mRNA_P-canaliculata_contig101018.189.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig101018.189.1 vs. uniprot
Match: A0A2D5ATM3_9BACT (Cytochrome c domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5ATM3_9BACT) HSP 1 Score: 165 bits (417), Expect = 7.310e-42 Identity = 125/341 (36.66%), Postives = 165/341 (48.39%), Query Frame = 1 Query: 1 PNKVWPTVTDPVAISFYGGHIYVLGQGTHALAKQDAADGRIVQVFAPGATNYLKGAFSEPADLVIDSSSGQAFVSCMGSDSVFQIDLSGSMTEVRRWRTGLGAFPGEHITHGGADEYSLGVKRPRFL-------SLHGGNLYVAPFLSGNNTL-TFMEGDSPSGSGHKGTDIINGHASQDSFGGALAITGLRNDGMPDADLICIDLDQPASTQISTVIRRAGSMLTAHGFHPTSDEVWMLGMYSKNLDEN--TEPDFKGDFARNTLVVRPLA----SGAPPVTIDPSSGTIDLDQ-----PG--YSESKSLPLPYALEFGGPNGLTAIASSTLSRISLRDS 960 P + W TV++PV+I+ Y + V+GQG HALA+ D DG I+ + A SEPAD+V+D+ + +A+VSCMG D V QIDLS M + W G L +KRPRFL S +YVAP +SGNNT+ F G P DI++G T L G+PD DL I Q+ VIR AGS+L HG +P + + WM+G+ NL+ +EP +G FA N L + A G+PP D IDLD PG Y +S+ PYAL F G AIA+ST + L DS Sbjct: 101 PTQRWRTVSNPVSIAAYAEDLLVVGQGNHALARHDLPDGEIIDLLALP---------SEPADIVVDTDNDEAWVSCMGDDCVVQIDLSSPMRIKKIWSWDEG----------------LELKRPRFLFFDPQTPSPDDNLVYVAPMVSGNNTIFKFNTGPGP--------DIVDG-------------TSLPAGGLPDEDLFRIST---GPDQVEPVIRAAGSLLFGHGKNPVTGDYWMVGLDHLNLEPGMLSEPTVRGKFAMNQLAITSAALFSAGGSPPPEPD---SMIDLDDYDVAAPGAQYQSDRSVSFPYALAFEPGTGRAAIAASTSPLVVLTDS 389
BLAST of mRNA_P-canaliculata_contig101018.189.1 vs. uniprot
Match: A0A7C5J2T7_9DELT (Cytochrome c domain-containing protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5J2T7_9DELT) HSP 1 Score: 128 bits (321), Expect = 3.790e-29 Identity = 102/322 (31.68%), Postives = 156/322 (48.45%), Query Frame = 1 Query: 13 WPTVTDPVAISFYGGHIYVLGQGTHALAKQDAADGRIVQVFAPGATNYLKGAFSEPADLVIDSSSGQAFVSCMGSDSVFQIDLSGSMTEVRRWRTGLGAFPGEHITHGGADEYSLGVKRPRFLSLHG-----GNLYVAPFLSGNNTLTFMEGDSPSGSGHKGTDIINGHASQDSFGGALAITGLRNDGMPDADLICIDLDQPASTQISTVIRRAGSMLTAHGFHPTSDEVWMLGMYSKNLDENTEPDFKGDFARNTLVVRPLASGAPPVTIDPSSGTIDLDQP----GYSESKSLPLPYALEFGGPNGLTAIASSTLSRISL 951 WPT+ +PVAI+ + + V+G + +LA+ D GRI + A A EPAD+V+D+ +A+V+C G D V +IDL+ + TE R Y++ +RPRFL L +YVAPFLSGNNT T +P + +++ L G+ +PD DL ID QPA + ++ V+ AG+++ HG +P + + W++ S N +++E +G FA+ L + ++SG+ PV + IDLD P P+AL F G AIASST I+L Sbjct: 91 WPTLHNPVAITEWRDSLLVVGGSSWSLAEHDRTTGRITRQVALAA---------EPADIVVDAIRDEAYVACQGDDVVVRIDLT-TFTENAR--------------------YAIPAERPRFLFLDELAVPTPLVYVAPFLSGNNT-TLARSPAP----EPRSTVLD-----------LKAPGIGWTSLPDEDLFVIDPTQPAGSAVTPVLHEAGTLIAEHGRNPATSDYWVISTESLNAAQHSEDKHRGRFAKAQLTIG-ISSGSRPVP----ATVIDLDVPIGXXXXXXXXXXSFPFALAFHS-TGYAAIASSTGDLITL 360
BLAST of mRNA_P-canaliculata_contig101018.189.1 vs. uniprot
Match: A0A2D5AW94_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AW94_9BACT) HSP 1 Score: 116 bits (290), Expect = 4.520e-25 Identity = 100/334 (29.94%), Postives = 150/334 (44.91%), Query Frame = 1 Query: 1 PNKVWPTVTDPVAISFYGGHIYVLGQGTHALAKQDAADGRIVQVFAPGATNYLKGAFSEPADLVIDSSSGQAFVSCMGSDSVFQIDLSGSMTEVRRWRTGLGAFPGEHITHGGADEYSLGVKRPRFLSLHGGNLYVAPFLSGNNTLTFMEGDSPSGSGHKGTDIINGHASQDSFGGALAITGLRNDGMPDADLICIDLDQPASTQISTVIRRAGSMLTAHGFHPTSDEVWML--GMYSKNLDENTEPDFKGDFARNTLVV-RPLASGAPPVTIDPSSGTIDLDQPG-------YSESKSLPLPYALEFGGPN-----GLTAIASSTLSRISLRD 957 P WPT+ +PV++ +G + VLG TH+LA D G ++ + L SEP DL++D ++G A++S + V +DL+ + V R + PGE D + + ++R L VAP LSGNNT G G + A+ G + ++G N G+PD DL+ + L AS + R AG+++ H +P ++E W L +++ + E + +G FA N L + P A G P D IDLD YS S+ PYAL F P G IASST ++L D Sbjct: 89 PEASWPTLNNPVSMDVWGDRVVVLGGATHSLAIHDRFTGEVL------GHHELP---SEPGDLIMDETTGIAYISSQAENLVIALDLNNTNNIVELERHEI---PGEQPRFMYLDTHPISLERV---------LVVAPMLSGNNTAPLP--------GAIGVEFTREQAT----GEIVNVSGFANGGLPDEDLLVLPLVGGASPPVLPSGREAGTLMLEHARNPLTNEYWALTVDLHNDLPGQRGEDELRGIFASNNLAIFAPSALGVPR---DLPDRIIDLDDNDPSTAGAQYSSETSVSFPYALAFVPPTNDALAGWAGIASSTGDLVALLD 386
BLAST of mRNA_P-canaliculata_contig101018.189.1 vs. uniprot
Match: A0A521KRH2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KRH2_9BACT) HSP 1 Score: 74.7 bits (182), Expect = 3.910e-11 Identity = 92/342 (26.90%), Postives = 149/342 (43.57%), Query Frame = 1 Query: 28 DPVAISFYGG--------HIYVLGQGTHALAKQDAADGRIVQVF------APGATNYLK-GAFSEPADLVIDSS--SGQ---AFVSCMGSDSVFQIDL-SGSMTEVRRWRTGLGAFPGEHITHGGADEYSLGVKRPRFLSLHGGNL------YVAPFLSGNNTLTFMEGDSPSGSGHKGTDIINGHASQDSFGGALAITGLRNDG--MPDADLICIDLDQPASTQ--ISTVIRRAGSMLTAHGFHPTS-----DEVWMLGMYSKNLDENT--EPDFKGDFARN--TLVVRPLASGAPPVTIDPSSGTIDLDQPGYSESK--------SLPLPYALEFGGPNG 909 DPV+++++ G + V+ Q + A+A+ DA G + V P A ++ G+ +EPAD+++D + SG+ AFVSC+G +SV QIDL +G + V R LG + +K P FLS L VAP SGN++ ++ G + G +++T L G +PDADL I A+ + V R G++L AHG +P E+W L ++N EP G F+ N T + PLA+ + + ++ +I LD P + + ++ PY++ F G Sbjct: 90 DPVSVAYWDGATSAPEDDEVLVVCQASWAIARVDATSGEMKSVIQLRESDGPIAGRPVRMGSMAEPADILVDDAPPSGENDRAFVSCIGGNSVLQIDLVTGQVVRVFREDRALGL------------DTEFQIKSPLFLSFEPAALGEARRVLVAPLQSGNSS-AWLGGTT----------------------GGVSVTDLVAAGSPLPDADLFRITPVSAATPNGLVEVVARATGTLLFAHGVNPLPTTAGHQELWQLNSDAQNKTTGLQGEPAIAGKFSFNRITRLRLPLAANGAGIP-NANATSISLDPPAMTGASGGSITTQTTVGQPYSIAFNSSYG 395 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101018.189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101018.189.1 >prot_P-canaliculata_contig101018.189.1 ID=prot_P-canaliculata_contig101018.189.1|Name=mRNA_P-canaliculata_contig101018.189.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=320bp PNKVWPTVTDPVAISFYGGHIYVLGQGTHALAKQDAADGRIVQVFAPGATback to top mRNA from alignment at P-canaliculata_contig101018:3..962- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101018.189.1 ID=mRNA_P-canaliculata_contig101018.189.1|Name=mRNA_P-canaliculata_contig101018.189.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=960bp|location=Sequence derived from alignment at P-canaliculata_contig101018:3..962- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101018:3..962- >mRNA_P-canaliculata_contig101018.189.1 ID=mRNA_P-canaliculata_contig101018.189.1|Name=mRNA_P-canaliculata_contig101018.189.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at P-canaliculata_contig101018:3..962- (Pelvetia canaliculata dioecious)back to top |