mRNA_P-canaliculata_contig100804.159.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100804.159.1 vs. uniprot
Match: A0A518EMZ4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EMZ4_9BACT) HSP 1 Score: 166 bits (421), Expect = 1.960e-50 Identity = 81/129 (62.79%), Postives = 97/129 (75.19%), Query Frame = 1 Query: 1 MLINPDSGTDFDDFVVVEEGEYLMRIGSVKKSESTPDRSAWMLRMELVEGPLAGRTAVTDWLNFTDRGLHRVRLILDVLGFDVSKAIDVAADDLVGRVARLRITTEETARPADGRIQRRSRVPYDGWSP 387 M I+PD GT DD+VVVEEG Y +R+ SV+++ S AWMLRM LVEG AGRTAVTDWLNFTDRG+HRVR IL LG+DVS ++V + L+G VA +R+ +ET P GRIQRRSRVPYDGWSP Sbjct: 1 MQIDPDVGTGVDDYVVVEEGTYPLRVESVRETRSPDGEVAWMLRMALVEGERAGRTAVTDWLNFTDRGMHRVRSILGALGWDVSVPVEVEPEHLIGLVANVRLINQETTHPDTGRIQRRSRVPYDGWSP 129
BLAST of mRNA_P-canaliculata_contig100804.159.1 vs. uniprot
Match: A0A2D6HBI7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HBI7_9BACT) HSP 1 Score: 102 bits (253), Expect = 4.570e-25 Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 1 Query: 28 DFDDFVVVEEGEYLMRIGSVKKSESTPDRSAWMLRMELVEGPLAGRTAVTDWLNFTDRGLHRVRLILDVLGFDVSKAIDVAADDLVGRVARLRITTEETARPADGRIQRRSRVPYDGWSPGE 393 D + V EG YL R+ V++ ++ W LR+E+ EG L GRTA D + +++RG+HRV+L+LD LG + +++A D+LV +++ EE P GR + R+RVPYDG+ P + Sbjct: 10 DVVSYASVPEGHYLCRVVEVREGQARDGSPRWNLRLEVAEGALVGRTAAWDSITWSERGIHRVKLVLDCLGIETDGVVEIATDELVDLETCVQVVLEEREDPLSGRRELRNRVPYDGYVPAD 131
BLAST of mRNA_P-canaliculata_contig100804.159.1 vs. uniprot
Match: A0A523PVM7_9BACT (DUF669 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PVM7_9BACT) HSP 1 Score: 98.2 bits (243), Expect = 1.820e-23 Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1 Query: 28 DFDDFVVVEEGEYLMRIGSVKKSESTPDRSAWMLRMELVEGPLAGRTAVTDWLNFTDRGLHRVRLILDVLGFDVSKAIDVAADDLVGRVARLRITTEETARPADGRIQRRSRVPYDGWSP 387 D D F V EG+Y RI V+ +S W R+E+V+G AGRTA D L ++DRG+ RV+ +L+ LGFDV +++ + DL+GR A + + TEE GR Q R VPY G++P Sbjct: 10 DQDSFNSVPEGQYSCRIAEVRTGQSRDGSERWRFRLEVVDGDYAGRTAAWDSLTWSDRGIFRVKKVLEALGFDVEGEMEIDSQDLMGRRATVVLETEEWEDAISGRRQIRMSVPYLGYAP 129
BLAST of mRNA_P-canaliculata_contig100804.159.1 vs. uniprot
Match: A0A2E6D7C4_9BACT (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2E6D7C4_9BACT) HSP 1 Score: 97.1 bits (240), Expect = 6.480e-23 Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 1 Query: 28 DFDDFVVVEEGEYLMRIGSVKKSESTPDRSAWMLRMELVEGPLAGRTAVTDWLNFTDRGLHRVRLILDVLGFDVSKAIDVAADDLVGRVARLRITTEETARPADGRIQRRSRVPYDGWSP 387 D FV + G Y RI V+ E+ W LR+E+++G AGRTA D L +++RG+ RV+ +L VLGFDVS +DV ++L GR A + + E P GR R VP+ GW+P Sbjct: 10 DTQSFVAIPPGSYACRIAEVRPGEARNGAVRWSLRLEVLDGEYAGRTAAWDSLTWSERGVQRVKFVLGVLGFDVSGHLDVEPEELEGRQALVEVFPEVWEEPETGRRLERLSVPFAGWAP 129
BLAST of mRNA_P-canaliculata_contig100804.159.1 vs. uniprot
Match: A0A800BAM3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800BAM3_9BACT) HSP 1 Score: 93.2 bits (230), Expect = 1.770e-21 Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 1 Query: 28 DFDDFVVVEEGEYLMRIGSVKKSESTPDRSAWMLRMELVEGPLAGRTAVTDWLNFTDRGLHRVRLILDVLGFDVSKAIDVAADDLVGRVARLRITTEETARPADGRIQRRSRVPYDGWSPGE 393 D + FV++ EG +L++I V+ E+ W LR+ +V+G AGRTA D L ++ RGL RV+ +L VLGFD A+ VA DL G+ A + EE P GR +R VP+ G+ P E Sbjct: 35 DVESFVLIPEGRHLVQIAEVRTGETRAGHMRWALRLAVVDGEFAGRTAAWDGLVWSKRGLPRVKHVLSVLGFDTEGALQVAPADLCGKRAVVDFFVEEWENPDTGRSTQRLAVPFLGYEPIE 156
BLAST of mRNA_P-canaliculata_contig100804.159.1 vs. uniprot
Match: A0A7Y5PZ57_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5PZ57_9PLAN) HSP 1 Score: 92.4 bits (228), Expect = 2.110e-21 Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 1 Query: 28 DFDDFVVVEEGEYLMRIGSVKKSESTPDRSAWMLRMELVEGPLAGRTAVTDWLNFTDRGLHRVRLILDVLGFDVSKAIDVAADDLVGRVARLRITTEETARPADGRIQRRSRVPYDGWSP 387 D + FV + EG Y R+ V++ S W LR+E+ G AGRTA D L +++RG+ RV+ +L+ LG DV ++DV DL+ R A ++ EE P GR R RVPY G++P Sbjct: 10 DIESFVSIPEGPYYCRVAEVREGVSRDGSPRWNLRLEVSRGEYAGRTAGWDSLTWSERGIRRVKRVLESLGLDVRGSLDVEPADLLNREAHVQFEPEEREDPLTGRRSVRLRVPYAGFAP 129
BLAST of mRNA_P-canaliculata_contig100804.159.1 vs. uniprot
Match: A0A2D5XR28_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XR28_9BACT) HSP 1 Score: 81.3 bits (199), Expect = 6.170e-17 Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1 Query: 49 VEEGEYLMRIGSVKKSESTPDRSAWMLRMELVEGPLAGRTAVTDWLNFTDRGLHRVRLILDVLGFDVSKAIDVAADDLVGRVARLRITTEETARPADGRIQRRSRVPYDGWS 384 V G ++ I V++ S W +++E++EG AG A D + +++RG+HRVR +L VLGF+V ++V DLVG+ AR+R+ E P G + + VPY+GW+ Sbjct: 17 VPAGVHICAIREVREGLSRDGSPRWSMKLEVLEGEHAGHHAAWDSITWSERGIHRVRSVLGVLGFNVEGELEVNPADLVGKEARVRLVEEVYEDPLLGSRREQLAVPYNGWA 128 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100804.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100804.159.1 >prot_P-canaliculata_contig100804.159.1 ID=prot_P-canaliculata_contig100804.159.1|Name=mRNA_P-canaliculata_contig100804.159.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=131bp MLINPDSGTDFDDFVVVEEGEYLMRIGSVKKSESTPDRSAWMLRMELVEGback to top mRNA from alignment at P-canaliculata_contig100804:398..790+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100804.159.1 ID=mRNA_P-canaliculata_contig100804.159.1|Name=mRNA_P-canaliculata_contig100804.159.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at P-canaliculata_contig100804:398..790+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100804:398..790+ >mRNA_P-canaliculata_contig100804.159.1 ID=mRNA_P-canaliculata_contig100804.159.1|Name=mRNA_P-canaliculata_contig100804.159.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at P-canaliculata_contig100804:398..790+ (Pelvetia canaliculata dioecious)back to top |