mRNA_P-canaliculata_contig10075.150.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Match: A0A6H5KE48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE48_9PHAE) HSP 1 Score: 517 bits (1332), Expect = 1.780e-177 Identity = 255/299 (85.28%), Postives = 273/299 (91.30%), Query Frame = 1 Query: 646 DGAAGRGKLPLPFFEVESVGLRGRWEEMGGNFLLRPPDGQAPKALLHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLTVCAGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELILPLVTQVLKDGGGQPALFSTLSLLRETVDNLVDG-----VVESPFAPALLENEVVPLVRQVLQIVDQLPALFQQVADGTREFTPTPSETRDVVSKMYRARRTILVRFENDSIDESEEMKGIIQEGKTLLRMKVSCLD 1527
DGA G G+LPLPFF+VESVGL+GRWEEMGGNFLLRPPD QAPKAL+HFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYL VC GILDRFE+AAVPLAA+YGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVS+AVPGFEEL+LPLV QVLK+GGGQ LFSTL +LRETVDNLVDG V ES FAPA+LENEVVPLVRQVLQI DQLPAL Q +ADG REFTPTP ETRDVVSKMYRARRTI++RFENDS+DESE MK +IQEGKTLLRM+ +D
Sbjct: 30 DGAGGSGRLPLPFFDVESVGLKGRWEEMGGNFLLRPPDDQAPKALVHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLNVCDGILDRFEQAAVPLAAQYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSEAVPGFEELVLPLVMQVLKEGGGQSTLFSTLEMLRETVDNLVDGQVLGVVAESRFAPAVLENEVVPLVRQVLQITDQLPALLQSIADGAREFTPTPEETRDVVSKMYRARRTIMIRFENDSLDESERMKDVIQEGKTLLRMRRPLVD 328
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Match: A0A4D9DB40_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DB40_9STRA) HSP 1 Score: 369 bits (946), Expect = 1.990e-117 Identity = 179/295 (60.68%), Postives = 226/295 (76.61%), Query Frame = 1 Query: 682 FFEVESVGLRGRWEEMGGNFLLRPPDGQA--PKALLHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLTVCAGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELILPLVTQVL-KDG---------------GGQPALFSTLSLLRETVDNLVDGVVESPFAPALLENEVVPLVRQVLQIVDQLPALFQQVADGTREFTPTPSETRDVVSKMYRARRTILVRFENDSIDESEEMKGIIQEGKTLLRMK 1512
F +V+++GL GRWEE+GGNFLLRPPD + PKA+LHFLGGAFVGAAPHLTY YLL+GLAE G+LVVATPY L FDY+ VC +L+RFER A+PLA EYGALPVVGIGHSCGALLQ+LITCLFPDTPR ANALISFNN+ A+P FEEL++PL ++ +DG G AL +L LR+ + +V+ SP AP++++NEVVPLV+Q + +VDQLP L Q ++DG REF PTP +TR+V +MYRARRT+LVRFE+DSIDESE + ++QE ++++RMK
Sbjct: 190 FLDVKTMGLMGRWEEIGGNFLLRPPDHETSPPKAVLHFLGGAFVGAAPHLTYRYLLTGLAEQGYLVVATPYNLSFDYVQVCDTVLERFERVAIPLAKEYGALPVVGIGHSCGALLQVLITCLFPDTPRLANALISFNNQMAQKAIPAFEELVVPLSLSLMGEDGLGAETPSMTGEGGALGPGTALRQSLGRLRQNFEEVVEAYAASPLAPSVVQNEVVPLVKQAMSVVDQLPPLLQSISDGAREFAPTPDDTREVCRRMYRARRTLLVRFEDDSIDESENLMKVLQESRSIMRMK 484
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Match: D7G7C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C9_ECTSI) HSP 1 Score: 357 bits (916), Expect = 2.730e-116 Identity = 177/206 (85.92%), Postives = 191/206 (92.72%), Query Frame = 1 Query: 910 TVCAGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELILPLVTQVLKDGGGQPALFSTLSLLRETVDNLVDGVVESPFAPALLENEVVPLVRQVLQIVDQLPALFQQVADGTREFTPTPSETRDVVSKMYRARRTILVRFENDSIDESEEMKGIIQEGKTLLRMKVSCLD 1527
TVC GILDRFE+AAVPLAA+YGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVS+AVPGFEEL+LPLV QVLK+GGGQ LFSTL +LRETVDNLVDGVVES FAPA+LENEVVPLVRQVLQI DQLPAL Q +ADGTREFTPTP ETRDVVSKMYRARRTI++RFENDS+DESE MK +IQEGKTLLRM+ +D
Sbjct: 14 TVCDGILDRFEQAAVPLAAQYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSEAVPGFEELVLPLVMQVLKEGGGQSTLFSTLEMLRETVDNLVDGVVESRFAPAVLENEVVPLVRQVLQITDQLPALLQSIADGTREFTPTPEETRDVVSKMYRARRTIMIRFENDSLDESEGMKDVIQEGKTLLRMRRPLVD 219
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Match: A0A835ZET8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET8_9STRA) HSP 1 Score: 328 bits (841), Expect = 4.380e-105 Identity = 166/262 (63.36%), Postives = 198/262 (75.57%), Query Frame = 1 Query: 742 LLRPPDGQAPKALLHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLTVCAGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELILPLVTQVLKDGGGQPALFSTLSLLRETVDNLVDGVVESPFAPALLENEVVPLVRQVLQIVDQLPALFQQVADGTREFTPTPSETRDVVSKMYRARRTILVRFENDSIDESEEMKGIIQEGKTLLRMKVSCLD 1527
+LRPP+G A + ++HFLGGAFVGAAPHLTY+YLLSGLAE+GF+VVATPY LGFDYL VC IL+RFE AA+PLA EYGALPV+GIGHS GALLQLLITCLFPDTPRAANAL+SFNNKPV A E I T + +LV+ V+SP APA E E++PL +Q L++V+QLP LFQQVADG REFTPTP E +VV +MYRARRT++VRF+NDSIDESEE++ +IQ GKTLLRM+ +D
Sbjct: 1 MLRPPEGTAARGVIHFLGGAFVGAAPHLTYSYLLSGLAEVGFVVVATPYQLGFDYLQVCDAILERFELAALPLAEEYGALPVIGIGHSLGALLQLLITCLFPDTPRAANALVSFNNKPVKQAAA---EAIWEARTSAM---------------------DLVESFVKSPLAPAAAETELLPLAKQALELVEQLPPLFQQVADGAREFTPTPDEVEEVVRRMYRARRTLVVRFDNDSIDESEEVREVIQAGKTLLRMRRPMVD 238
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Match: A0A7R9U991_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U991_9STRA) HSP 1 Score: 314 bits (805), Expect = 5.970e-97 Identity = 148/284 (52.11%), Postives = 203/284 (71.48%), Query Frame = 1 Query: 676 LPFFEVESVGLRGRWEEMGGNFLLRPPDGQAPKALLHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLTVCAGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELILPLVTQVLKDGGGQPALFSTLSLLRETVDNLVDGVVESPFAPALLENEVVPLVRQVLQIVDQLPALFQQVADGTREFTPTPSETRDVVSKMYRARRTILVRFENDSIDESEEMKGIIQEGKTLLRMKVSCLD 1527
P F++ES+G+ G WEE+GGN +LRPPDG P+A++HFLGGAFVGA P + Y YLL LA+ GFL+VATPY L FDYL +C I++RF++AA+PLA EYG LPVVGIGHS GALL LIT LFP+TPRA N LIS+NN+P +DA+P FEE I+P+ V D L ++ R L+D ++ P + E+ PLV+Q + QLP+L ++VADG REF+PTP++TR+V+ K+YRARRT+++ F++D+IDESE + ++E ++ RMK +D
Sbjct: 160 FPAFDIESLGIGGDWEELGGNLVLRPPDGAQPRAVIHFLGGAFVGATPAIAYRYLLQNLAKEGFLIVATPYKLQFDYLKICDSIIERFDQAAIPLAEEYGGLPVVGIGHSAGALLHSLITSLFPETPRAGNVLISWNNRPAADAIPAFEETIVPVSKAVWGDSAPARDLRRRIATTRRRSFALLDTALKQGLLPTFWKKELYPLVQQADGALQQLPSLLKEVADGVREFSPTPADTRNVLRKLYRARRTLVIGFDDDTIDESEVVVACLRESTSVWRMKRPMID 443
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Match: A0A0G4G6R9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G6R9_VITBC) HSP 1 Score: 320 bits (820), Expect = 9.560e-97 Identity = 148/274 (54.01%), Postives = 202/274 (73.72%), Query Frame = 1 Query: 700 VGLRGRWEEMGGNFLLRPPDGQAPKALLHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLTVCAGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELILPLVTQVLKDGGGQPA--LFSTLSLLRETVDNLVDGVVESPFAPALLENEVVPLVRQVLQIVDQLPALFQQVA-DGTREFTPTPSETRDVVSKMYRARRTILVRFENDSIDESEEMKGIIQEGKTLLRMK 1512
VGL G WEEM GNFLLRPP P+AL+HFLGGAFVGAAPHLTY Y L+GLAE GFLVVA+PY L FDYL C ILDRFE+ A+PLA EYGALPVVG+GHSCGALL LLI+CLFP TPRA N LISFNNKP ++A+P FEE+++P+ +Q++ L + LR +VD+ + P+ + EV+PL +Q L+++DQ+P L +A + REF PTP+E ++ ++MYR RRT+LV+F+ND+IDE++ ++ ++++ +++R++
Sbjct: 383 VGLMGEWEEMSGNFLLRPPPDLRPRALIHFLGGAFVGAAPHLTYRYFLTGLAEQGFLVVASPYRLSFDYLETCDSILDRFEKIAIPLAREYGALPVVGVGHSCGALLHLLISCLFPGTPRAGNVLISFNNKPAAEAIPFFEEVVVPIASQLMNSRTQSVPGNLRELVRFLRTSVDDFAEASSNFILTPSFYKREVIPLFKQTLEVIDQVPGLLDAIAKEDVREFEPTPAEVKEAATRMYRTRRTLLVQFDNDAIDETDAVETVLKDAASIVRLQ 656
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Match: A0A7S1U6M1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6M1_9STRA) HSP 1 Score: 306 bits (783), Expect = 1.160e-93 Identity = 143/279 (51.25%), Postives = 199/279 (71.33%), Query Frame = 1 Query: 676 LPFFEVESVGLRGRWEEMGGNFLLRPPDGQAPKALLHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLTVCAGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELILPLVTQVLKDGGGQPALFSTLSLLRETVDNLVDGVVESPFAPALLENEVVPLVRQVLQIVDQLPALFQQVADGTREFTPTPSETRDVVSKMYRARRTILVRFENDSIDESEEMKGIIQEGKTLLRMK 1512
LP F++ES+GL G WE++GGN +LRPP+GQ +A++HFLGGAFVGA P L Y YLL LA GF++VATPY L FDYL++C +++RF+ AA+PLA EYGA+PVVG+GHSCGALLQ LIT LFP+TPR N LIS+NN+P ++AVPGFE I+PL + + L ++ R V+ ++ P + E+ PLV Q + QLP+L ++VA+G REFTP PS+TR ++ K+YRARRT+++ F++D+IDESE + ++E ++ RMK
Sbjct: 174 LPAFDIESLGLSGDWEDIGGNLVLRPPEGQEARAVVHFLGGAFVGATPSLAYRYLLKRLAAEGFVIVATPYKLEFDYLSICDAVIERFDAAALPLAQEYGAIPVVGVGHSCGALLQSLITSLFPETPRVGNVLISWNNRPAAEAVPGFETTIIPLSKALFAESRAAKDLRKRIAQTRRRSFMFVESALKQGLLPTVWRKELYPLVCQADDAISQLPSLLKEVAEGKREFTPDPSQTRILLRKLYRARRTLVLGFDDDTIDESEVVVSCLRESTSVWRMK 452
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Match: A0A7S0CE30_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE30_9STRA) HSP 1 Score: 287 bits (734), Expect = 5.880e-88 Identity = 145/302 (48.01%), Postives = 194/302 (64.24%), Query Frame = 1 Query: 712 GRWEEMGGNFLLRPPDGQAPKALLHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLTVCAGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELILPLVTQVLKDGGGQPALFSTLSLLRETV------DNLVDGVVES-----------------------------PFAPALLENEVVPLVRQVLQIVDQLPALFQQVADGTREFTPTPSETRDVVSKMYRARRTILVRFENDSIDESEEMKGIIQEGKTLLRMK 1512
GRWEEM GN++L PP Q P+AL+HFLGGAFVGAAPH+ Y Y+L L++ G+L+VATP+ L FDYLT C I+D+FER A LA +YGA+PVVG+G SCGALLQLLIT LFPDTPRAAN L+SFNNK VS+AVP FEE+ PL + + GG L S L L R D L+ V + P + AL E ++ ++ Q L ++DQ+P L +VADG R+F P P + + YRARRT+L++++ND IDESEE++ +++E ++++RMK
Sbjct: 27 GRWEEMHGNYVLAPPSMQQPRALIHFLGGAFVGAAPHVAYRYILERLSDRGYLIVATPFNLSFDYLTTCDSIIDKFERIAPMLARQYGAVPVVGVGQSCGALLQLLITSLFPDTPRAANVLLSFNNKEVSEAVPFFEEVFAPLFVGISEGVGGTAKLESLLDLARAAALGELPSDELLSDVSNNFASGLPLPFTQEQMSIPSALRENIASAIQPTSTALNEAGILSILNQGLDVIDQIPLLVNEVADGARDFVPPPDMVKTAARRAYRARRTLLIQYKNDGIDESEEVEELLKEAESIMRMK 328
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Match: A0A7S2LK51_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LK51_9STRA) HSP 1 Score: 275 bits (703), Expect = 2.860e-81 Identity = 145/324 (44.75%), Postives = 197/324 (60.80%), Query Frame = 1 Query: 709 RGRWEEMGGNFLLRPPDGQAPKALLHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLTVCAGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELILPLVT-------QVLK-----------------------------------------------DGGG--QPALFSTLSLLRETVDNLVDGVVESPFAPALLENEVVPLVRQVLQIVDQLPALFQQVADGTREFTPTPSETRDVVSKMYRARRTILVRFENDSIDESEEMKGIIQEGKTLLRMK 1512
+GRWEE+ GN++LRPP Q P+ALLHFLGGA VGA+P LTY YLL L+ G+L+VATPY L FD+LT C I+D+FE+ A LA EYGA+PVVG+GHSCG+LL +LIT LFPDTPRAANAL+S+NN+ V +AVP FEELI+PL + +++K DGGG P+L S LRE++ NL+ P AL + PL+ Q L I Q+P L +V DG R+F PTP + YR RRT+L++FEND++D+SE+++ ++E +++++MK
Sbjct: 167 QGRWEELHGNYILRPPPSQPPRALLHFLGGALVGASPQLTYRYLLERLSSNGYLIVATPYQLSFDHLTTCDEIIDKFEKVAPMLAREYGAVPVVGVGHSCGSLLHVLITSLFPDTPRAANALLSYNNRGVGEAVPFFEELIVPLFSDKERNGSRLIKAAIEVARDKYNGRVPSDEVLFNFIKELPSPIPGQSVNSLLGAFLGGGDGGGLLSPSLISIPKPLRESLTNLL----AEPTFDALTNAGITPLLLQSLDITQQIPKLIDEVEDGARDFVPTPDAMSSAARRAYRCRRTLLMQFENDNLDDSEQLESYLREAESVMKMK 486
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Match: B5YNZ7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNZ7_THAPS) HSP 1 Score: 266 bits (679), Expect = 8.670e-80 Identity = 134/268 (50.00%), Postives = 182/268 (67.91%), Query Frame = 1 Query: 712 GRWEEMGGNFLLRPP-DGQAPKALLHFLGGAFVGAAPHLTYNYLLSGLAEMGFLVVATPYPLGFDYLTVCAGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELILPLVTQVLKDGGGQPALFSTLSLLRETVDNLVDGVVESPFAPALLENEVVPLVRQVLQIVDQLPALFQQVADGTREFTPTPSETRDVVSKMYRARRTILVRFENDSIDESEEMKGIIQEGKTLLRMK 1512
GRWEE+ GN++LRPP + Q P+ALLHFLGGA +GAAP LTY YLL L+ G+L+VATPY L FD+L C I+D+FER A LA +YG +PVVG+GHSCGALL +LIT LFPDTPRAANALIS+NN+ V +AVP F+EL L P+L + + LR+T+ N + P AL V L+ Q L I Q+P L +V G R+F PTP + YR RRT+L++FE+D++D+SE+++G ++E +++++MK
Sbjct: 51 GRWEELHGNYILRPPNEQQPPRALLHFLGGALLGAAPQLTYRYLLERLSSRGYLIVATPYELSFDHLGTCDEIIDKFERVAPSLAKQYGPVPVVGVGHSCGALLHMLITSLFPDTPRAANALISYNNRGVGEAVPLFDELSLL-----------NPSLLTIPTPLRQTLTNFLT----EPTYGALTNAGVTQLLVQSLDITQQIPKLIDEVEAGARDFVPTPDAMSSAARRAYRCRRTLLLQFESDNLDDSEQLEGYLKEAESVMKMK 303 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10075.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10075.150.1 >prot_P-canaliculata_contig10075.150.1 ID=prot_P-canaliculata_contig10075.150.1|Name=mRNA_P-canaliculata_contig10075.150.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=502bp MEGVPRPCKDGRTMDSPLDVRNRSQRLRRRPAAKPSATTAFAAAAVLCVAback to top mRNA from alignment at P-canaliculata_contig10075:3410..11642+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10075.150.1 ID=mRNA_P-canaliculata_contig10075.150.1|Name=mRNA_P-canaliculata_contig10075.150.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=8233bp|location=Sequence derived from alignment at P-canaliculata_contig10075:3410..11642+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10075:3410..11642+ >mRNA_P-canaliculata_contig10075.150.1 ID=mRNA_P-canaliculata_contig10075.150.1|Name=mRNA_P-canaliculata_contig10075.150.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3012bp|location=Sequence derived from alignment at P-canaliculata_contig10075:3410..11642+ (Pelvetia canaliculata dioecious)back to top |