mRNA_P-canaliculata_contig10097.182.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: D7FZL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL4_ECTSI) HSP 1 Score: 381 bits (978), Expect = 3.350e-121 Identity = 203/319 (63.64%), Postives = 243/319 (76.18%), Query Frame = 1 Query: 37 EELEIASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAA-KKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGT----------EGKSG---------------EVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA--KPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH 909 EE + ++GRRR++I ++V++AVRRG+IPKE YA+LL+SP+MS+LC N+GWRARLLGD+ FMTKLAIEM+TGT +Q +AEYQKRGK+F +EL+FV ADTLTCLFANFAA+WLSCPTVAV A KK AK+GG LQ +LA+CPSNAFQKVV EGGVSK+FS+ +RGAAL++PMPKLF +GFGATL GYGL+AGLET A R+ + K G KP VPVLGS LA+G FLAV TN+RYQ IAGAVEQR+FD M PGLS L ST VRSANLYVGSLTIVD LR+VG+QH Sbjct: 109 EEYDFVAKGRRRKRIFRKVERAVRRGKIPKECSSDYAKLLTSPLMSLLCKNSGWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKKFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVERGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDGLRYVGVQH 427
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A6H5LAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU0_9PHAE) HSP 1 Score: 360 bits (923), Expect = 7.780e-115 Identity = 194/295 (65.76%), Postives = 225/295 (76.27%), Query Frame = 1 Query: 109 RGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAA-KKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSR---------GEGT-EGKSG---------------EVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA--KPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH 909 RG+IPKE YA+LL+SP+MS+LC N+GWRARLLGD+ FMTKLAIEM+TGT +Q +AEYQKRGKRF +EL+FV ADTLTCLFANFAA+WLSCPTVAV A KK AK+GG LQ +LA+CPSNAFQKVV EGGVSK+FS+ +RGAAL++PMPKLF +GFGATL GYGL+AGLET A + G+G + K G KP VPVLGS LA+G FLAV TN+RYQ IAGAVEQR+FD M PGLS L ST VRSANLYVGSLTIVDWLR+VG+Q Sbjct: 9 RGQIPKECSSDYAKLLTSPLMSLLCKNSGWRARLLGDTTFMTKLAIEMVTGTGAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWTTAAAAAPPVVAGKGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 303
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A836CF64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF64_9STRA) HSP 1 Score: 195 bits (496), Expect = 1.120e-53 Identity = 113/228 (49.56%), Postives = 149/228 (65.35%), Query Frame = 1 Query: 271 QLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGG---ALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAM--AKPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH*RSEDSIVRL 939 Q++AEY+KR +F KE +FVLAD LT FANFAA+W SCPT+ + A A S G +L ++ SCPSNAFQ+VV + +SL QRGAALI PMP+LF +GFGA GYGL + + I+ A + T K+ E P+ SSLAIG FLAVS+N+RYQ+IAG +EQR D +KP +S S +R+ANLY+G+ IVDWLR VG+QH ++ V + Sbjct: 2 QVLAEYEKRRDKFFKEFDFVLADILTSCFANFAAVWASCPTMRPAIAGSADAASKGMFASLGRFMNSCPSNAFQRVVAP---ATHYSLAQRGAALIKPMPQLFVIGFGACAAGYGLTSLMSHIRLAL---DPTMVKNTED---APIFKSSLAIGAFLAVSSNLRYQIIAGGIEQRFLDVALASKPAVSNACSFVLRTANLYLGASMIVDWLRIVGVQHSAQDEEPVAV 220
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A6P5H2P0_ANACO (protein RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5H2P0_ANACO) HSP 1 Score: 181 bits (459), Expect = 7.400e-47 Identity = 113/295 (38.31%), Postives = 171/295 (57.97%), Query Frame = 1 Query: 43 LEIASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA---KPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH*RS 918 L +A GR E + Q + AV GRIP E + +A L SP++ L G++ RLL D F+TK+AIE G ++ AE+++R +F KEL+FV AD + + A+F +WL PTV++ K +A S G + + SCP NAFQ + S+S+ QR A++ KLF VG GA+L+G G+ L I+ A + +E + VPVL +S+A G ++AVS+N+RYQ++AG +EQRM + + K LS + VR+ N ++GSL VD+ R++G+Q R Sbjct: 88 LVLAEMGRGLESLPQDLAAAVEAGRIPGEIVRRFAELEKSPVLRWLLRFGGFKERLLADDLFLTKVAIECGVGIFTKTAAEWERRRDKFPKELDFVFADVVMAIIADFMLVWLPAPTVSL---KPPLALSAGPIAKFFYSCPDNAFQVALA----GTSYSVLQRVGAIVRNGSKLFVVGTGASLIGTGITNVLINIRKAFDKDFASEAED------VPVLSTSIAYGVYMAVSSNLRYQILAGIIEQRMLEPLLHNRKLALSAMCFA-VRTGNTFLGSLMWVDYARWIGIQKIRE 368
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A5J9U7T0_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9U7T0_9POAL) HSP 1 Score: 180 bits (456), Expect = 3.340e-46 Identity = 109/288 (37.85%), Postives = 171/288 (59.38%), Query Frame = 1 Query: 49 IASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMAKPGLSKLGSTF--VRSANLYVGSLTIVDWLRFVGLQ 906 +A GR+ E + + AV+ GR+P E + +A L +SP+ L G++ RLL D F+TK+A E G ++ AEY+KR +F KEL+FV+ D + + A+F +WL PTV++ K +A + GA+ + +CP NAFQ + S+S QR A++ KLFAVG A+LVG G+ L ++R TE +GEV+ +P++ +S+A G ++AVS+N+RYQ++AG +EQRM + + LG+ VR+ N ++GSL VD+ R+VG+Q Sbjct: 117 LAQLGRKLESLPADLAAAVQAGRVPGEIVRRFADLEASPVFRWLLQFGGFKERLLADDLFLTKVAFECGIGIFTKTAAEYEKRKDKFMKELDFVICDVVMAIIADFMLVWLPAPTVSL---KPSIAGNAGAIAKFFYNCPDNAFQVALA----GSSYSFLQRIGAIVRNGAKLFAVGTSASLVGTGVTNAL-----IKARKAVTEDSAGEVEN-IPIVETSVAYGVYMAVSSNLRYQILAGVIEQRMLEPLLHRHKVALGALCFAVRTGNTFLGSLLWVDYARWVGVQ 391
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A833R1V6_9POAL (Protein RETICULATA-RELATED 4 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R1V6_9POAL) HSP 1 Score: 179 bits (453), Expect = 7.270e-46 Identity = 114/294 (38.78%), Postives = 167/294 (56.80%), Query Frame = 1 Query: 43 LEIASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMAKPGLSKLGSTF--VRSANLYVGSLTIVDWLRFVGLQH*RS 918 L + + GR E + + A++ GRIP + + L SP+M L G++ RLL D F+TK+ IE G ++ AEY+KR + F KEL+FVLAD + L A+F +WL PTV++ K +A S G + + SCP NAFQ V G S+S QR A++ KLF VG GA+L+G GL L I + ++ + G V VP+L +S A G ++AVS+N+RYQ++AG +EQRM + + LG+ VR+ N ++GSL VD+ R+VG+Q R Sbjct: 103 LVLGAAGRGLETLPSDLAAAIKAGRIPGDIVTRFLELEKSPLMRWLLQFGGFKERLLADDLFLTKVGIECGVGIFTKTAAEYEKRKENFLKELDFVLADVIMALVADFMLVWLPAPTVSL---KPPLAVSAGPIAKFFYSCPDNAFQVVALSG---TSYSFLQRVGAILRNGSKLFGVGTGASLIGTGLTNAL--IYSRKAFDKDFAG----VAEDVPILSTSAAYGVYMAVSSNLRYQILAGIIEQRMLEPLLHNQKLALGALCFAVRTGNTFLGSLMWVDYARWVGVQKVRE 384
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: A0A7S3XYV0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYV0_HETAK) HSP 1 Score: 174 bits (441), Expect = 3.820e-45 Identity = 104/270 (38.52%), Postives = 157/270 (58.15%), Query Frame = 1 Query: 100 AVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA--KPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGL 903 AV G++P + + + + S +M G+R RL+ D +F+TK A+E+ G V QL AE ++RG + ++L+FV+AD LTC+ ANF A+WL+ PT+A A A G A++ + SCP NAFQKV T G F++ QR L+ P+LF VGF A++ G+G GL ++ + E G V VL +L IG +L VSTN+RYQ++AG +E+R+ A+ + L+ GS R+ N +VGS +V L++ GL Sbjct: 31 AVVAGKLPVDALERFLKFEKSAVMGGFMKTAGFRNRLMNDPSFLTKCAMEIGIGGVCQLAAEVKERGDKLLQQLDFVVADVLTCVIANFMAVWLAAPTLAALAPPPAAA--GNAVKRFFDSCPGNAFQKV-TPGRAP--FTVAQRCGTLVGAFPQLFLVGFAASVAGFGFTLGLSKLREKLNPASAEEEPLGGPAKEVQVLKPALVIGAYLGVSTNVRYQLVAGLLEERLLGALFANQQFLNTAGSFIFRTGNTFVGSSQMVMTLKWTGL 295
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: UPI001CFB8E93 (protein RETICULATA-RELATED 4, chloroplastic-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFB8E93) HSP 1 Score: 176 bits (445), Expect = 1.060e-44 Identity = 109/294 (37.07%), Postives = 166/294 (56.46%), Query Frame = 1 Query: 43 LEIASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMAKPGLSKLGST--FVRSANLYVGSLTIVDWLRFVGLQH*RS 918 L +A GR E + + + AV GR+P + Y L +P+ L G++ RLL D F+TK+AIE G ++ AE ++R + F+KEL+FV AD + + A+F +WL PTVA+ A +A S G + +L +CP NAFQ + S+S QR A++ KLFAVG GA+L+G G+ L ++ A + E + VPVL +S+A G ++AVS+N+RYQV+AG +EQR+ + + L + VR+ N ++GSL VD+ R+VG+Q R Sbjct: 111 LALAEAGRTLESLPKDLAAAVEAGRVPAAIVRRYFELEKAPVFRWLLQFGGFKERLLADDLFLTKVAIECGVGIFTKTAAELERRRENFTKELDFVFADVVMAIIADFMLVWLPAPTVALRAP---LAVSAGPIAKFLHNCPDNAFQVALA----GTSYSFLQRIGAIMRNGAKLFAVGTGASLIGTGITNALINVRKAFDKSFADEAED------VPVLSTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHQHKLILSAICFVVRTGNTFLGSLMWVDYARWVGIQKIRE 391
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: UPI001C4F2427 (protein RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001C4F2427) HSP 1 Score: 175 bits (444), Expect = 1.200e-44 Identity = 115/310 (37.10%), Postives = 172/310 (55.48%), Query Frame = 1 Query: 13 DKGEGAGDEE-----LEIASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA---KPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH*RS 918 D+GE AGD+ L +A GR + I + A+ GRIP Y L SP+ L G++ RLL D F+ K+ +E G ++ AE+++R + F KEL+FVLAD + A+F +WL PTV++ + G+A S G + + +CP NAFQ + S+SL QR A++ KLFAVG A+LVG G+ L + A ++ + E + VP+L +S+A G ++AVS+N+RYQ++AG +EQRM + + K LS L VR+ N ++GSL VD+ R VG+Q R Sbjct: 88 DEGEEAGDKNKGEAILALAEVGRSLDSIPSDLASAIENGRIPGSIVHRYFELEKSPLFRWLLQFGGFKERLLADDLFLAKVFMECGVGIFTKTAAEWERRRENFVKELDFVLADVFMAIIADFMLVWLPAPTVSL---RSGLAVSAGPIAKFFHNCPDNAFQIALA----GSSYSLLQRIGAIVRNGAKLFAVGTTASLVGTGVTNALIRARKAVAKDDADEAEE------VPLLATSVAYGVYMAVSSNLRYQILAGVIEQRMLEPLLHHHKVALSALCFA-VRTGNTFLGSLLWVDYARLVGIQKIRE 383
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Match: C5YXG7_SORBI (Uncharacterized protein n=9 Tax=Andropogoneae TaxID=147429 RepID=C5YXG7_SORBI) HSP 1 Score: 176 bits (446), Expect = 1.290e-44 Identity = 110/288 (38.19%), Postives = 170/288 (59.03%), Query Frame = 1 Query: 49 IASEGRRREKILQRVDKAVRRGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKELEFVLADTLTCLFANFAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLETIQAARSRGEGTEGKSGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMAKPGLSKLG--STFVRSANLYVGSLTIVDWLRFVGLQ 906 +A GR+ E + + AV GRIP E + + L +SP+ L G++ RLL D F+TK+AIE G ++ AEY+KR + F KEL+FV+AD + + A+F +WL PTV++ + +A + GA+ + +CP NAFQ ++ S+SL QR A++ KLFAVG A+LVG G+ L + A S+ GEV+ +P++ +S+A G ++AVS+N+RYQV+AG +EQRM + + L S VR+ N ++GSL +D+ R+VG+Q Sbjct: 139 LAQLGRKLESLPADLAAAVEGGRIPAEIVRRFVDLEASPVFRWLLQFGGFKERLLADDLFLTKVAIECGVGIFTKTAAEYEKRRENFVKELDFVIADVVMAIVADFMLVWLPAPTVSL---QPPLAVNSGAIAKFFYNCPDNAFQVALS----GTSYSLLQRAGAILRNGAKLFAVGTSASLVGTGVTNALIKARQAASKDF-----DGEVEN-LPIVSTSVAYGVYMAVSSNLRYQVLAGVIEQRMLEPLLHQHKLVLSAASFAVRTGNTFLGSLLWIDYARWVGVQ 413 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10097.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10097.182.1 >prot_P-canaliculata_contig10097.182.1 ID=prot_P-canaliculata_contig10097.182.1|Name=mRNA_P-canaliculata_contig10097.182.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=248bp MSVLCSNNGWRARLLGDSAFMTKLAIEMITGTVSQLVAEYQKRGKRFSKEback to top mRNA from alignment at P-canaliculata_contig10097:1928..6297+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10097.182.1 ID=mRNA_P-canaliculata_contig10097.182.1|Name=mRNA_P-canaliculata_contig10097.182.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4370bp|location=Sequence derived from alignment at P-canaliculata_contig10097:1928..6297+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10097:1928..6297+ >mRNA_P-canaliculata_contig10097.182.1 ID=mRNA_P-canaliculata_contig10097.182.1|Name=mRNA_P-canaliculata_contig10097.182.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at P-canaliculata_contig10097:1928..6297+ (Pelvetia canaliculata dioecious)back to top |