mRNA_P-canaliculata_contig100650.141.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A2H4FS16_9FLOR (Acyl carrier protein n=4 Tax=Solieriaceae TaxID=31441 RepID=A0A2H4FS16_9FLOR) HSP 1 Score: 62.8 bits (151), Expect = 7.180e-12 Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1 Query: 1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHKD 129 DSLDMVELVMAIEEEF+IDIPDS LE I V+DA+DYI KH D Sbjct: 39 DSLDMVELVMAIEEEFNIDIPDSYLEKIVTVNDAVDYIIKHID 81
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: R5Q0G4_9PROT (Acyl carrier protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=R5Q0G4_9PROT) HSP 1 Score: 57.0 bits (136), Expect = 1.280e-9 Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 1 Query: 1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKH 123 DSLD VELVMA EEEFS++IPD E I V DAIDYISKH Sbjct: 36 DSLDTVELVMAFEEEFSVEIPDDAAEKILTVQDAIDYISKH 76
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A6I4YQL6_9PROT (Acyl carrier protein n=4 Tax=Acetobacteraceae TaxID=433 RepID=A0A6I4YQL6_9PROT) HSP 1 Score: 56.6 bits (135), Expect = 1.950e-9 Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 Query: 1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHK 126 DSLD VELVMA EE FS++IP+ T E I+ VSDAIDYISK K Sbjct: 38 DSLDTVELVMAFEEAFSVEIPEDTAEKIATVSDAIDYISKQK 79
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: UPI00193BFBA4 (acyl carrier protein n=1 Tax=Clostridium sp. D2Q-11 TaxID=2683708 RepID=UPI00193BFBA4) HSP 1 Score: 56.2 bits (134), Expect = 2.400e-9 Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1 Query: 1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHK 126 DSLD+VEL+MAIEE+F I+IPD E ISIV DA+DYI+ +K Sbjct: 34 DSLDVVELIMAIEEDFEIEIPDEDAEKISIVKDAVDYINNNK 75
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A3E0NW23_9BACT (Acyl carrier protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3E0NW23_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 2.580e-9 Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 Query: 1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKH 123 DSLD+VELVMA EEEF I+IPD E IS VS+A+DYI+KH Sbjct: 35 DSLDIVELVMAFEEEFGIEIPDEDAEKISRVSEAVDYINKH 75
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: UPI001A01F844 (Acyl carrier protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A01F844) HSP 1 Score: 55.8 bits (133), Expect = 3.570e-9 Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 Query: 1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHKD 129 DSLD VELVMA+EEEF ++IPD E I V DA++YI+KHK+ Sbjct: 35 DSLDTVELVMALEEEFGVEIPDEDAEQIKTVQDAVNYINKHKE 77
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A520Y7Q2_9SPHN (Acyl carrier protein n=3 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A520Y7Q2_9SPHN) HSP 1 Score: 55.8 bits (133), Expect = 3.660e-9 Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 Query: 1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHK 126 DSLD+VELVMA EEEF ++IPD EDI+ V DAI+YI K+K Sbjct: 36 DSLDIVELVMAFEEEFGVEIPDDAAEDIATVKDAINYIEKNK 77
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: W9BZ69_9SPHN (Acyl carrier protein n=8 Tax=Sphingomonadales TaxID=204457 RepID=W9BZ69_9SPHN) HSP 1 Score: 55.8 bits (133), Expect = 3.660e-9 Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 Query: 1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHK 126 DSLD+VELVMA EEEF ++IPD E IS V+DAI+YI HK Sbjct: 36 DSLDIVELVMAFEEEFGVEIPDDAAEKISTVNDAIEYIDSHK 77
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A081C1H7_9BACT (Acyl carrier protein n=1 Tax=Candidatus Vecturithrix granuli TaxID=1499967 RepID=A0A081C1H7_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 4.950e-9 Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1 Query: 1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKH 123 DSLD VELVMA+EEEF IDIPD E+IS V+DAI YI H Sbjct: 35 DSLDTVELVMALEEEFGIDIPDEDAENISTVNDAISYIESH 75
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A3M1R4Q3_9BACT (Acyl carrier protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A3M1R4Q3_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 5.070e-9 Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 Query: 1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHKD 129 DSLD VELVMA+EEEF I+IPD E I+ V DAIDY+ +HK+ Sbjct: 33 DSLDTVELVMALEEEFGIEIPDEEAEKITTVQDAIDYVLEHKE 75 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100650.141.1 >prot_P-canaliculata_contig100650.141.1 ID=prot_P-canaliculata_contig100650.141.1|Name=mRNA_P-canaliculata_contig100650.141.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=40bp MVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHKD*back to top mRNA from alignment at P-canaliculata_contig100650:892..1023- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100650.141.1 ID=mRNA_P-canaliculata_contig100650.141.1|Name=mRNA_P-canaliculata_contig100650.141.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at P-canaliculata_contig100650:892..1023- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100650:892..1023- >mRNA_P-canaliculata_contig100650.141.1 ID=mRNA_P-canaliculata_contig100650.141.1|Name=mRNA_P-canaliculata_contig100650.141.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at P-canaliculata_contig100650:892..1023- (Pelvetia canaliculata dioecious)back to top |