GSSLLRLLL 597 ++V+ LESGGG V +GL A++L R+R+ G LT+CVDK + GGYMMAC+ D V+AAPFAMLGSIGVV +PNF++ L+K ++Y T+G+ K + F E T + Q L+++H FK+ V RYRP +NV+EV TGEVW G +A + L DE+ T+ +Y+ R+ + VF V H PK ++ ++L RLLL Sbjct: 125 EIVLRLESGGGMVHAYGLAASQLTRVRDAGVPLTICVDKVAAS-GGYMMACIGDRVLAAPFAMLGSIGVVAQLPNFHRVLKKHDVDYEMLTAGEYKRTLTLFGENTEKGREKFQEDLENIHRLFKQFVSRYRPVLNVDEVATGEVWFGTEALQKALADEIRTSDEYISQRIRQADVFEVHFHRPKKLQDRLSSTMSAALDRLLL 327
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Match: A0A2G2JIC9_9GAMM (Protease SohB n=1 Tax=Oceanobacter sp. TaxID=2030817 RepID=A0A2G2JIC9_9GAMM) HSP 1 Score: 172 bits (437), Expect = 4.080e-49 Identity = 87/180 (48.33%), Postives = 123/180 (68.33%), Query Frame = 1 Query: 7 QMVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACVADWVIAAPFAMLGSIGVVGGIPNFNKALRKAGIEYFHFTSGQQKSLVGPFQEVTRANQAMQQSQLDSVHSAFKRHVRRYRPSVNVEEVGTGEVWLGLDAAKHRLIDEVGTTMQYLEARMADSQVFVVK 546 ++VV LESGGG V +GL +++L R+R+KG LT+C+D+ + GGYMMAC+AD V+AAPFA++GSIGVV +PNFNK LRK +++ FT+G+ K V F E T + + Q+ L+ H FK HV+ YRP V++E V TG++W G A +LIDEVGT+ YL A + V+ V+ Sbjct: 139 EIVVRLESGGGMVHSYGLASSQLKRIRDKGIHLTICIDRVAAS-GGYMMACLADRVVAAPFAIVGSIGVVAQLPNFNKLLRKNDVDFELFTAGEYKRTVTMFGENTDSAREKFQADLEDTHELFKNHVKHYRPRVDIEAVATGDIWYGQQALDQKLIDEVGTSDDYLVAACERADVYTVR 317
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Match: A0A1H1RUD4_9GAMM (Inner membrane peptidase. Serine peptidase. MEROPS family S49 n=1 Tax=Halopseudomonas xinjiangensis TaxID=487184 RepID=A0A1H1RUD4_9GAMM) HSP 1 Score: 172 bits (435), Expect = 5.440e-49 Identity = 90/185 (48.65%), Postives = 125/185 (67.57%), Query Frame = 1 Query: 7 QMVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACVADWVIAAPFAMLGSIGVVGGIPNFNKALRKAGIEYFHFTSGQQKSLVGPFQEVTRANQAMQQSQLDSVHSAFKRHVRRYRPSVNVEEVGTGEVWLGLDAAKHRLIDEVGTTMQYLEARMADSQVFVVKPHTPK 561 ++VV LESGGG V +GL A++L R+RE G LTVCVDK + GGYMMAC+ D ++AAPFAMLGSIGVV +PNF+K L+K ++Y T+G+ K + F E T + + L+++H FK V RYRP +NV+EV TGEVW G++A + +L DEV T+ +Y+ R+ ++ VF V T K Sbjct: 125 EVVVKLESGGGMVHAYGLAASQLVRIREAGIPLTVCVDKVAAS-GGYMMACIGDRLLAAPFAMLGSIGVVAQLPNFHKILKKHDVDYEMLTAGEYKRTLTVFGENTEKGREKFREDLENIHRLFKNFVSRYRPQLNVDEVATGEVWFGIEAQEIKLADEVQTSDEYITRRVREADVFEVNYVTRK 308
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Match: A0A2E0A2M0_9GAMM (Protease SohB n=2 Tax=Oceanospirillales TaxID=135619 RepID=A0A2E0A2M0_9GAMM) HSP 1 Score: 172 bits (436), Expect = 5.470e-49 Identity = 87/179 (48.60%), Postives = 125/179 (69.83%), Query Frame = 1 Query: 7 QMVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACVADWVIAAPFAMLGSIGVVGGIPNFNKALRKAGIEYFHFTSGQQKSLVGPFQEVTRANQAMQQSQLDSVHSAFKRHVRRYRPSVNVEEVGTGEVWLGLDAAKHRLIDEVGTTMQYLEARMADSQVFVV 543 ++VV LESGGG V +GL A++L R+R+KG LT+C+D+ + GGYMMAC+A+ ++AAPFA++GSIGVV +PNFNK L+K I+Y FT+G+ K + F E T + QS L+ H FK HV+++RP V+++ + TG+VW G+ A +LIDEVGT+ YL + DS VF+V Sbjct: 137 EVVVRLESGGGMVHSYGLAASQLKRIRDKGISLTICIDRVAAS-GGYMMACLANRMVAAPFAIIGSIGVVAQVPNFNKLLKKNDIDYELFTAGEFKRTITMFGENTDKAREKFQSDLEDTHGLFKAHVKQFRPRVDIDAIATGDVWYGIQAIDLKLIDEVGTSDDYLMSACNDSDVFMV 314 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10183.270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10183.270.1 >prot_P-canaliculata_contig10183.270.1 ID=prot_P-canaliculata_contig10183.270.1|Name=mRNA_P-canaliculata_contig10183.270.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=210bp MVVCLESGGGEVSEFGLGAAKLARLREKGFRLTVCVDKASKEAGGYMMACback to top mRNA from alignment at P-canaliculata_contig10183:7848..11457- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10183.270.1 ID=mRNA_P-canaliculata_contig10183.270.1|Name=mRNA_P-canaliculata_contig10183.270.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3610bp|location=Sequence derived from alignment at P-canaliculata_contig10183:7848..11457- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10183:7848..11457- >mRNA_P-canaliculata_contig10183.270.1 ID=mRNA_P-canaliculata_contig10183.270.1|Name=mRNA_P-canaliculata_contig10183.270.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at P-canaliculata_contig10183:7848..11457- (Pelvetia canaliculata dioecious)back to top |