mRNA_P-canaliculata_contig101159.204.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: UPI00167C3CC2 (peptidoglycan-associated lipoprotein Pal n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167C3CC2) HSP 1 Score: 230 bits (587), Expect = 3.370e-74 Identity = 123/186 (66.13%), Postives = 138/186 (74.19%), Query Frame = 1 Query: 4 LMAGAALLILSACATQPDPVAE-LPPPXXXXXXXXXXXXXXXXXXXXXXXXXQVVQPGSGFIPPIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRL 558 L+A AALL+LSACAT+PDPV E + P V P P PGS+EDFA+Q+GGEPRVFFGY+Q+DLSPEA DVLRRQANWL+IY DATAVIEG+ADERGTREYNLALGARRA+SV+ FLVSQGVSPNRL+TISYGKERPID R GWARNRNGFT+LRL Sbjct: 5 LIASAALLVLSACATKPDPVEEVIERPAEVETPGPVFEPAPEVLPPVIDQPTTVEAPQVNL--PTPGSIEDFAYQAGGEPRVFFGYDQFDLSPEARDVLRRQANWLSIYTDATAVIEGHADERGTREYNLALGARRADSVKSFLVSQGVSPNRLKTISYGKERPIDARSTESGWARNRNGFTSLRL 188
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: UPI0004091623 (peptidoglycan-associated lipoprotein Pal n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0004091623) HSP 1 Score: 192 bits (487), Expect = 5.350e-59 Identity = 105/190 (55.26%), Postives = 123/190 (64.74%), Query Frame = 1 Query: 19 ALLILSACATQPD-------PVAELPPPXXXXXXXXXXXXXXXXXXXXXXXXXQVVQPGSGFIP--PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLG 561 A+L LSACAT+P PV E PP V G F P P+PGS+ DFA+Q GGEPR++FGY++YDL+ EA + LRRQA WL Y A+IEGNADERGTREYNLALGARRA++V+ FLVSQGVSP+RL T+SYGKERPIDG N GWARNRNG TN+ G Sbjct: 11 AVLALSACATKPKIEPVQERPVVEAPPQIFEDTKPTPAPVVQLPP----------VDQGPVFDPNAPVPGSIADFAYQVGGEPRIYFGYDRYDLTNEAREALRRQAQWLQAYGQVNAIIEGNADERGTREYNLALGARRADTVKAFLVSQGVSPSRLTTVSYGKERPIDGASNEAGWARNRNGHTNITTG 190
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A420WL91_9PROT (Peptidoglycan-associated protein n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WL91_9PROT) HSP 1 Score: 191 bits (485), Expect = 9.180e-59 Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1 Query: 190 PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570 P+PGS+EDFA+QSGGEPRV+FGY+Q+ LS EA + L QANWL Y +A A+IEG+ADERGTREYNLALGARRAE+V+ FLV QGV+ RL T+SYGKERPIDGR N GWARNRNGFTN+ +GG S Sbjct: 62 PVPGSVEDFAYQSGGEPRVYFGYDQFTLSQEARNSLLAQANWLMTYTNANAIIEGHADERGTREYNLALGARRAEAVKAFLVGQGVASGRLTTVSYGKERPIDGRSNEAGWARNRNGFTNITVGGIS 188
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A8J3CKN8_9PROT (Peptidoglycan-associated lipoprotein n=2 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CKN8_9PROT) HSP 1 Score: 184 bits (468), Expect = 1.070e-56 Identity = 86/127 (67.72%), Postives = 104/127 (81.89%), Query Frame = 1 Query: 190 PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570 P PGSLEDFA+ +GG+ R++F Y+Q+ LS +A LR+QA WLN Y TAV+EG+ADERGTR+YN+ALGARRA SV+ FLVSQGV P+RL T+SYGKERPIDGR N +GWARNRNG+TNLR G S Sbjct: 25 PFPGSLEDFAYSTGGDARIYFSYDQFTLSADARQTLRQQAEWLNRYNSYTAVVEGHADERGTRQYNIALGARRANSVKAFLVSQGVEPSRLTTVSYGKERPIDGRSNEEGWARNRNGYTNLRPVGQS 151
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A848V2D8_9PROT (Peptidoglycan-associated protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V2D8_9PROT) HSP 1 Score: 176 bits (447), Expect = 5.470e-53 Identity = 87/124 (70.16%), Postives = 99/124 (79.84%), Query Frame = 1 Query: 190 PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLG 561 P+PGSL+DF F SGG+ RVFF +++DLS A + L+RQA WL YQ TAVIEGNADERGTREYNLAL ARRAESV+ FLVS GVSP+RL T+SYGKERPID R N +GWARNRN TNL G Sbjct: 63 PLPGSLDDFHFVSGGQGRVFFALDKHDLSSGARESLKRQAQWLQTYQGVTAVIEGNADERGTREYNLALAARRAESVKSFLVSLGVSPSRLTTVSYGKERPIDPRSNEEGWARNRNAHTNLMSG 186
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A2G2IZC2_9PROT (Peptidoglycan-associated protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2IZC2_9PROT) HSP 1 Score: 170 bits (431), Expect = 1.320e-50 Identity = 80/127 (62.99%), Postives = 101/127 (79.53%), Query Frame = 1 Query: 190 PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570 P+PG+++DF + S GE R++F YNQYDL P A DVLRRQA WLN+Y A ++ GNADERGTREYNLALGARRA++V+ FLVSQGV+P R+ T+SYGKERPIDG N WA NRN +++ +GG+S Sbjct: 61 PLPGTVDDFKYTS-GEDRIYFAYNQYDLVPVARDVLRRQAQWLNMYPSAILIVGGNADERGTREYNLALGARRADAVKAFLVSQGVAPGRITTVSYGKERPIDGGSNEAAWALNRNAHSSVLIGGNS 186
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A2G2N0S8_9PROT (Peptidoglycan-associated protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2N0S8_9PROT) HSP 1 Score: 165 bits (417), Expect = 1.850e-48 Identity = 89/190 (46.84%), Postives = 113/190 (59.47%), Query Frame = 1 Query: 1 YLMAGAALLILSACATQPDPVAELPPPXXXXXXXXXXXXXXXXXXXXXXXXXQVVQPGSGFIPPIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570 +L+ +L LSAC + PDP V+ PG P PG+ E F + S G+ RV+F YN+YDL+P A +VLR QANWL Y A V+ GNADERGTREYNLALGARRA++V+ F VSQG+ P R+ T+SYGKERPIDGR N + WA NRN + + +GG+S Sbjct: 5 FLLMSVVVLTLSACVSTPDPAPVKQQVQTQAPIFEPEPEAPEAPEIIEVPVEAVIPPG-----PQPGTSEHFKYTS-GDDRVYFDYNKYDLTPRAREVLRSQANWLERYDGAIIVVGGNADERGTREYNLALGARRADAVKAFFVSQGIEPGRITTVSYGKERPIDGRSNEEAWAINRNAHSAVLVGGTS 188
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A7C5R0E1_9PROT (Peptidoglycan-associated protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5R0E1_9PROT) HSP 1 Score: 163 bits (412), Expect = 1.060e-47 Identity = 90/183 (49.18%), Postives = 113/183 (61.75%), Query Frame = 1 Query: 22 LLILSACATQPDPVAELPPPXXXXXXXXXXXXXXXXXXXXXXXXXQVVQPGSGFIPPIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570 +L L ACAT+P PV + P V G P PG++ DF + S G+ RV+FG+++YDL+P+A + LRRQA WLN Y A VI GNADERGTREYNLALGARRAES + FLVS+GV+P R+ T+SYGKERPID N WARNRN + + +GG+S Sbjct: 12 MLALGACATKPKPVEVVEQPAQTQPAPEVFQPAPVEPVEQVPNAPINVYNG-----PTPGTVADFKY-SAGDDRVYFGFDRYDLTPQARETLRRQAEWLNRYPTAIVVIGGNADERGTREYNLALGARRAESTKAFLVSKGVNPGRITTVSYGKERPIDPGSNEAAWARNRNAHSAVMVGGNS 188
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: A0A520XF70_9ACTN (Peptidoglycan-associated protein n=2 Tax=Bacteria TaxID=2 RepID=A0A520XF70_9ACTN) HSP 1 Score: 161 bits (408), Expect = 4.520e-47 Identity = 94/199 (47.24%), Postives = 123/199 (61.81%), Query Frame = 1 Query: 1 YLMAGAALLILSACATQPD--------PVA-ELPPPXXXXXXXXXXXXXXXXXXXXXXXXXQVVQPGSGFIPPIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570 Y++ G+ L LSACA+ P+ PV ELPPP VVQ + P PG+ E F + S G+ RV+FGY++YDLS +A DVLR+Q+ WLN Y A V+ GN DERGTREYNLALGARRA++V+ FLVSQGV+P+R+ T+SYGKERPI G N WA NRN +++ +GG++ Sbjct: 5 YILLGSIALTLSACASTPEVEEVVETEPVQQELPPPVVEPAPEPVVQAPP------------VVQ--EVYTGPPPGTAEHFKYVS-GDDRVYFGYDRYDLSSQARDVLRKQSEWLNQYGQAIVVVGGNCDERGTREYNLALGARRADAVKAFLVSQGVNPSRITTVSYGKERPIAGESNEAAWALNRNAHSSVMVGGNT 188
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Match: UPI00036EAF9E (OmpA family protein n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00036EAF9E) HSP 1 Score: 159 bits (401), Expect = 5.330e-46 Identity = 78/127 (61.42%), Postives = 97/127 (76.38%), Query Frame = 1 Query: 190 PIPGSLEDFAFQSGGEPRVFFGYNQYDLSPEALDVLRRQANWLNIYQDATAVIEGNADERGTREYNLALGARRAESVQDFLVSQGVSPNRLRTISYGKERPIDGRPNADGWARNRNGFTNLRLGGSS 570 PIPGS++DF ++G RVFFGY+Q LSP+A+ VLR QA+WL Y A +I G+ADERGTREYNLALGARRAE+V+ FLV Q ++PNR+ T+SYGKERPIDGR + WA NRNG T + G +S Sbjct: 67 PIPGSIQDFVERAGD--RVFFGYDQDTLSPQAMQVLRAQASWLQNYPGAVIIIGGHADERGTREYNLALGARRAEAVKSFLVGQSIAPNRMSTVSYGKERPIDGRSTEEAWALNRNGHTAIVSGTNS 191 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101159.204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101159.204.1 >prot_P-canaliculata_contig101159.204.1 ID=prot_P-canaliculata_contig101159.204.1|Name=mRNA_P-canaliculata_contig101159.204.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=189bp MAGAALLILSACATQPDPVAELPPPAPVTQAPPPQVFQPAPPPAVVQQAPback to top mRNA from alignment at P-canaliculata_contig101159:420..992+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101159.204.1 ID=mRNA_P-canaliculata_contig101159.204.1|Name=mRNA_P-canaliculata_contig101159.204.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at P-canaliculata_contig101159:420..992+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101159:420..992+ >mRNA_P-canaliculata_contig101159.204.1 ID=mRNA_P-canaliculata_contig101159.204.1|Name=mRNA_P-canaliculata_contig101159.204.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at P-canaliculata_contig101159:420..992+ (Pelvetia canaliculata dioecious)back to top |