mRNA_P-canaliculata_contig100908.172.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Match: A6ESQ8_9BACT (CHU large protein uncharacterized (Fragment) n=1 Tax=unidentified eubacterium SCB49 TaxID=50743 RepID=A6ESQ8_9BACT) HSP 1 Score: 210 bits (535), Expect = 6.680e-60 Identity = 121/250 (48.40%), Postives = 162/250 (64.80%), Query Frame = 1 Query: 1 NMMEGISYPIALEGNTGGNFTNSFVVFIDWNQNDILNDAGEVYQITETITNSNGVDGQQATGTIAVPSSVVSGVTRMRVKKVTSDINLLDPCV--GDGSGQAEDYRISVT-----GTPPSNDLCDNAITLDCGSSVTGSTENATTDTDVAGANCGTAITAPGVWYAFTDATGEPATITATLCNG-TDYDSKISVFEG-DCNALVCIDGNDDDCGEQSTISWISDGVTTYYVLVHGSGIATGNFTLDVSCE 723 N+ +G +Y I L GNTGGN+TNSFVV+ DWNQN+IL+DAGEV++ I NS G DG + TG+I VP+ V G TR+RVKK+ L DPC+ G G GQAEDY +S+ G P ND CD+AI LDCG + TGST +AT AG P VWY+++ A G TIT +LC+G TDYDS+I +++ D N + NDD CG QS +S+ +DG +TYY+L+ G A GN++L ++C+ Sbjct: 331 NLTQGETYDITLAGNTGGNWTNSFVVYADWNQNEILDDAGEVFEFASVIANSTGEDGIEYTGSILVPADAVLGDTRLRVKKIYGTDGLSDPCLAGGFGFGQAEDYTVSIAAAGGGGVP--NDTCDDAIALDCGDTATGSTVDATDTAGGAG---------PDVWYSYSGAEG---TITVSLCDGATDYDSRIRIYDACDGNEIAV---NDDFCGLQSEVSFEADGTSTYYILIGSFGTAAGNYSLVLTCD 563
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Match: A0A5J4FWR9_9FLAO (P/Homo B domain-containing protein n=2 Tax=Patiriisocius marinistellae TaxID=2494560 RepID=A0A5J4FWR9_9FLAO) HSP 1 Score: 203 bits (516), Expect = 2.590e-56 Identity = 98/139 (70.50%), Postives = 117/139 (84.17%), Query Frame = 1 Query: 307 YRISVT-GTPPSNDLCDNAITLDCGSSVTGSTENATTDTDVAGANCGTAITAPGVWYAFTDATGEPATITATLCNGTDYDSKISVFEGDCNALVCIDGNDDDCGEQSTISWISDGVTTYYVLVHGSGIATGNFTLDVSC 720 + ++VT +P NDLC+NAI +DCG+SVTG+T AT D DVAGANCGT ITAPGVWYAFTD++G P T ATLCNGTDYDSKISVF GDC+ALVCIDGNDDDCG QS++++ +DG +TYY+LVHG G TGNFTLDV+C Sbjct: 692 FSLAVTCASPVENDLCENAIEIDCGASVTGTTIAATIDNDVAGANCGTDITAPGVWYAFTDSSGLPGTALATLCNGTDYDSKISVFSGDCSALVCIDGNDDDCGLQSSVTFPTDGASTYYILVHGFGANTGNFTLDVTC 830
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Match: UPI000AB5CC15 (proprotein convertase P-domain-containing protein n=1 Tax=Aequorivita soesokkakensis TaxID=1385699 RepID=UPI000AB5CC15) HSP 1 Score: 166 bits (419), Expect = 3.220e-43 Identity = 86/144 (59.72%), Postives = 108/144 (75.00%), Query Frame = 1 Query: 298 AEDYRISVTGTPP-SNDLCDNAITLDCGSSVTGSTENATTDTDVAGANCGTAITAPGVWYAFTDATGEPATITATLCNGTDYDSKISVFEGDCNA--LVCIDGNDDDCGEQSTISWISDGVTTYYVLVHGSGIATGNFTLDVSC 720 A ++ + VT P +ND C AI + CG SV+G+T+ AT DT VA +CGTA+T+PGVWY+ D +G P TIT +LC+GTDYDSKISV+ GDCNA L C+DGNDD CG QS I++ SDG T+Y +LVHG G ATGNFTLDV+C Sbjct: 880 AGNFSLDVTCEDPLANDDCSGAIAVSCGDSVSGTTDGATIDTGVA-PDCGTAVTSPGVWYSLDDNSGLPGTITLSLCSGTDYDSKISVYTGDCNAPPLTCVDGNDDSCGLQSEITFASDGNTSYLILVHGFGGATGNFTLDVTC 1022
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Match: A0A2G2CIB0_9FLAO (P/Homo B domain-containing protein n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A2G2CIB0_9FLAO) HSP 1 Score: 164 bits (415), Expect = 1.150e-42 Identity = 86/144 (59.72%), Postives = 105/144 (72.92%), Query Frame = 1 Query: 298 AEDYRISVTGTPP-SNDLCDNAITLDCGSSVTGSTENATTDTDVAGANCGTAITAPGVWYAFTDATGEPATITATLCNGTDYDSKISVFEGDCNA--LVCIDGNDDDCGEQSTISWISDGVTTYYVLVHGSGIATGNFTLDVSC 720 A ++ + VT P ND C AI + CG SVTG+T+ AT D VA +CGTA+T+PGVWY+ D +G P TIT +LCNGTDYDSKISV+ GDC A L C+DGNDD CG QS I++ SDG T+Y +LVHG G ATGNFTLDV+C Sbjct: 898 AGNFSLDVTCAEPLPNDDCSGAIAVSCGDSVTGTTDGATVDNGVA-PDCGTAVTSPGVWYSLDDNSGLPGTITLSLCNGTDYDSKISVYTGDCGAPPLTCVDGNDDSCGLQSEITFNSDGNTSYLILVHGFGGATGNFTLDVTC 1040
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Match: UPI001927681B (choice-of-anchor J domain-containing protein n=1 Tax=Aequorivita TaxID=153265 RepID=UPI001927681B) HSP 1 Score: 163 bits (413), Expect = 2.100e-42 Identity = 90/161 (55.90%), Postives = 109/161 (67.70%), Query Frame = 1 Query: 247 TSDINLLDPCVGDGSGQAEDYRISVTGTPP-SNDLCDNAITLDCGSSVTGSTENATTDTDVAGANCGTAITAPGVWYAFTDATGEPATITATLCNGTDYDSKISVFEGDCNA--LVCIDGNDDDCGEQSTISWISDGVTTYYVLVHGSGIATGNFTLDVSC 720 TS ++ G SG + + VT P ND C AI L CG SV G+T+ AT D VA +CGTA+T+PGVWY+ D +G P TIT +LCNGTDYDSKISV+ GDC A L C+DGNDD CG QS I++ SDG T+Y +LVHG G ATGNFTLDV+C Sbjct: 759 TSTYYIMVEGFGSNSGN---FSLDVTCAEPLPNDDCSGAIALSCGDSVAGTTDGATVDNGVA-PDCGTAVTSPGVWYSLDDNSGLPGTITLSLCNGTDYDSKISVYTGDCGAPPLTCVDGNDDSCGLQSEITFNSDGNTSYLILVHGFGGATGNFTLDVTC 915
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Match: A0A3L9Z0J5_9FLAO (Putative secreted protein (Por secretion system target) n=1 Tax=Ulvibacter antarcticus TaxID=442714 RepID=A0A3L9Z0J5_9FLAO) HSP 1 Score: 162 bits (409), Expect = 7.570e-42 Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 1 Query: 4 MMEGISYPIALEGNTGGNFTNSFVVFIDWNQNDILNDAGEVYQITETITNSNGVDGQQATGTIAVPSSVVSGVTRMRVKKVTSDINLLDPCVGDGSGQAEDYRISVT 324 M EG+SYPIALEGNT GNFTN F VFIDWNQND+L+DAGEVY+IT+TI NSNG DGQQATG+I VP+ V +G TRMRVKK+ N LDPC+G G GQAEDY I+VT Sbjct: 380 MEEGMSYPIALEGNTDGNFTNRFAVFIDWNQNDVLDDAGEVYEITQTIINSNGTDGQQATGSIVVPAGVTAGDTRMRVKKIFGTTNYLDPCLGTGFGQAEDYTITVT 486
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Match: A0A1A9LB91_9FLAO (Uncharacterized protein (Fragment) n=3 Tax=Aequorivita soesokkakensis TaxID=1385699 RepID=A0A1A9LB91_9FLAO) HSP 1 Score: 160 bits (404), Expect = 3.050e-41 Identity = 83/142 (58.45%), Postives = 99/142 (69.72%), Query Frame = 1 Query: 298 AEDYRISVTGTPP-SNDLCDNAITLDCGSSVTGSTENATTDTDVAGANCGTAITAPGVWYAFTDATGEPATITATLCNGTDYDSKISVFEGDCNALVCIDGNDDDCGEQSTISWISDGVTTYYVLVHGSGIATGNFTLDVSC 720 A ++ + VT P ND C+ AI + CG SV+GST AT DT CGT IT+PGVWY D +G P IT +LCNGTD+DSKISV+ G C ALVC+DGNDD CG QS IS+ SDG T YY+L+H G ATGNFTLDV+C Sbjct: 761 AGNFSLDVTCMDPLPNDGCEGAIAVSCGDSVSGSTVGATIDT---APTCGTPITSPGVWYTLDDNSGLPGDITLSLCNGTDFDSKISVYSGSCAALVCVDGNDDSCGLQSEISFASDGNTKYYILIHSFGGATGNFTLDVTC 899
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Match: A0A330MNK3_9FLAO (Por_Secre_tail domain-containing protein n=2 Tax=Aequorivita sp. CIP111184 TaxID=2211356 RepID=A0A330MNK3_9FLAO) HSP 1 Score: 160 bits (404), Expect = 3.330e-41 Identity = 84/148 (56.76%), Postives = 102/148 (68.92%), Query Frame = 1 Query: 280 GDGSGQAEDYRISVTGTPP-SNDLCDNAITLDCGSSVTGSTENATTDTDVAGANCGTAITAPGVWYAFTDATGEPATITATLCNGTDYDSKISVFEGDCNALVCIDGNDDDCGEQSTISWISDGVTTYYVLVHGSGIATGNFTLDVSC 720 G SG + + VT T P ND C+ AI ++CG SVTG+T +T DT CGT IT+PGVWY D +G P IT +LCNGTD+DSKISV+ G C ALVC+DGNDD CG QS IS+ SDG T +Y+L+H G ATGNFTLDV+C Sbjct: 723 GSNSGN---FSLDVTCTEPLPNDGCEGAIAVNCGDSVTGTTVGSTIDT---APTCGTPITSPGVWYTLDDNSGLPGDITLSLCNGTDFDSKISVYSGSCTALVCVDGNDDACGLQSEISFASDGNTKFYILIHSFGGATGNFTLDVTC 864
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Match: UPI0005D36275 (GEVED domain-containing protein n=1 Tax=Aequorivita vladivostokensis TaxID=171194 RepID=UPI0005D36275) HSP 1 Score: 159 bits (401), Expect = 8.280e-41 Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 1 Query: 298 AEDYRISVTGTPP-SNDLCDNAITLDCGSSVTGSTENATTDTDVAGANCGTAITAPGVWYAFTDATGEPATITATLCNGTDYDSKISVFEGDCNALVCIDGNDDDCGEQSTISWISDGVTTYYVLVHGSGIATGNFTLDVSC 720 A ++ + V+ T P ND C AI + CG SVTG+T AT D+ CG AIT+PGVWY+ D +G P IT +LCNGTD+DSKIS++ G C ALVC+DGNDD CG QS +++ SDG T YY+L+H G ATGNFTLDVSC Sbjct: 673 AGNFTLDVSCTQPLPNDDCSGAIAVSCGDSVTGTTVGATVDSTAP--VCGPAITSPGVWYSLNDDSGLPGDITVSLCNGTDFDSKISIYSGTCGALVCVDGNDDSCGLQSEVTFASDGNTQYYILIHSFGGATGNFTLDVSC 812
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Match: A0A5C6YLD4_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Aequorivita lipolytica TaxID=153267 RepID=A0A5C6YLD4_9FLAO) HSP 1 Score: 158 bits (400), Expect = 1.180e-40 Identity = 84/159 (52.83%), Postives = 106/159 (66.67%), Query Frame = 1 Query: 247 TSDINLLDPCVGDGSGQAEDYRISVTGTPP-SNDLCDNAITLDCGSSVTGSTENATTDTDVAGANCGTAITAPGVWYAFTDATGEPATITATLCNGTDYDSKISVFEGDCNALVCIDGNDDDCGEQSTISWISDGVTTYYVLVHGSGIATGNFTLDVSC 720 TS ++ G SG + + VT T P ND C AI + CG SVTG+T AT DT CGT IT+PGVWY+ D +G P IT +LCNGT++DSKISV+ G C+ALVC+DGNDD CG QS +++ S+G T YY+L+H G ATGNFTLDV+C Sbjct: 943 TSTYYIMVEGFGSSSGN---FSLDVTCTDPLPNDECSGAIAVSCGDSVTGTTVGATVDT---APTCGTPITSPGVWYSLNDDSGLPGDITVSLCNGTNFDSKISVYSGTCSALVCVDGNDDACGLQSEVTFASNGNTQYYILIHSFGGATGNFTLDVTC 1095 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100908.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100908.172.1 >prot_P-canaliculata_contig100908.172.1 ID=prot_P-canaliculata_contig100908.172.1|Name=mRNA_P-canaliculata_contig100908.172.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=240bp MMEGISYPIALEGNTGGNFTNSFVVFIDWNQNDILNDAGEVYQITETITNback to top mRNA from alignment at P-canaliculata_contig100908:298..1020- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100908.172.1 ID=mRNA_P-canaliculata_contig100908.172.1|Name=mRNA_P-canaliculata_contig100908.172.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=723bp|location=Sequence derived from alignment at P-canaliculata_contig100908:298..1020- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100908:298..1020- >mRNA_P-canaliculata_contig100908.172.1 ID=mRNA_P-canaliculata_contig100908.172.1|Name=mRNA_P-canaliculata_contig100908.172.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at P-canaliculata_contig100908:298..1020- (Pelvetia canaliculata dioecious)back to top |