Homology
BLAST of mRNA_P-canaliculata_contig1009.165.1 vs. uniprot
Match:
D7G0G0_ECTSI (ILEI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)
HSP 1 Score: 167 bits (422), Expect = 7.710e-45
Identity = 94/152 (61.84%), Postives = 110/152 (72.37%), Query Frame = 1
Query: 46 VARVRAMLASASPAHRLKGLEGA-----EGAALSRES--ESTAFRAKRDAALLLGYLDRLCEPYGPPQETMADSRVRYELEAASGGSEDGNFSRLLVRGHDWSSKEPGVNVLVLTEMLDAGGQMAKGFDIRESLDATNRLADYINAVAQGRT 480
+A R ML S+SP HR++GLE A G A S E + A+ AALLLGYL+RL EPYGPP+E +A+ RVR ELEAASGG +DGNFSRLLVRG D S KEPG+NVLVLTE LDAGGQ+A F ES+ A+NRLADY+N V QGRT
Sbjct: 1397 MAWARIMLGSSSPCHRVEGLEEAGLLDLHGPAGSGEEGGDKAVLCARGHAALLLGYLERLGEPYGPPEEDVAEPRVRCELEAASGGKDDGNFSRLLVRGEDRSCKEPGMNVLVLTETLDAGGQVATTFATHESVHASNRLADYLNNVPQGRT 1548
BLAST of mRNA_P-canaliculata_contig1009.165.1 vs. uniprot
Match:
A0A6H5K114_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K114_9PHAE)
HSP 1 Score: 164 bits (414), Expect = 9.240e-44
Identity = 93/152 (61.18%), Postives = 109/152 (71.71%), Query Frame = 1
Query: 46 VARVRAMLASASPAHRLKGLEGA-----EGAALSRES--ESTAFRAKRDAALLLGYLDRLCEPYGPPQETMADSRVRYELEAASGGSEDGNFSRLLVRGHDWSSKEPGVNVLVLTEMLDAGGQMAKGFDIRESLDATNRLADYINAVAQGRT 480
+A R ML S+SP+HR++GLE A G A S E + A+ AALLLGYL+RL EPYGPP+E +A+ RVR ELEAASGG +DGNFSRLLVRG D S KEPG+NVLVLTE LDAGGQ A F +S A+NRLADY+N V QGRT
Sbjct: 1171 MAWARIMLGSSSPSHRVEGLEEAGLLDLHGPAGSGEEGGDKAVLCARGHAALLLGYLERLGEPYGPPEEDVAEPRVRCELEAASGGKDDGNFSRLLVRGEDRSCKEPGMNVLVLTETLDAGGQAATTFATHQSEHASNRLADYLNNVPQGRT 1322
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1009.165.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 7.71e-45 / Id = 61.84 Expect = 9.24e-44 / Id = 61.18 Sequence D7G0G0_ECTSI A0A6H5K114_9PHAE
Match Name E-value Identity Description
D7G0G0_ECTSI 7.710e-45 61.84 ILEI domain-containing protein n=1 Tax=Ectocarpus ... [more] A0A6H5K114_9PHAE 9.240e-44 61.18 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 166.0 Seed ortholog evalue 1.4e-38 Seed eggNOG ortholog 2880.D7G0G0 KEGG ko ko:K21991 EggNOG free text desc. guanyl-nucleotide exchange factor activity EggNOG OGs COG5184@1,KOG1426@2759 COG Functional cat. DZ Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko03110 Hectar predicted targeting category other localisation Exons 3 Model size 483 Cds size 480 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815582.4281862-CDS-P-canaliculata_contig1009:1095..1270 1622815582.4281862-CDS-P-canaliculata_contig1009:1095..1270 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 1096..1270 - 1693494149.762471-CDS-P-canaliculata_contig1009:1095..1270 1693494149.762471-CDS-P-canaliculata_contig1009:1095..1270 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 1096..1270 - 1622815582.4397385-CDS-P-canaliculata_contig1009:1452..1529 1622815582.4397385-CDS-P-canaliculata_contig1009:1452..1529 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 1453..1529 - 1693494149.774316-CDS-P-canaliculata_contig1009:1452..1529 1693494149.774316-CDS-P-canaliculata_contig1009:1452..1529 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 1453..1529 - 1622815582.4521143-CDS-P-canaliculata_contig1009:2554..2782 1622815582.4521143-CDS-P-canaliculata_contig1009:2554..2782 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 2555..2782 - 1693494149.7821991-CDS-P-canaliculata_contig1009:2554..2782 1693494149.7821991-CDS-P-canaliculata_contig1009:2554..2782 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 2555..2782 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig1009.165.1
>prot_P-canaliculata_contig1009.165.1 ID=prot_P-canaliculata_contig1009.165.1|Name=mRNA_P-canaliculata_contig1009.165.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=160bp
FAPPPPPQTPPGHSPVARVRAMLASASPAHRLKGLEGAEGAALSRESEST back to top mRNA from alignment at P-canaliculata_contig1009:1094..2782-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1009.165.1 ID=mRNA_P-canaliculata_contig1009.165.1|Name=mRNA_P-canaliculata_contig1009.165.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1689bp|location=Sequence derived from alignment at P-canaliculata_contig1009:1094..2782- (Pelvetia canaliculata dioecious)TTCGCGCCGCCTCCTCCACCACAAACTCCTCCGGGACACTCGCCGGTCGC
GAGGGTGCGGGCCATGCTTGCGTCCGCATCACCAGCCCATCGCTTGAAGG
GACTAGAGGGTGCCGAGGGTGCAGCTCTCTCGCGAGAGAGCGAGTCGACG
GCGTTCCGTGCCAAGCGCGATGCGGCCCTGCTGTTGGGTTATTTGGACAG
GCTTTGCGAACCGTACGGTCCTCCACAG GTACGGGGCTATAGCTATACTG
CACAGGTATACCACACCACACCCCGGTTTTTTGTCTGGTTGATAGTTTTG
GCCGTTGACCATTTTTCGCTCCAAAACGAAGGCTATCTGTACACCCGGGT
GGGAGGTGTGACCCTATTTTTGTACCAAATACGTTTCAGTTGTACAGTAG
TGTACTGTAGTGCCAGCCAACGGGATAGGCGGGTGTGGTGTATGCCGTGC
TGCTATCAAAGAGAACTTCAAGTCGTCTGATATGTATGTATGGTCATCAC
ACATAGCAAGGGTAAGGATCAACCGGGTAAGGTTGCCAATCCTGCTTGTG
GTCAGCTGAACGGGAAGAATAAACATTTCCCTGTCCCCGCTCGCGCCTGA
GAATTTGGTCTCGCGAGACGGATTTAGCAGTCCCGTCCCGCGTCAGCCTG
CTCATCTCCATACTCAGGCTGAATCGGGTGCTTACGGGATTACTCCCGAG
TTCCGCGGCGGAGCCCATTTGGTAGTGTGATAGTTAGATGATGTGCAGGA
TCCAACGACCCCAATCTCTAAGCAATCAATAGGATTGTTGTCGAAAACTT
CCCCTCATTTTTTTAGTTTTGAGTGGATGAAAGGGGGCTTCTCTCCTGAT
CTAATAGGCTAAGCTACGAGTATCGATTATTACTGTGGTGAGTGTGTTCT
CCGACCAAAGTTCCCCTCCTCGCTCCGCCCAGAAAGTAATTCAAACCCTT
CCTTTTCACAAACGGGTTTGTTTTGGCTTTCGATTTGATCCCGATCCTTC
CCTTCCCGAAGTCTTTGAGTTGCCCACAGATACTCACTTATTAATAGTAT
AGCCGATGGGCCTTAACGTTACCATCGTGCCTGTGCTCCTTAAGGATCTT
TTCATCTTTCCCTGGTCCTCACCTATACTACCGACAGGATTGTTACATTA
ATAGTAAGTGTCACAGTATTAATAGAACAGAAGCTTTTCACTATTAATAG
ATAGAATGGCTTTGTTTCAATGCTTTCGTGTGTTTCTGCCGCATGTATGG
CAGGAAACGATGGCCGACTCCAGGGTGCGTTATGAGCTTGAGGCGGCCTC
TGGTGGATCAGAAGATGGAAACTTCTCCAG GTTCTGTACTGTATTGTACC
ATACTGTATTATATTGCACCATACCAGTACGGTACAGGCTCCGTATTACA
GTATTACACCGTACCAGTATTTTCCTGGGATTGGTCTTCAGTACTGCTAC
TTTATATTGATGCTGTAATTGAATCAAATGTAACCCGCTGCTGTGTGTCG
TTTGTCTTGAAGGCTGCTAGTGCGAGGACATGATTGGAGCAGCAAGGAGC
CGGGGGTCAACGTCCTCGTCTTGACGGAGATGCTGGACGCCGGGGGCCAG
ATGGCGAAGGGCTTCGACATCCGCGAATCTCTCGACGCCACCAACCGGCT
CGCCGACTACATCAACGCCGTTGCGCAGGGTCGGACG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig1009:1094..2782-
>mRNA_P-canaliculata_contig1009.165.1 ID=mRNA_P-canaliculata_contig1009.165.1|Name=mRNA_P-canaliculata_contig1009.165.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at P-canaliculata_contig1009:1094..2782- (Pelvetia canaliculata dioecious) back to top