mRNA_P-canaliculata_contig10093.175.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10093.175.1 vs. uniprot
Match: D7FQ85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ85_ECTSI) HSP 1 Score: 132 bits (333), Expect = 6.950e-29 Identity = 79/174 (45.40%), Postives = 116/174 (66.67%), Query Frame = 3 Query: 798 EHSKRTEQAKRLALEVARLRSSLRGSNYDLAVERKARRRLENDHREKVLAWENEREAIVSARHDAERALRTAQEELKEMRKQDEARCAKAKSEAAIGEASHRKAASALNGVIEVQDRLVRALRTEVDLIKRAKVVAQGDAREAGERLGLFVQGFQMWRDRAMLLEARMAELDHP 1319
EH K +QAKRLALEVARLRSSLR + +L ER R RLE++ ++ WE ER +V+++ +AER RTA+E++ + +++ R + SE E KA A+NGV++VQDRL++ALRTE+++ RA+ AQ +A EA ++L L+V F +WR+RA LE + +L HP
Sbjct: 343 EHQKTRDQAKRLALEVARLRSSLRTTTSELNTERSTRVRLEDEWWRRMQEWEEERGRLVASKQEAERTARTAEEDVARLLVKEKDREGEVASERLARETRQEKADIAMNGVVKVQDRLIQALRTELEMTDRARQAAQDNALEAKDQLRLYVDDFLLWRNRAKHLEGLLIDLGHP 516
BLAST of mRNA_P-canaliculata_contig10093.175.1 vs. uniprot
Match: A0A6H5KFY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY5_9PHAE) HSP 1 Score: 126 bits (317), Expect = 7.260e-27 Identity = 78/181 (43.09%), Postives = 116/181 (64.09%), Query Frame = 3 Query: 774 EGVKNAIEEHSKRTEQAKRLALEVARLRSSLRGSNYDLAVERKARRRLENDHREKVLAWENEREAIVSARHDAERALRTAQEELKEMRKQDEARCAKAKSEAAIGEASHRKAASALNGVIEVQDRLVRALRTEVDLIKRAKVVAQGDAREAGERLGLFVQGFQMWRDRAMLLEARMAELDH 1316
+G + EH +QAKRLALEVARLRSSLR + +L ER R RLE++ ++ WE + +V+++ +AERA RTA+E++ + +++ R + SE E+ KA A+ GV+ VQDRL++ALRTE++L A+ AQ +A EA ++L L+V F +WR+RA LEA + EL H
Sbjct: 324 QGDETRASEHQNTRDQAKRLALEVARLRSSLRATTSELNTERSTRVRLEDEWWRRMQEWEEKHGCLVASKQEAERAARTAEEDMARLLVKEKNREEEVASERLAQESRQEKADIAMKGVVTVQDRLIQALRTELELTDSARRAAQDNALEAKDQLRLYVNDFLLWRNRAKHLEALLIELGH 504 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10093.175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10093.175.1 >prot_P-canaliculata_contig10093.175.1 ID=prot_P-canaliculata_contig10093.175.1|Name=mRNA_P-canaliculata_contig10093.175.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=551bp MTALALVPLCDHVPDWQPGKATRLERSSDDGELEGHIPYSSTGWVPDVQAback to top mRNA from alignment at P-canaliculata_contig10093:1154..4240+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10093.175.1 ID=mRNA_P-canaliculata_contig10093.175.1|Name=mRNA_P-canaliculata_contig10093.175.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3087bp|location=Sequence derived from alignment at P-canaliculata_contig10093:1154..4240+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10093:1154..4240+ >mRNA_P-canaliculata_contig10093.175.1 ID=mRNA_P-canaliculata_contig10093.175.1|Name=mRNA_P-canaliculata_contig10093.175.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3306bp|location=Sequence derived from alignment at P-canaliculata_contig10093:1154..4240+ (Pelvetia canaliculata dioecious)back to top |