mRNA_P-canaliculata_contig101631.253.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: X5HZS3_BPKP2 (Uncharacterized protein n=1 Tax=Pseudomonas phage KPP25 TaxID=1462608 RepID=X5HZS3_BPKP2) HSP 1 Score: 76.6 bits (187), Expect = 5.830e-16 Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = 1 Query: 1 SFTRNQLRAREYYLQLYKATPRW-ETRARLATIYDRATRLRNFGARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSPFE 270 S +N R+ YY QL+ A P+W IYD A R R+ G VHVDHIVP+ S +VCGLH NLQII N KSN +P PFE Sbjct: 22 SLNKNYRRSVRYYRQLFLAWPKWCADHPGFKKIYDEAARRRSAGEDVHVDHIVPICSKLVCGLHVPWNLQIIGAGPNLKKSNLWWPDHPFE 112
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI0011AF68F8 (hypothetical protein n=1 Tax=Ralstonia mannitolilytica TaxID=105219 RepID=UPI0011AF68F8) HSP 1 Score: 72.4 bits (176), Expect = 1.170e-13 Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 1 Query: 13 NQLRAREYYLQLYKATPRWETRARLATIYDRATRLRNF-GARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264 N+ R R + L +ATP W +R + IY A L G ++HVDHIVPL P+VCGLHC NLQI+ + N K NR +P P Sbjct: 120 NRARRRAHEL---RATPGWASREAILAIYVAARSLEEASGKKMHVDHIVPLQHPLVCGLHCESNLQIVDDLTNRKKGNRHWPDMP 201
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI00117B1259 (hypothetical protein n=1 Tax=Fimbriiglobus ruber TaxID=1908690 RepID=UPI00117B1259) HSP 1 Score: 72.0 bits (175), Expect = 2.010e-13 Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 52 KATPRWETRARLATIYDRATRLR-NFGARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264 +ATP W + Y++ R+ G + HVDHIVPL+SP+VCGLHC NLQI+ E N K NR +P P Sbjct: 142 QATPTWADFTLITAFYEQCARITAETGVKHHVDHIVPLSSPVVCGLHCQNNLQILPEAANKRKGNRIWPDMP 213
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI001D8F42D8 (hypothetical protein n=1 Tax=Paraburkholderia gardini TaxID=2823469 RepID=UPI001D8F42D8) HSP 1 Score: 70.9 bits (172), Expect = 4.790e-13 Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 52 KATPRWETRARLATIYDRATRL-RNFGARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264 KATP W + + IY + RL R G + HVDHIVPL S +VCG+HC NLQ++ EN +KSNR +P P Sbjct: 133 KATPGWANKEAMHAIYAESLRLTRETGIQHHVDHIVPLVSKVVCGMHCEFNLQVLPGLENQSKSNRWWPDMP 204
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: A0A1Y0FK34_RALSL (Uncharacterized protein n=1 Tax=Ralstonia solanacearum TaxID=305 RepID=A0A1Y0FK34_RALSL) HSP 1 Score: 67.8 bits (164), Expect = 4.960e-13 Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 52 KATPRWETRARLATIYDRATRL-RNFGARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264 +A P+W ++ +Y+ A L ++ G + HVDH+VPL S +VCGLH NLQIIT EN +K NR +P P Sbjct: 9 QAIPKWADPKKIKLVYEEALALYKSNGVKYHVDHVVPLISDLVCGLHWEGNLQIITASENRSKGNRHWPDMP 80
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: A0A6M3M5T4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6M3M5T4_9ZZZZ) HSP 1 Score: 67.8 bits (164), Expect = 1.080e-12 Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1 Query: 52 KATPRWETRARLATIYDRATRLR-NFGARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264 +A P W ++A+IY+ A +L G HVDHIVPL S +VCGLHC NLQ++T N +K+N +P P Sbjct: 38 QAVPGWADHGKIASIYEHARQLTLETGEVHHVDHIVPLTSDLVCGLHCEHNLQVLTAFANLSKANHVWPDMP 109
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI0012FCAECB (hypothetical protein n=1 Tax=Curvibacter lanceolatus TaxID=86182 RepID=UPI0012FCAECB) HSP 1 Score: 69.3 bits (168), Expect = 1.980e-12 Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 52 KATPRWETRARLATIYDRATRLRNF-GARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264 ++TP W + + IY ++ L G HVDHIVPL S +VCGLHC NLQII +EN K+NR +P P Sbjct: 137 RSTPLWANKEAIIDIYKKSRELSQATGVEHHVDHIVPLQSDVVCGLHCEANLQIIDAKENIRKNNRWWPDMP 208
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI00114EC397 (HNH endonuclease n=1 Tax=Bordetella hinzii TaxID=103855 RepID=UPI00114EC397) HSP 1 Score: 68.9 bits (167), Expect = 2.860e-12 Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 52 KATPRWETRARLATIYDRATRLRNF-GARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264 +ATP W AR+ Y +R+ G VDHIVPL S IVCGLHC ENLQ++T +EN K N +P P Sbjct: 139 RATPPWADLARINQFYADVAFMRSATGIAYEVDHIVPLQSDIVCGLHCEENLQVLTAKENKVKHNTQWPDMP 210
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: A0A4R6FM78_9SPHN (Uncharacterized protein n=1 Tax=Stakelama pacifica TaxID=517720 RepID=A0A4R6FM78_9SPHN) HSP 1 Score: 68.2 bits (165), Expect = 4.060e-12 Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 31 EYYLQLYKATPRWETRARLATIYDRATRLRNF-GARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFP 255 +Y +ATP W +++A IY+RA+ ++ G R+HVDHIVPL +VCGLHC NLQI+ N AK N P Sbjct: 100 KYKASKLRATPPWANLSKIAAIYERASAIQAATGQRMHVDHIVPLQHELVCGLHCETNLQILPGSLNEAKRNNWSP 175
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI0012D8F65E (hypothetical protein n=1 Tax=Burkholderia territorii TaxID=1503055 RepID=UPI0012D8F65E) HSP 1 Score: 67.8 bits (164), Expect = 5.510e-12 Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 1 Query: 52 KATPRWETRARLATIYDRATRLRNFGAR-VHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264 +ATP+W + ++ Y A RL R HVDH+VPL S IVCGLH NLQ+I EN K NR +P P Sbjct: 117 RATPKWANQDKIEEFYKEAERLSKIHYRHYHVDHVVPLRSKIVCGLHWEGNLQVIPAEENIRKGNRHWPDMP 188 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101631.253.1 >prot_P-canaliculata_contig101631.253.1 ID=prot_P-canaliculata_contig101631.253.1|Name=mRNA_P-canaliculata_contig101631.253.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=92bp SFTRNQLRAREYYLQLYKATPRWETRARLATIYDRATRLRNFGARVHVDHback to top mRNA from alignment at P-canaliculata_contig101631:733..1008+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101631.253.1 ID=mRNA_P-canaliculata_contig101631.253.1|Name=mRNA_P-canaliculata_contig101631.253.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at P-canaliculata_contig101631:733..1008+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101631:733..1008+ >mRNA_P-canaliculata_contig101631.253.1 ID=mRNA_P-canaliculata_contig101631.253.1|Name=mRNA_P-canaliculata_contig101631.253.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig101631:733..1008+ (Pelvetia canaliculata dioecious)back to top |