mRNA_P-canaliculata_contig10138.229.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA) HSP 1 Score: 323 bits (827), Expect = 5.400e-107 Identity = 150/227 (66.08%), Postives = 180/227 (79.30%), Query Frame = 3 Query: 306 AEWTYRRAATDGGKPYGPSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSVALFDDSK 986
AEWTYRR +T+G +PYGPSDW +GYPDCG AQSPI+LAA +VV + + L+F+P+ C + EL F A+ERVWE++F GCS+ + F E YNL+QIHIHSPSEH IGGS +AEIHWVHVKEGT D+LLVVGVLFD + YG+NVE++ LWDVLD G +T F RIYD++P N VFSHYMGSLTTPPCTE V WIVM++P +SKMQLDEFR SVALFDDSK
Sbjct: 40 AEWTYRRTSTNGQQPYGPSDWHKGYPDCGKKAQSPIDLAADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMSKMQLDEFRTSVALFDDSK 266
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA) HSP 1 Score: 249 bits (636), Expect = 4.960e-78 Identity = 122/229 (53.28%), Postives = 162/229 (70.74%), Query Frame = 3 Query: 309 EWTYRRAATDGGKPYGPSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKE---GTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSVALFDDSK 986
+WTYRRA+ +G +PY PSDW GYPDCGG +QSPINL+A+ ++V++T+FNL+ F CA+ EL F AN VWE+ F C+ ++L+F+ Y+L+Q+HIHSPSEH + GSL AEIH VH ++ GT ELLV+GV D ++G NV L+PLWDVL +GA Y+LIP + +SHYMGSLTTPPC+E V W+VM+ PTVI +QLD FR SVA +S+
Sbjct: 48 DWTYRRASHEGERPYSPSDWEIGYPDCGGDSQSPINLSANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSGAKPRGV---INPYELIPSDMAYSHYMGSLTTPPCSEIVRWVVMSTPTVIGDLQLDIFRDSVATATNSQ 273
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI) HSP 1 Score: 249 bits (635), Expect = 7.020e-78 Identity = 116/227 (51.10%), Postives = 151/227 (66.52%), Query Frame = 3 Query: 306 AEWTYRRAATDGGKPYGPSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSVALFDDSK 986
AEWTYR G +PYGP DW+ GYPDC G+ Q+PIN+AA + + FFP C ++EL F ++ VW+V F GC++ L + E YNL+Q HIHSPSEH +GG+ AAEIH VH+K+ T D LLVVG++F+VS YG NVEL+P+W+V+D D F A Y L+P F+ Y GSLTTPPCTE V WI+M+EP +S QLD +R +VAL + SK
Sbjct: 45 AEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSK 271
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE) HSP 1 Score: 175 bits (444), Expect = 3.290e-51 Identity = 81/119 (68.07%), Postives = 96/119 (80.67%), Query Frame = 3 Query: 630 IGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSVALFDDSK 986
IGGS AEIHWVHVK GT D+LLV+GVLFD ++YG+NVE++ LWDVLD G +T F R+YD++P N VFSHYMGSLTTPPCTE V WIVM++P + KMQLDEFR SVALFD+SK
Sbjct: 2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMGKMQLDEFRTSVALFDNSK 120
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI) HSP 1 Score: 127 bits (319), Expect = 3.530e-31 Identity = 79/228 (34.65%), Postives = 109/228 (47.81%), Query Frame = 3 Query: 366 WFQGYPDCGGSAQSPINLA---ASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEG-CSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGT-NVELQPLWD-----------------------VLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSV 965
W YPDC G QSPIN+A +T + F C +L + A+ + W V F+G C ++T N +NL+Q H+HS SEH IGG AEIH+VH L VVGV+ + N+E W+ V T + S SA Y ++P + + +Y+GSLTTPPC+E+VTWIVM E +S QL+ FR +
Sbjct: 2 WGALYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGACMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGL 229
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI) HSP 1 Score: 122 bits (306), Expect = 1.510e-28 Identity = 80/236 (33.90%), Postives = 118/236 (50.00%), Query Frame = 3 Query: 357 PSDWFQGYPDCGGSAQSPINLA---ASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEG-CSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLF----------DVSKYGTNV-----ELQPLWDVLDTGA------------DSTSASFDARI--YDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVSV 965
P W YPDC G QSPIN+A +T + F C +L + A+ + W V F+G C ++T N +NL+Q H+HS SEH IGG AEIH+VH L VVGV+ + +KY ++ + + ++++T A STS S ++ Y ++P + + +Y+GSLTTPPC+E+VTWIVM E +S QL+ FR +
Sbjct: 75 PDMWGYLYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGMCMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNIGNLEFTKYAEHMAYVSGKQKYASEIMETDATMAPAATPSSMASSTSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGL 310
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: A0A7S3XPW5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPW5_HETAK) HSP 1 Score: 119 bits (299), Expect = 3.140e-28 Identity = 77/217 (35.48%), Postives = 108/217 (49.77%), Query Frame = 3 Query: 312 WTYRRAAT--------DGGKPYG--PSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDV----LDTGADSTSASFDARIY-DLIPPNKVFSHYMGSLTTPPCTESVTWIVMNE 917
W Y +A + DG Y P +W + DC G QSPIN+ + S + LQ + L+ + N W+V C + T+N Y LVQ H HSPSE+ IGG AE+H VH + LLV+GV+FDV YG N + W+ + TG S S Y +++P + + H+ GSLTTPPC+E VTWI+M++
Sbjct: 54 WVYNQADSIAAGTDCGDGDTQYACSPENWGEVNRDCEGENQSPINVVMAQKS---KSLSQLQLNKNNEDCDLLYLVDNYHTWKVDMSECDGSYTTTWNGVDYELVQFHFHSPSENTIGGGYFDAEMHLVHADADS--NLLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSSTLDPYTEILPADLSYYHWNGSLTTPPCSEGVTWILMSQ 265
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: A0A7S3XQ34_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ34_HETAK) HSP 1 Score: 119 bits (297), Expect = 8.740e-28 Identity = 71/195 (36.41%), Postives = 104/195 (53.33%), Query Frame = 3 Query: 357 PSDWFQGYPDCGGSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVK-EGTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTS----ASFDARI---YDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNE 917
P +W DC G++QSPIN+ ++ S S LQ + + ++ I N W+V C + T+ Y L+Q H HSPSE+ IGG AE+H VH EG ELLV+GV+FDV YG N W+ +T +D S ++ + +++P + H+ GSLTTPPC+E VTWI+M++
Sbjct: 95 PENWDSVNDDCAGTSQSPINVVQASPS---SDLSGLQLTKAKSSCNAVYLIDNYHTWKVDMTSCDDAYYATWKGTDYYLIQFHFHSPSENTIGGGYFDAEMHLVHASAEG---ELLVIGVMFDVVDYGGNHFFSQFWN--NTWSDDPDWYRVVSLESNLDPYTEILPATPSYYHWNGSLTTPPCSEGVTWILMSQ 281
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: UPI001F21F73F (carbonic anhydrase family protein n=2 Tax=Acaryochloris TaxID=155977 RepID=UPI001F21F73F) HSP 1 Score: 114 bits (286), Expect = 1.780e-26 Identity = 77/227 (33.92%), Postives = 112/227 (49.34%), Query Frame = 3 Query: 288 TPGTGDAEWTYRRAATDGGKPYGPSDWFQ---GYPDCG-GSAQSPINLAASTHSVVDSTQFNLQFFPHTCAASELFFIANERVWEVVFEGCSEQASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDVLDTGADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFR 956
TP W+Y A+ P W + Y C G AQSPINL + ++S L H+ E + N R V +E + +LT N + Y LVQ H H+PSEH I A E+H VH + A+EL VVGV+ + N L +WD + + + + D + L+P ++ F HY GSLTTPPC+ESV W ++ +P S+ Q++ F+
Sbjct: 21 TPAIATPIWSYEGASD-------PGHWSELQSDYSLCSTGQAQSPINLRSQD---LNSDHETLNVDYHSSPLDE---VNNGRTVTVNYEAGN---TLTLNSQTYELVQFHFHAPSEHLIDNKTSAMEMHLVH--KNAANELAVVGVM--IKPGAANPLLDEIWDNMPGVEEENAPNLDIDVRSLLPRDRSFYHYQGSLTTPPCSESVNWAILQQPIQASRQQINTFK 227
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Match: A0A836C9F5_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F5_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.870e-26 Identity = 74/241 (30.71%), Postives = 121/241 (50.21%), Query Frame = 3 Query: 309 EWTYRRAATDGGK--PYGPSDWFQG--YPDCGGSAQSPINLAASTHSVVDSTQ-------FNLQFFPHTCAASELFFIANERVWEVVFEGCSE------QASLTFNDEAYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKEGTADELLVVGVLFDVSKYGTNVELQPLWDVLDT------GADSTSASFDARIYDLIPPNKVFSHYMGSLTTPPCTESVTWIVMNEPTVISKMQLDEFRVS 962
+WTY G P+DW + Y C G QSPI++ ST + + + F+ Q +C S+L + + E+ +E C + Q S +Y L Q+H+H+ SEH++ G AAE+H VH+ E + ++LV+ VL DV++ E+ W +++ G + + + Y L+P +K + Y GSLT PPCTE+VT++++ E T ++ QL FR S
Sbjct: 83 DWTYNPVCYGDGSYTVLAPADWHKNEDYAACAGPRQSPIDIVTSTLNDLGCSSDNEYLPAFSWQLQSGSCPFSQLV-PSTKHALELSYEECDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGQFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESAIDMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQS 322 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10138.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10138.229.1 >prot_P-canaliculata_contig10138.229.1 ID=prot_P-canaliculata_contig10138.229.1|Name=mRNA_P-canaliculata_contig10138.229.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=274bp MSRFVLLGFFLLAYNFVVHVSALLPLFGDDESDTTNTTTGTTPGTGDAEWback to top mRNA from alignment at P-canaliculata_contig10138:3752..8029- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10138.229.1 ID=mRNA_P-canaliculata_contig10138.229.1|Name=mRNA_P-canaliculata_contig10138.229.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4278bp|location=Sequence derived from alignment at P-canaliculata_contig10138:3752..8029- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10138:3752..8029- >mRNA_P-canaliculata_contig10138.229.1 ID=mRNA_P-canaliculata_contig10138.229.1|Name=mRNA_P-canaliculata_contig10138.229.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at P-canaliculata_contig10138:3752..8029- (Pelvetia canaliculata dioecious)back to top |