mRNA_P-canaliculata_contig100535.118.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7S4IKG1_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IKG1_9EUKA) HSP 1 Score: 196 bits (499), Expect = 7.660e-58 Identity = 109/235 (46.38%), Postives = 134/235 (57.02%), Query Frame = 3 Query: 138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQCPPLASP--PPTEWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFSPRY----------PKTHKSFLQELEWAVDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPEL-----DGKAILVSGHHSMYYNLGDRYIIDASGG 791 GD CDRGPDT+GV+DWL++LRD R TT FLAGNHDFG A F+ P+ P PP + L+ T NP F ++ V G MHYQGRRWA YN+D+ F SYG+ F + P +HK FLQ + W + ++ GRV VHAG N PL Q+A L AR+ A L A +D R A R+ PMHPEL + + LVSGHH G R IIDASGG Sbjct: 51 GDYCDRGPDTRGVLDWLVQLRDGRAAGTTHFLAGNHDFGFAAFIGMLPIDKPHQPPLD-LETTKNPRFTSGYWPYPVVGGMHYQGRRWAEGYTYNSDSAFASYGVQFDGSFEMRDRLIKAVPHSHKDFLQRMLWVHEADRTW--GRVVCVHAGLNCESPLAPQLAALKARDLSASCLFAGSDSGRIAAMSERRSVEPMHPELTSLEGERPSWLVSGHHGFTSLEGKRLIIDASGG 282
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7S3PJB6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJB6_9STRA) HSP 1 Score: 192 bits (487), Expect = 3.660e-55 Identity = 104/233 (44.64%), Postives = 130/233 (55.79%), Query Frame = 3 Query: 138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTR----FLAGNHDFGMACFLQCPPLASPPPTEWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFSPR-----------YPKTHKSFLQELEWAVDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKAILVSGHHSMYYNLGDRYIIDASGG 791 GD CDRGP+TKGV+DWL++ +++R+ D T+ F+ GNHDFGMA FL P+ P + LDKT P + ++K V G MHYQGRRW GS Y A TF+SY + F P+ HK FL LEW VD P SF PGRV VHAG QI L R+ L+ + D R AF GR+ M EL GKA+L+SGHH DR ++D SGG Sbjct: 58 GDYCDRGPNTKGVLDWLVDFKNERLHDPTKGDVHFVCGNHDFGMASFLGSLPIDGKSPID-LDKTRKPDYTDGYWKHDVEGGMHYQGRRWGGSHIYQAQQTFESYHVKFDRHSRSARDELVAAVPEAHKDFLSSLEWVVDFPVSFEPGRVVCVHAGLEKKH-AEEQIEALAKRDLSKSILLENRDPGRFSAFSGRRNVLDMPRELKGKALLISGHHGFNRIKKDRIVLDLSGG 288
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7S2FJ62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJ62_9STRA) HSP 1 Score: 177 bits (449), Expect = 8.400e-50 Identity = 104/235 (44.26%), Postives = 132/235 (56.17%), Query Frame = 3 Query: 138 GDCCDRGPDTKGVIDWLIELRDQRVPDT----TRFLAGNHDFGMACFLQCPPL-ASPPPTEWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFSP-----------RYPKTHKSFLQELEWAVDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKAILVSGHH-SMYYNLGDRYIIDASGG 791 GD DRGPD++GVID+L+ LR R + T F+AGNHD GMA F+ P + E L+ T N ++ + F+ V G MHYQGRRW GST YN T F SYG + P HK FLQ L+ D P F PGR+ VHAG + P Q+ +L AR+ +P++ +D SR A H R PMH +L GKAI+VSGHH +M N GDR I+D SGG Sbjct: 96 GDYVDRGPDSRGVIDFLVGLRAARAVEDGTGGTYFIAGNHDLGMATFIGVPCCDEASVSAEALEATRNVAYKKGFFVHPVEGGMHYQGRRWGGSTVYNCHTCFSSYGAGDADYTAESRERLVKAVPDAHKEFLQGLDLCHDAPIPFGPGRLICVHAGLSPDVPAEEQLERLRARDILSPSIQHPDDASRIPALHSRGAVIPMHHDLVGKAIVVSGHHGTMDVNRGDRIIMDLSGG 330
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7S3ARZ9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ARZ9_9EUKA) HSP 1 Score: 161 bits (407), Expect = 2.150e-43 Identity = 101/260 (38.85%), Postives = 131/260 (50.38%), Query Frame = 3 Query: 138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQCPPLASPPPTEWLDKTLNPSFHRD------FYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFSPRY---------------------------PKTHKSFLQELEWAVDLPTSFPPGRVT---AVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSI------AFHGRQLARPMHPELDGKAILVSGHHSMYYNLGDRYIIDASGG 791 GD CDRGPDTKGVIDWLIELR + F+AGNHDFG A FL C P P P + LD T +P ++ D F+ VAG MHYQGRRWA Y + TF+SYG+ F P++H++FL +LEW + P + G ++ VHAG + ++PL Q+ L R+ P L A + + AF GR P HPE + VSGHH + G+R I+D SGG Sbjct: 104 GDYCDRGPDTKGVIDWLIELR-RTHSAPVHFIAGNHDFGFAAFLGCLP---PSPVD-LDATKSPKYNTDLDDPKGFWPHPVAGGMHYQGRRWAEGKVYPSVATFRSYGVDFEVEQIVKDGQVEHELFRRLPAAMRPQLLAAVPESHRTFLAQLEWLHEQPVTGWGGGISELICVHAGLDGSKPLAPQLRALRQRDLTDPILYAPPRLGEPVVLDRIEAFSGRTELFPSHPENADTCVQVSGHHGVSMESGNRIILDRSGG 358
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7S1AHB2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AHB2_NOCSC) HSP 1 Score: 157 bits (396), Expect = 1.250e-42 Identity = 98/240 (40.83%), Postives = 123/240 (51.25%), Query Frame = 3 Query: 138 GDCCDRGPDTKGVIDWLIELRDQRVPDT---TRFLAGNHDFGMACFLQCPPLASPPPT--------EWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFS----------PRYPKTHKSFLQELEWAVDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKAILVSGHHSMYYNLGD-RYIIDASGG 791 GD DRGPDTKGV+D+L+ L+ R T FLAGNHDF A ++ A PPP+ +L P + + V G MH+QGRRW Y+ TFKSYG+ F+ HK FL L + D P FPPGR+ AVHAG +T P QI LLA + L D R R+L MHP+L G+AILVSGHHSM + R+IID++GG Sbjct: 58 GDYNDRGPDTKGVLDFLVALKKWRAVHAQGETVFLAGNHDFAFAAYIG----ALPPPSVDDEVFEIAFLCGENEPYEEGELFSFEVEGGMHHQGRRWGAGDTYSNKATFKSYGVDFALTKECRQSLIDAVAPEHKEFLNSLVYCYDTPVPFPPGRLVAVHAGLDTRHPAEPQIQALLALDLYGETLTPFGDGRRITPISERELVWHMHPDLMGRAILVSGHHSMRATPSEHRHIIDSTGG 293
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A5J9TTE9_9POAL (Metallophos domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TTE9_9POAL) HSP 1 Score: 118 bits (295), Expect = 6.370e-28 Identity = 84/249 (33.73%), Postives = 117/249 (46.99%), Query Frame = 3 Query: 138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACF---LQCPPLASPPPTEWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTK---------------YNADTTFKSYGLS-----FSPRYPKTHKSFLQELEWAVD---LPTSFPPG----RVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGK-AILVSGHHSMYYNLGDRYIIDASGG 791 GD CDRGP T+GV+D+L+ L + FL GNHDF A F L PP SP W D+ L+ H +++ MH QGRRW G+ Y+A TF+SYG++ + P+ HK FL +L W + +P G ++ AVHAG + L Q+ L R D+ + + HGRQ + +L GK ++VSGHH + G R+IID GG Sbjct: 50 GDYCDRGPSTRGVLDFLLALPARYPSQRHVFLCGNHDFAFAAFVGALPPPPDGSPFSVTW-DEYLHNEEHEGWFRGPGHEGMHVQGRRWGGAINEGWNPKKGLPYKGSIYDAQPTFESYGVAHGSPDLAKAVPEDHKRFLHDLVWIHEEENVPIDTDEGQTVCKLIAVHAGLGRSTDLNEQLRVLRTR---------DSRVPKVQMLHGRQDVWDIPKDLSGKQTVIVSGHHGKLHIDGLRFIIDEGGG 288
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A1U7Z9Y6_NELNU (uncharacterized protein LOC104587886 isoform X1 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7Z9Y6_NELNU) HSP 1 Score: 113 bits (282), Expect = 4.360e-26 Identity = 85/244 (34.84%), Postives = 111/244 (45.49%), Query Frame = 3 Query: 108 SFRIGGCRLFGDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQCPPLASPPPTEWLDKTLNPSFHRD----FYKPTVAGAMHYQGRRWAGSTKYNADTTFKSYGLSFSPR-----YPKTHKSFLQELEWAV---DLPTSFPPGR----VTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKAILVSGHHSMYYNLGDRYIIDASGG 791 SF+ GD CD+GPDT+ VID+LI L + T FL+GNHD G A F+ L PP +T S +YK MH QGR W G NA +TF+SYG+ + P+ HK FL +L W D+ GR + AVHAG T+ + Q+ L AR+ P ++A S + + P +LVSGHH G R IID SGG Sbjct: 47 SFQTALIIFLGDYCDKGPDTRSVIDFLISLPSRYPKQTHVFLSGNHDLGFAAFIGV--LPPPPDGSTFAETWKGSEQYGEKVGWYKGAGYENMHLQGRLWGGPVDSNAASTFQSYGIPYGSTDLVKAVPEEHKKFLADLVWVHEEDDVCIETSEGRKHYKLIAVHAGLEKTKGVQEQLKLLRARDTSQPMIVALTGRSNVLDIPQELVDCPT------PTMLVSGHHGKLELNGLRLIIDESGG 282
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: M4ELY9_BRARP (Metallophos domain-containing protein n=7 Tax=Brassica TaxID=3705 RepID=M4ELY9_BRARP) HSP 1 Score: 112 bits (281), Expect = 6.820e-26 Identity = 88/250 (35.20%), Postives = 113/250 (45.20%), Query Frame = 3 Query: 138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQCPPL---ASPPPTEWLDKTLNPSFHRD-FYKPTVAGAMHYQGRRWAGSTK---------------YNADTTFKSYGL-----SFSPRYPKTHKSFLQELEWA-------VDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGK-AILVSGHHSMYYNLGDRYIIDASGG 791 GD CDRGP+T+ VID+LI L ++ T FLAGNHDF A FL P S W + S R+ +YK MH QGRRWAG K Y+A TTF+SYG+ P++HK FL + W V+ ++ AVHAG + Q+ L A+ D IS+ GR+ + ELD K +LVSGHH + G R IID GG Sbjct: 46 GDYCDRGPETRKVIDFLISLPEKHPEQTHVFLAGNHDFAFAAFLGLLPRPWDGSELKETW--REYEESEEREGWYKGEGFEEMHLQGRRWAGKIKAQFNSVKGMAYKGSIYDAGTTFESYGVPHGSSDLMKAVPESHKKFLTNMVWVHEEDDVCVETEEGVKRCKLIAVHAGLEKGDSVEEQLKLLRAK---------DTSISKVPYLSGRRNVWDIPQELDDKETVLVSGHHGKLHMDGLRLIIDEGGG 284
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A7I8L6H4_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L6H4_SPIIN) HSP 1 Score: 112 bits (281), Expect = 8.050e-26 Identity = 88/279 (31.54%), Postives = 123/279 (44.09%), Query Frame = 3 Query: 72 LVMAYSGKQIR---RSFRIGGCRLFGDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQCPPLASPPPTE-------WLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTK---------------YNADTTFKSYG-----LSFSPRYPKTHKSFLQELEWAV---DLPTSFPPGRVT----AVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKA--ILVSGHHSMYYNLGDRYIIDASGG 791 L+ ++ ++R +FR GD CDRGP T+ VID+L+ L + FL GNHD + F+ A PPP + W + N ++K MH QGRRW G + Y+A TF+SYG + + P+ HK FL L W D+ P GR+ AVHAG +P+ Q+ L +R D IS+ A GRQ + EL G+ I+VSGHH + G R+I+D GG Sbjct: 33 LLRLWANLELRVGGAAFRTALVIFLGDYCDRGPQTREVIDFLLSLPSRYPEQRHVFLCGNHDLAFSAFVG----ALPPPHDGSTFSETWAEYEANEE-REGWFKGEGYEGMHLQGRRWGGVIRDRWNSKRGTEYLGSIYDAGPTFQSYGVPHGSIELTKAVPEEHKKFLSTLVWIHEEDDVGLDAPEGRLCCKLIAVHAGLERGKPVEQQLRTLRSR---------DTSISKVEALSGRQNVWNIPKELSGETPTIIVSGHHGKLHLEGLRFIVDEGGG 297
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Match: A0A087H884_ARAAL (Metallophos domain-containing protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087H884_ARAAL) HSP 1 Score: 112 bits (279), Expect = 1.330e-25 Identity = 84/248 (33.87%), Postives = 114/248 (45.97%), Query Frame = 3 Query: 138 GDCCDRGPDTKGVIDWLIELRDQRVPDTTRFLAGNHDFGMACFLQC--PPLASPPPTEWLDKTLNPSFHRDFYKPTVAGAMHYQGRRWAGSTK---------------YNADTTFKSYGLSFSPR-----YPKTHKSFLQELEWA-------VDLPTSFPPGRVTAVHAGFNTTQPLTLQIAQLLARNFDAPALIADNDISRSIAFHGRQLARPMHPELDGKAI-LVSGHHSMYYNLGDRYIIDASGG 791 GD CDRGP+TK VID+LI L ++ T FLAGNHDF A FL PL + ++ +YK MH QGRRWAG+ K Y+A +TF+SYG+ P++HK FL ++ W ++ ++ AVHAG + + Q+ L + D IS+ GR+ + ELD K I +VSGHH + G R IID SGG Sbjct: 46 GDYCDRGPETKKVIDFLISLPEKHPDQTHVFLAGNHDFAFAGFLGLLPRPLDGSDMKDTWNEFEKSEEREGWYKGEGFEDMHLQGRRWAGTIKAQFDSKIGVVYNGSIYDAGSTFESYGVPHGSSDLMKVVPESHKKFLTDMVWVHEEEDVCIETEKGLKQCKLIAVHAGLEKGKSVNEQLELLRGK---------DTSISKIQPLSGRKNVWNIPQELDDKQIVIVSGHHGKLHIDGLRLIIDESGG 284 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100535.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100535.118.1 >prot_P-canaliculata_contig100535.118.1 ID=prot_P-canaliculata_contig100535.118.1|Name=mRNA_P-canaliculata_contig100535.118.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=238bp MAYSGKQIRRSFRIGGCRLFGDCCDRGPDTKGVIDWLIELRDQRVPDTTRback to top mRNA from alignment at P-canaliculata_contig100535:50..877- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100535.118.1 ID=mRNA_P-canaliculata_contig100535.118.1|Name=mRNA_P-canaliculata_contig100535.118.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at P-canaliculata_contig100535:50..877- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100535:50..877- >mRNA_P-canaliculata_contig100535.118.1 ID=mRNA_P-canaliculata_contig100535.118.1|Name=mRNA_P-canaliculata_contig100535.118.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at P-canaliculata_contig100535:50..877- (Pelvetia canaliculata dioecious)back to top |