mRNA_P-canaliculata_contig100789.153.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 155 bits (391), Expect = 1.310e-39 Identity = 80/151 (52.98%), Postives = 106/151 (70.20%), Query Frame = 2 Query: 2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPRFRRSSNNP*MIQGYWL*NGVVAPLDAVARR 454 CGRR+LLAGVVVFI+PNTAAQIA TL +A F+ VSE +AP+ S+WDAW++R+GH ++FV++Y+ALLLKVDVSGE SQ+ + +V+VA H CMILAV+ E ++T LK QR++P+ RFR G L + P A RR Sbjct: 1128 CGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTETFVLTWSLKV-EQRQEPTTRFRHGKL---FRSGRGLESAQDDPFSADLRR 1274
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 151 bits (382), Expect = 2.220e-38 Identity = 75/122 (61.48%), Postives = 95/122 (77.87%), Query Frame = 2 Query: 2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPRF 367 CGRR+LLAGVVVFIYPNTA QIA TL +A F+ VSE +APY S+WD W+SR GHA++FV++YVALLLKVDVS E SQ+ F VV+VA H CMIL +V+E +++T L G +R+ P+ RF Sbjct: 1939 CGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVLTCALTVG-ERDGPALRF 2059
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: A0A6H5KP34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP34_9PHAE) HSP 1 Score: 137 bits (346), Expect = 3.590e-37 Identity = 71/121 (58.68%), Postives = 88/121 (72.73%), Query Frame = 2 Query: 2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPR 364 CGRRILL G+VVF+YPNTAAQIA TL + VF +SEA+ P WD W+SR HA++F+++YVALLLKVDVS E SSQK F V+VA H CM+LAVVVE I++ + Q E P+PR Sbjct: 28 CGRRILLTGLVVFMYPNTAAQIAITLIMTVVFAVLSEALHPNAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSDEKRSSQKVFEAVLVAAHACMVLAVVVETIVLGCPSRVKEQHE-PAPR 147
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 143 bits (361), Expect = 1.320e-35 Identity = 72/121 (59.50%), Postives = 92/121 (76.03%), Query Frame = 2 Query: 2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPR 364 CGRRILL G+VVFIYPNTAAQIA TL + VF +SEA+ PY WD W+SR HA++F+++YVALLLKVDVS E SSQK F V+VA H CMILAVVVE I++ + +++++P+PR Sbjct: 889 CGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGCPSRV-KEQDEPAPR 1008
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 143 bits (361), Expect = 1.460e-35 Identity = 72/121 (59.50%), Postives = 92/121 (76.03%), Query Frame = 2 Query: 2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPR 364 CGRRILL G+VVFIYPNTAAQIA TL + VF +SEA+ PY WD W+SR HA++F+++YVALLLKVDVS E SSQK F V+VA H CMILAVVVE I++ + +++++P+PR Sbjct: 2627 CGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGCPSRV-KEQDEPAPR 2746
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI) HSP 1 Score: 141 bits (356), Expect = 3.810e-35 Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = 2 Query: 2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKG 334 CG R+LLAGVVVFIYP+TAAQIA TL IA F+ VSE ++PY S+WD W++R GH ++FV+++VALLLKVDV+ E SSQK F V+VA H CM+L VV+E I++T L+G Sbjct: 570 CGWRVLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAIVLTSSLRG 680
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 138 bits (347), Expect = 1.040e-33 Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 Query: 2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQR-EDPSPRFR 370 C RR+LLAGVVVFIYPNTAAQIA TL IA F +SE +APY S+WD WISR GH ++F+++YVALLLKVDVS E SSQ+ F V+VA H CMIL V+VE + L+ R+ SPRFR Sbjct: 1384 CFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEAAVQAWSLREERRSLSAASPRFR 1507
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 137 bits (345), Expect = 1.940e-33 Identity = 70/141 (49.65%), Postives = 93/141 (65.96%), Query Frame = 2 Query: 2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQR-----EDPSPRFRRSSNNP*MIQGYW 409 C RR+LLAGVVVFIYPN++AQIA TL +A F+ +SE +APY S+WD WI+R GH ++ ++Y+ALLLKVDVS E +SSQ F V+V H M++ V E +++ L L+ R+R ED PRFR S M W Sbjct: 1484 CARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAETLVLALALRAERRRDQHLQEDRLPRFRSSGKAKAMQTHKW 1624
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 135 bits (341), Expect = 6.560e-33 Identity = 68/124 (54.84%), Postives = 90/124 (72.58%), Query Frame = 2 Query: 2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPRFRR 373 CGRR+LL G++VFIYPNTAAQ+A TL +A F +SEA++PY S+W+ W++R GH ++ V++YVALLLKVDVS E SQ F V+V H CMIL+VVVE ++ L + + RED RFRR Sbjct: 1358 CGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVAGLWRQ-KLREDVPARFRR 1480
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 135 bits (340), Expect = 8.880e-33 Identity = 71/124 (57.26%), Postives = 89/124 (71.77%), Query Frame = 2 Query: 2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPRFRR 373 CGRRILL G+VVFIYPNTAAQ+A TL +A F +SEA++PY S+W+ W++R GH ++ V++YVALLLKVDVS E SQ F V+V H CMIL+VVVE ++ L R RED RFRR Sbjct: 1299 CGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVAGLWTR-RLREDLPARFRR 1421 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100789.153.1 >prot_P-canaliculata_contig100789.153.1 ID=prot_P-canaliculata_contig100789.153.1|Name=mRNA_P-canaliculata_contig100789.153.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=92bp MAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVback to top mRNA from alignment at P-canaliculata_contig100789:2..710+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100789.153.1 ID=mRNA_P-canaliculata_contig100789.153.1|Name=mRNA_P-canaliculata_contig100789.153.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=709bp|location=Sequence derived from alignment at P-canaliculata_contig100789:2..710+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100789:2..710+ >mRNA_P-canaliculata_contig100789.153.1 ID=mRNA_P-canaliculata_contig100789.153.1|Name=mRNA_P-canaliculata_contig100789.153.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig100789:2..710+ (Pelvetia canaliculata dioecious)back to top |