mRNA_P-canaliculata_contig100725.146.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Match: A0A518HN18_9BACT (Ankyrin repeat protein n=2 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HN18_9BACT) HSP 1 Score: 131 bits (330), Expect = 4.220e-36 Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 1 MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMFALQCRNFDIANHLLDRGADASAEMADGPRSSVLGLCCNFAYFDSENHDQWITLAVRLLDQG 333
M K KR+FKAI+DDD L+++L + DAIE+ G HNR VRDKTPLM+ALQC N +A HLLDRGA+ SA M DGPR SV+ +C A+ + HD+WI +RLLD G
Sbjct: 4 MKKADIKRMFKAIEDDDQQTLDSLLNTNDDAIESHGFHNRLVRDKTPLMYALQCFNLKLAGHLLDRGANPSAVMPDGPRHSVIQMCIARAFCNKSTHDEWIAFTIRLLDAG 114
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Match: A0A4R5HH35_9ALTE (Ankyrin repeat domain-containing protein n=1 Tax=Alteromonadaceae bacterium M269 TaxID=2546219 RepID=A0A4R5HH35_9ALTE) HSP 1 Score: 115 bits (288), Expect = 2.540e-30 Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 1 Query: 1 MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMFALQCRNFDIANHLLDRGADASAEMADGPRSSVLGLCCNFAYFDSENHDQWITLAVRLLDQGAN 339
M KT TK+LF AIQ D + +I+ ++ AIE++G+HN RDKTPLMFA+QC +F++A L+D GA+ A+M DGP SSV+ L +F + + N D+WI L RL++ GAN
Sbjct: 1 MTKTETKKLFVAIQKHDHETVFSIIEKNEGAIESVGQHNAYCRDKTPLMFAMQCEDFELAYKLMDIGANVRAKMLDGPESSVIQLAASFGHSLNPNFDKWIGLIQRLIENGAN 113
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Match: UPI0016024DEC (hypothetical protein n=1 Tax=unclassified Pseudoalteromonas TaxID=194690 RepID=UPI0016024DEC) HSP 1 Score: 107 bits (266), Expect = 5.170e-27 Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 1 Query: 1 MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMFALQCRNFDIANHLLDRGADASAEMADGPRSSVLGLCCNFAYFDSENHDQWITLAVRLLDQGAN 339
M K K+LF AI+ D ++ IL + IE +G HN N RDKTPLM+A+QC +F++AN L++ GA+ A+M GP +SV+ L F + + N D+W++ +L++QGAN
Sbjct: 1 MTKAEIKKLFVAIEKHDQDSVLGILAKDKGVIETVGHHNANCRDKTPLMYAMQCEDFELANKLIELGANVKAKMPAGPETSVIQLAVKFGHGLNPNFDKWLSFTQKLIEQGAN 113 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100725.146.1 >prot_P-canaliculata_contig100725.146.1 ID=prot_P-canaliculata_contig100725.146.1|Name=mRNA_P-canaliculata_contig100725.146.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=113bp MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMFback to top mRNA from alignment at P-canaliculata_contig100725:49..387+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100725.146.1 ID=mRNA_P-canaliculata_contig100725.146.1|Name=mRNA_P-canaliculata_contig100725.146.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at P-canaliculata_contig100725:49..387+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100725:49..387+ >mRNA_P-canaliculata_contig100725.146.1 ID=mRNA_P-canaliculata_contig100725.146.1|Name=mRNA_P-canaliculata_contig100725.146.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at P-canaliculata_contig100725:49..387+ (Pelvetia canaliculata dioecious)back to top |