mRNA_P-canaliculata_contig100532.116.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI0003F97F06 (methyl-accepting chemotaxis protein n=1 Tax=Psychromonas sp. SP041 TaxID=1365007 RepID=UPI0003F97F06) HSP 1 Score: 381 bits (979), Expect = 5.950e-129 Identity = 216/307 (70.36%), Postives = 251/307 (81.76%), Query Frame = 1 Query: 1 MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSNLIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921 M+QL + PIQ IIH+VGF+ M+ Y V+++II T + F I H LS EL LLY+S+AL++I N E+ F Q++ SLNA+TFDYRELK + L+ A LEQL SSYRELGRVNDKNKDKLSEVSYSAIQVI+TAHSV ENVQKQS+ATNA AAAITEMS S +EV RI VH++SE+AFNTAE+GR SIA LK L+KVAFEA+ T DIE LMTLA+ VA+ISESIQGIADQTNLLALNASIEAARAGE+GRGFAVVADEVR LSHRSH AAD+IVKNV+ VINQG+KI +SMSNVVEQS Sbjct: 1 MHQLFSLPIQKIIHFVGFKAMLSFYLCVLLTIIATQMTIVNFPEKISTHALSIELAILLYLSVALVMIINTELQSFKQIICSLNADTFDYRELKISNLLPASLLEQLTSSYRELGRVNDKNKDKLSEVSYSAIQVINTAHSVTENVQKQSDATNATAAAITEMSVSLNEVNTRISGVHHSSEHAFNTAEQGRISIAELKISLEKVAFEADTTTNDIELLMTLAHSVAEISESIQGIADQTNLLALNASIEAARAGEFGRGFAVVADEVRALSHRSHKAADSIVKNVSSVINQGNKISHSMSNVVEQS 307
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI001357BB7C (methyl-accepting chemotaxis protein n=1 Tax=Psychromonas sp. L1A2 TaxID=2686356 RepID=UPI001357BB7C) HSP 1 Score: 370 bits (949), Expect = 2.110e-124 Identity = 208/307 (67.75%), Postives = 246/307 (80.13%), Query Frame = 1 Query: 1 MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSNLIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921 M QL + P+Q +I +VGF+ ++ Y ++++I+ T F +P H+LS EL L Y S+AL+++ N E++ F +MLSSLNA+TFDYR+LK N L+ + LEQL SSYRELGRVNDKNKDKLSEVSYSAIQVI+TAHSV ENVQKQS+ATNA AAAITEMS S +EV RI VH++SE AFNTAE+GR SIA L+ L+KVAFEA TA DIE LMTLAN VA+ISESIQGIADQTNLLALNASIEAARAGE+G GFAVVADEVR LSHRS+ AAD+IVKNV VINQG+KI SMSNVVEQS Sbjct: 1 MRQLFSLPVQKVIQFVGFKVVVSFYICMLLTILATQFSVVNFPGKVPTHLLSIELAVLFYFSVALIMVINDELHSFKRMLSSLNADTFDYRDLKTNNLLPENLLEQLTSSYRELGRVNDKNKDKLSEVSYSAIQVINTAHSVTENVQKQSDATNATAAAITEMSVSLNEVNTRISGVHSSSENAFNTAEQGRLSIAELQASLEKVAFEAGTTANDIELLMTLANTVAEISESIQGIADQTNLLALNASIEAARAGEFGLGFAVVADEVRALSHRSYTAADSIVKNVRSVINQGNKISLSMSNVVEQS 307
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: A0A4Y7ZGY2_9GAMM (Chemotaxis protein n=2 Tax=Psychromonas sp. RZ5 TaxID=2555642 RepID=A0A4Y7ZGY2_9GAMM) HSP 1 Score: 359 bits (922), Expect = 4.880e-120 Identity = 200/307 (65.15%), Postives = 246/307 (80.13%), Query Frame = 1 Query: 1 MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSNLIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921 M +IA PIQ II+Y GFR M+ +Y +I+ II T+ + YF +P L EL LLY+S++L+++ E+ LFNQM +S+NA+TFDYR LK + L++A L++LMSSYRELGRVNDKNKD+L+EV+YSAIQVIDTA +V NV+KQS+ATN+ AAAI EMS S +EV RI DVH++SE+A+ TAEKGR SIA LK+ LD VAFEA++T+ DIE LMTLAN VA+ISESIQGIA QTNLLALNASIEAARAGEYGRGFAVVADEVR L+ RSH AAD+IVKNV LVI+QG+KI SM+ VV QS Sbjct: 21 MNNIIAYPIQNIINYAGFRAMLSIYITLILLIIATYFVTLYFPGTLPSQALPIELFLLLYLSMSLIVVFKNELKLFNQMFTSVNADTFDYRHLKTSNLIAAAALDELMSSYRELGRVNDKNKDRLNEVAYSAIQVIDTARAVTVNVEKQSDATNSTAAAINEMSTSLTEVNSRIGDVHHSSEHAYVTAEKGRVSIAELKSSLDHVAFEAHETSSDIEQLMTLANAVAEISESIQGIAAQTNLLALNASIEAARAGEYGRGFAVVADEVRALATRSHTAADSIVKNVGLVIDQGNKISTSMAKVVTQS 327
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: A0A7W4FHC9_9GAMM (Chemotaxis protein n=2 Tax=Psychromonas TaxID=67572 RepID=A0A7W4FHC9_9GAMM) HSP 1 Score: 357 bits (915), Expect = 2.910e-119 Identity = 200/307 (65.15%), Postives = 243/307 (79.15%), Query Frame = 1 Query: 1 MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSNLIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921 MYQL + P+Q IIH+ GF+ M+ +Y G++ +II T I++ F I HVLS EL L Y+SIAL++ N E++ F QM LNA++FDYR+L+ + L++AHF++QL++SYRELGRVNDK KD+L+EVSYSAIQVIDTAH+VAENVQKQSNATN+ AAAITEMS S SEV I +VH +S++AF+TAEKGR SI LK L V FEANQTA DI+ LMTLAN VA+IS+SIQGI DQTNLLALNASIEAARAGE GRGFAVVADEVR L+ RS AAD+IVKNV+LV NQ KI SM+ VV QS Sbjct: 1 MYQLFSIPVQKIIHFAGFKAMLSIYMGLLSAIIATQIVSVNFPEQISVHVLSIELAILFYLSIALVMAINNELHSFKQMFRLLNADSFDYRDLQTSHLITAHFIDQLLASYRELGRVNDKYKDRLNEVSYSAIQVIDTAHAVAENVQKQSNATNSTAAAITEMSASLSEVNGGIREVHLSSQHAFDTAEKGRASIVDLKLSLKSVVFEANQTAGDIDVLMTLANSVAEISQSIQGITDQTNLLALNASIEAARAGELGRGFAVVADEVRALALRSRIAADDIVKNVDLVKNQSHKISTSMAKVVTQS 307
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI001C08554C (methyl-accepting chemotaxis protein n=1 Tax=Psychrosphaera sp. F3M07 TaxID=2841560 RepID=UPI001C08554C) HSP 1 Score: 253 bits (645), Expect = 1.510e-78 Identity = 156/306 (50.98%), Postives = 209/306 (68.30%), Query Frame = 1 Query: 22 PIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSN------LIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921 P + +I ++GF Y ++ ++ F+N LIP + LIT Y+ ++L++I +KE++ F +L + +AE+FDYR+L L+ +EQ M+SYREL RVN+++ DKLSEV YSA QVID A +V+ NVQKQS+AT++ AAAI EMSHS EV RI DVH +S++A A+ GR +I LK+ LD V EA +T +DI+ L LA V+ SESIQGIADQTNLLALNASIEAARAGE GRGFAVVA+EVR L+HR+ AAD+I NVN V++Q KI +MSNVV+Q+ Sbjct: 8 PARQLIKFIGFNA----YISSLLLLVFAFFPISLFTNINIHQTLIPLY----ALITF-YLCLSLVLILSKELSNFKGLLINFDAESFDYRKLTIQTLLPVDAIEQFMNSYRELSRVNNQHHDKLSEVDYSASQVIDKAQAVSVNVQKQSDATSSTAAAINEMSHSLIEVNDRISDVHVSSKHANQAAQSGRNTILDLKSSLDVVLTEAKETQQDIQRLEQLATIVSSTSESIQGIADQTNLLALNASIEAARAGEMGRGFAVVAEEVRALAHRARDAADSIGNNVNTVLSQSKKIAQNMSNVVQQT 304
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: A0A2D6RJ66_9GAMM (Chemotaxis protein n=1 Tax=Colwelliaceae bacterium TaxID=2026726 RepID=A0A2D6RJ66_9GAMM) HSP 1 Score: 237 bits (605), Expect = 1.820e-72 Identity = 133/248 (53.63%), Postives = 181/248 (72.98%), Query Frame = 1 Query: 178 YISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921 YI+ ++ ++++N F+Q + +++ + FD R +K ++ + + +L+++YRELGR+N +N+D+L EV YSA QVIDTAHSV ENV+KQS+AT + AAAI EMS S S+V RI DVH +S+ A+ TA++G+E++ SL LD V+ EA QT DI+ L LA V SESIQ IADQTNLLALNASIEAARAGE GRGFAVVA+EVR L+H S +AD+IV NV V+ Q + I SMS VVE++ Sbjct: 59 YITTGTGVVLSQQLNKFSQTIHNIDTQHFDSRAVKFEPILPSTAISELLNTYRELGRINSENEDRLEEVKYSASQVIDTAHSVTENVKKQSDATTSTAAAIVEMSQSLSDVNARIKDVHISSQTAYQTAKQGQENLTSLNQNLDAVSKEAKQTQGDIDALKQLAIVVESTSESIQNIADQTNLLALNASIEAARAGEMGRGFAVVAEEVRALAHHSRESADSIVSNVKSVLLQSEAIALSMSKVVEKA 306
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI00129E9252 (methyl-accepting chemotaxis protein n=2 Tax=unclassified Shewanella TaxID=196818 RepID=UPI00129E9252) HSP 1 Score: 195 bits (495), Expect = 3.990e-56 Identity = 117/302 (38.74%), Postives = 190/302 (62.91%), Query Frame = 1 Query: 22 PIQTIIHYVGFRTMIGVYAGVIISIIITHILNGY--FSNLIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921 P+ I++ +GF+ S I+T ++ + F++ I H++ LY+ I + + N+++ ++S +N FD+R++ + + + + L+ +YREL RVN ++ + EV YSA+QVI+T+ V +NVQ QS+ATNA AAAIT+MS S +EV I + H +S +A A +G+ ++ SL + V+ +A++T + + +L L +V I+ESI I+ QTNLLALNASIEAARAGE+GRGFAVVA+EVR L+ R+ + ++IV N+N V+ + +I +M+ VVEQ+ Sbjct: 7 PVNLIVNALGFKG----------SCILTILIYSFVVFTSTISHHIVFISHAIFLYLFIGFLYVINEQLEQIKAVVSDINTHQFDHRDIHFSNQIQSPLTDTLLKTYRELSRVNIHHQQRNQEVEYSAVQVIETSAKVKDNVQSQSDATNATAAAITQMSQSLAEVNNEISNTHKSSCHAAEIALQGQNALKSLHEAVADVSEKADKTQQRMVSLNKLVTNVESITESIAHISQQTNLLALNASIEAARAGEFGRGFAVVAEEVRALAERTQCSTEHIVTNINEVLKESGEIVITMAGVVEQA 298
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: A0A2S7UYW8_9GAMM (Methyl-accepting transducer domain-containing protein n=2 Tax=Psychrosphaera saromensis TaxID=716813 RepID=A0A2S7UYW8_9GAMM) HSP 1 Score: 183 bits (464), Expect = 1.060e-52 Identity = 110/200 (55.00%), Postives = 136/200 (68.00%), Query Frame = 1 Query: 322 MSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921 M++YREL RVN+K+ +KL EV YSA QVI+ AH+V+ NVQKQS+AT + AAAI +MS SF EV RI DVH +S+ A A+ GR +I L++ L+ V E SESIQ IADQTNLLALNASIEAARAGE GRGFAVVA+EVR L+H S AAD+I N+N + Q KI +M+NVVEQ+ Sbjct: 1 MNTYRELNRVNNKHHEKLHEVDYSASQVIEKAHAVSVNVQKQSDATTSTAAAINQMSQSFVEVNNRIADVHTSSKNANQDAKNGRSTITDLRSSLNIVLNEXXXXXXXXXXXXXXXXXXXTSSESIQAIADQTNLLALNASIEAARAGETGRGFAVVAEEVRALAHSSREAADSISSNINAALTQSHKIAENMANVVEQT 200
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI001C099CD3 (methyl-accepting chemotaxis protein n=1 Tax=unclassified Psychrosphaera TaxID=2641570 RepID=UPI001C099CD3) HSP 1 Score: 175 bits (443), Expect = 2.460e-48 Identity = 130/311 (41.80%), Postives = 190/311 (61.09%), Query Frame = 1 Query: 1 MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIIT-HILNGYFSNLIPFHVLSFELITLL--YISIALMIICNKEVNLFNQMLSSLNAETFDYRELKA----NRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVV 912 M +I P+ ++ +G R V A +SI +T ++LN + N++ ++ ++ LL Y+ + + + L ++ E FD R +K+ N ++A F+E L REL R N++N +L EV+YSA QVI TA+SV+ENVQ+QS+AT + A+AI EM+HS EV+ +I+ VH+A+ A +TA ++ + +L L V EA T +E L +A V + S +IQ IA QTNLLALNASIEAARAG++G GFAVVA+EVR L+ RSH AAD+IV+ V V NQ +I SM+ VV Sbjct: 1 MGNIIFYPVSLLLKSIGIRNCF-VLAITSLSIYLTLNMLNIF--NVLSIGIVQINILCLLSSYLLFGTLYVTYHYLKTSLSFLDEIDIEQFDPRNIKSLASQNHPLAAKFVEVL----RELSRSNEQNTARLREVAYSAQQVIGTANSVSENVQRQSDATTSTASAIIEMTHSLQEVSNKIELVHSAACGASSTASLAKKELINLTEKLHNVTIEAQDTQTRMEKLNVMATSVEKESHAIQKIAQQTNLLALNASIEAARAGQFGVGFAVVAEEVRELATRSHLAADSIVRAVLEVSNQTKQILDSMTTVV 304
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI001FFC80A9 (methyl-accepting chemotaxis protein n=2 Tax=Pseudoalteromonas sp. MMG010 TaxID=2822685 RepID=UPI001FFC80A9) HSP 1 Score: 172 bits (437), Expect = 2.720e-48 Identity = 102/225 (45.33%), Postives = 147/225 (65.33%), Query Frame = 1 Query: 247 LNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921 +N + FD+RE+ + L+ + L +L+ +YRELGRVN +++ EV YSA QVID A V NV QS+ATN+ A+AIT+MS S +V I H++S A N A +G+ ++ L +++ +A T + L TL V +++++IQ I+ QTNLLALNASIEAARAGE+GRGFAVVA EVR L+ R+H A +NIV ++ V+N+ I +M VV Q+ Sbjct: 3 INTDDFDHREIYFDLLLGSDVLNELLKTYRELGRVNKHHQENNKEVEYSANQVIDIATEVKNNVLLQSDATNSTASAITQMSQSLFDVNKEISLTHDSSLLASNKAHEGKAALVLLTQAINEANKQAQHTQNGMNVLNTLITDVEKMTDTIQQISQQTNLLALNASIEAARAGEHGRGFAVVAQEVRELAERTHNATENIVGTISQVLNKNTDIVTAMDIVVIQT 227 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100532.116.1 >prot_P-canaliculata_contig100532.116.1 ID=prot_P-canaliculata_contig100532.116.1|Name=mRNA_P-canaliculata_contig100532.116.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=307bp MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSNLIPFHVback to top mRNA from alignment at P-canaliculata_contig100532:1..921- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100532.116.1 ID=mRNA_P-canaliculata_contig100532.116.1|Name=mRNA_P-canaliculata_contig100532.116.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=921bp|location=Sequence derived from alignment at P-canaliculata_contig100532:1..921- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100532:1..921- >mRNA_P-canaliculata_contig100532.116.1 ID=mRNA_P-canaliculata_contig100532.116.1|Name=mRNA_P-canaliculata_contig100532.116.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1842bp|location=Sequence derived from alignment at P-canaliculata_contig100532:1..921- (Pelvetia canaliculata dioecious)back to top |