mRNA_P-canaliculata_contig10053.115.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Match: D8LLH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH0_ECTSI) HSP 1 Score: 382 bits (982), Expect = 2.370e-131 Identity = 187/227 (82.38%), Postives = 209/227 (92.07%), Query Frame = 1 Query: 1 RRDVVRAMFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAKTVLDGATEGCSIAVNGVCLTVTSFSREEFKVGLAPETLRRSNLGDLEKGDGVNLERALPVDGRNSGHFVQGHVDDVGTILNMEMDKDSLVVKVRAPRDLMRFIVPKGFISVDGTSLTVCEVNYEECWFSFMLVAYTQRNVIIPSKSEGDTVNLEVDVLGKYVERSLSSVLDRLSALEGWKK 681 RR+VVRAMFSGIVEE GSV+SLVKND VKLWDG+ G GVELTVKA TVL+GATEGCSIAVNGVCLTVTSF+ +EFKVGLAPETLRRSNL DL GDGVNLERALPVDGRNSGHFVQGHVD+VGTIL+ME D+DSLVVKV P+DL+R+I PKGFI+VDGTSLTVCEVN +ECWF+FMLVAYTQ++V+IP KS+GD VNLEVDVLGKY+ERSLSSVLDRL ALE W++ Sbjct: 59 RREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDDEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPKKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALEDWRE 285
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Match: A0A835Z1K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K1_9STRA) HSP 1 Score: 360 bits (925), Expect = 6.760e-122 Identity = 184/282 (65.25%), Postives = 219/282 (77.66%), Query Frame = 1 Query: 1 RRDVVRAMFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAKTVLDGATEGCSIAVNGVCLTVTSFSREEFKVGLAPETLRRSNLGDLEKGDGVNLERALPVDGRNSGHFVQGHVDDVGTILNMEMDKDSLVVKVRAPRDLMRFIVPKGFISVDGTSLTVCEVNYEECWFSFMLVAYTQRNVIIPSKSEGDTVNLEVDVLGKYVERSLSSVLDRLSALEGWKKATELKLASMEGLRA---------SDIDFKIGNVEHKVMNRDLILDTVEGRLARLE 819 RR V+RAMFSGIVEE G+V SL +N A+KLWDG++GEGVELT+ AK L+GA+ GCSIAVNGVCLTVT F E+F+VGLAPETLRRSNL DL GD VNLERAL GRNSGHFVQGHVDDVGTI + DSL V+V APR+LMR+IVPKGFI++DGTSLTVCEVN E WF+FMLVAYTQ ++++P K+ GD VN+EVDVLGKYVERSL+SVLDRL ALE A A EG RA +++++G VEHKV +RDL++D+VE RL +E Sbjct: 58 RRAVIRAMFSGIVEEKGTVKSLERNSAIKLWDGSVGEGVELTIAAKVALEGASLGCSIAVNGVCLTVTDFDEEQFRVGLAPETLRRSNLRDLAAGDAVNLERALASGGRNSGHFVQGHVDDVGTIAAFTPEGDSLWVRVSAPRELMRYIVPKGFIAIDGTSLTVCEVNAAEAWFTFMLVAYTQAHIVLPGKAVGDKVNIEVDVLGKYVERSLASVLDRLDALETAAAAAAPPKA--EGARAXXXXXPAAEGSVEYRLGAVEHKVTSRDLVIDSVEARLRTIE 337
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Match: A0A7S3AZ04_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZ04_9EUKA) HSP 1 Score: 298 bits (763), Expect = 8.130e-99 Identity = 150/218 (68.81%), Postives = 172/218 (78.90%), Query Frame = 1 Query: 16 RAMFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAKTVLDGATEGCSIAVNGVCLTVTSFSREEFKVGLAPETLRRSNLGDLEKGDGVNLERALPVDGRNSGHFVQGHVDDVGTILNMEMDKDSLVVKVRAPRDLMRFIVPKGFISVDGTSLTVCEVNYEECWFSFMLVAYTQRNVIIPSKSEGDTVNLEVDVLGKYVERSLSSVLDRLSALE 669 RAMFSGIVEE G++ L K D + LWDG++GEG E+ V+A VL A+ GCSIAVNGVCLTVT F F VGLAPET+RRSNL L+ GD VNLERALP DGRNSGHFVQGHVDDVG + + D DSL VKVR P L+ +IVPKGFI+VDGTSLTVCEVNY E WF+FMLVAYTQ+ +IIP K GD VNLEVDV+ KYVE+S++SVL RL ALE Sbjct: 16 RAMFSGIVEEMGTIRRLEKVDGLTLWDGSVGEGWEMEVEASEVLGQASLGCSIAVNGVCLTVTEFDEGSFSVGLAPETIRRSNLVKLKTGDPVNLERALPADGRNSGHFVQGHVDDVGILEELLPDGDSLFVKVRPPARLLPYIVPKGFIAVDGTSLTVCEVNYTEGWFNFMLVAYTQQKIIIPKKKVGDPVNLEVDVISKYVEKSMASVLARLDALE 233
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Match: A0A6V1VK25_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VK25_HETAK) HSP 1 Score: 291 bits (745), Expect = 1.210e-95 Identity = 150/221 (67.87%), Postives = 173/221 (78.28%), Query Frame = 1 Query: 10 VVRAMFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAK-TVLDGATEGCSIAVNGVCLTVTSFSREEFKVGLAPETLRRSNLGDLEKGDGVNLERALPVDGRNSGHFVQGHVDDVGTILNMEMDKDSLVVKVRAPRDLMRFIVPKGFISVDGTSLTVCEVNYEECWFSFMLVAYTQRNVIIPSKSEGDTVNLEVDVLGKYVERSLSSVLDRLSALE 669 V R MFSGIVEE G V SL + +K+WDG+ G G EL +++ TVLDGA +G SIAVNGVCLTV F + F+VGLAPETLRRSNL LE G VNLERAL D RNSGHFVQGHVD+ GTIL + + DSL VKV R+LMR+IVPKGFI++DGTSLTVCE N E WF+FMLVAYTQ+++IIPSKS GD VN+EVDVLGK VERSL +VLDRL ALE Sbjct: 41 VPRMMFSGIVEEMGIVRSLEEKTDMKMWDGSTGSGTELCIESDGTVLDGAYDGASIAVNGVCLTVIEFDDKSFRVGLAPETLRRSNLPLLEAGQRVNLERALAADARNSGHFVQGHVDETGTILELRPEGDSLWVKVGVSRELMRYIVPKGFIAIDGTSLTVCETNVAEGWFNFMLVAYTQKHIIIPSKSLGDKVNVEVDVLGKLVERSLGNVLDRLDALE 261
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Match: A0A8J6CDG9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDG9_DIALT) HSP 1 Score: 290 bits (743), Expect = 3.390e-95 Identity = 147/222 (66.22%), Postives = 175/222 (78.83%), Query Frame = 1 Query: 16 RAMFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAKTVLDGATEGCSIAVNGVCLTVTSFSREE--FKVGLAPETLRRSNLGD--LEKGDGVNLERALPVDGRNSGHFVQGHVDDVGTILNMEMDKDSLVVKVRAPRDLMRFIVPKGFISVDGTSLTVCEVNYEECWFSFMLVAYTQRNVIIPSKSEGDTVNLEVDVLGKYVERSLSSVLDRLSALE 669 RAMFSGIVEE G V SL + +KLWDG +G G EL V+ TVLDGAT+GCSIAVNGVCLTV F F+VGLAPETLRR+NL L+ GD VNLERALP DGRNSGHFVQGHVD VG ++++ D DSL V V+APR LM++IVPKGFI+VDGTSLTVC+V+Y FSFML+ YTQ++V+IP KS G TVNLE DV+GKYVERSL+ + +R++ALE Sbjct: 48 RAMFSGIVEEMGRVESLAERTDMKLWDGTIGSGWELAVRGSTVLDGATQGCSIAVNGVCLTVVDFDAGSGVFRVGLAPETLRRTNLNPAALKAGDAVNLERALPADGRNSGHFVQGHVDAVGELVSLTPDGDSLWVVVKAPRSLMKYIVPKGFIAVDGTSLTVCDVDYAASTFSFMLIGYTQQHVVIPQKSAGLTVNLEADVIGKYVERSLAGLSERVAALE 269
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Match: A0A0M0JSD6_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JSD6_9EUKA) HSP 1 Score: 286 bits (733), Expect = 1.580e-94 Identity = 143/216 (66.20%), Postives = 166/216 (76.85%), Query Frame = 1 Query: 22 MFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAKTVLDGATEGCSIAVNGVCLTVTSFSREEFKVGLAPETLRRSNLGDLEKGDGVNLERALPVDGRNSGHFVQGHVDDVGTILNMEMDKDSLVVKVRAPRDLMRFIVPKGFISVDGTSLTVCEVNYEECWFSFMLVAYTQRNVIIPSKSEGDTVNLEVDVLGKYVERSLSSVLDRLSALE 669 MFSGIVEE G VS L K +K WDG +GEG EL V+A L+GA+ GCSIAVNGVCLTVT F + +FKVGLAPET+RR+NL L GD VN+ERALP DGRNSGHFVQGHVDD+G I + D DSL V+VR P LM +IVPKGFI++DGTSLTVC VN E WF FML+A+TQ+ V+IP K+ GD VNLEVDVL KYVE+ L +V RL ALE Sbjct: 1 MFSGIVEEMGKVSKLDKVPRLKQWDGTVGEGWELEVEATVALEGASLGCSIAVNGVCLTVTEFDKHKFKVGLAPETIRRTNLERLVPGDPVNVERALPADGRNSGHFVQGHVDDIGIIEELRPDGDSLWVRVRPPARLMPYIVPKGFIAIDGTSLTVCNVNAAEGWFDFMLIAFTQQKVVIPKKAVGDAVNLEVDVLAKYVEQGLKAVTARLDALE 216
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Match: A0A7S4ETQ6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETQ6_CHRCT) HSP 1 Score: 286 bits (732), Expect = 1.630e-93 Identity = 144/230 (62.61%), Postives = 171/230 (74.35%), Query Frame = 1 Query: 16 RAMFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAKTVLDGATEGCSIAVNGVCLTVTSFSREEFKVGLAPETLRRSNLGDLEKGDGVNLERALPVDGRNSGHFVQGHVDDVGTILNMEMDKDSLVVKVRAPRDLMRFIVPKGFISVDGTSLTVCEVNYEECWFSFMLVAYTQRNVIIPSKSEGDTVNLEVDVLGKYVERSLSSVLDRLSALEGWKKATELKLAS 705 +A+FSGIVEE G V L +KLWDG++GEG EL V A+TVLDGA GCSIAVNGVCLTVT F + F GL+PETLRR+NL +L G VNLERAL DGRNSGHFVQGHVDDVG I M D ++L ++V+AP LM +IVPKGFI++DGTSLTVC N + WF FMLVAYTQ +I+PSK GD VNLEVDV KYVERS+ ++L+R+ ALE KA E A+ Sbjct: 45 QAVFSGIVEEIGEVKRLELKKGLKLWDGSVGEGWELQVGAQTVLDGAYLGCSIAVNGVCLTVTEFDGDSFTAGLSPETLRRTNLQELPSGAPVNLERALAADGRNSGHFVQGHVDDVGVIEEMRPDGEALWIRVKAPPRLMPYIVPKGFIAIDGTSLTVCNTNVADSWFDFMLVAYTQSKIILPSKQVGDAVNLEVDVTAKYVERSMGAMLERIEALERRLKAQERACAN 274
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Match: A0A7S3SZI5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SZI5_9SPIT) HSP 1 Score: 279 bits (713), Expect = 2.260e-91 Identity = 142/233 (60.94%), Postives = 173/233 (74.25%), Query Frame = 1 Query: 16 RAMFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAKTVLDGATEGCSIAVNGVCLTVTSFSREEFKVGLAPETLRRSNLGDLEKGDGVNLERALPVDGRNSGHFVQGHVDDVGTILNMEMDKDSLVVKVRAPRDLMRFIVPKGFISVDGTSLTVCEVNYEECWFSFMLVAYTQRNVIIPSKSEGDTVNLEVDVLGKYVERSLSSVLDRLSALEGWKKATELKLASMEG 714 R +FSGIVEE G V L K + LWDG++GEGVE+ V A TVL+GA EGCSIAVNGVCLTVT F + GLAPETLRR+NL G VNLERALP DGRNSGHFVQGHVDDVG I +M D ++L V++R P LM++IVPKGFI VDGTSLTVCE + + WF FMLVAYTQ+++ +P K G+ VNLEVDV+ KYVERS+ +++DR++ LE KLA++EG Sbjct: 2 RCVFSGIVEEIGEVVRLEKRGDLTLWDGSVGEGVEMEVAASTVLEGAYEGCSIAVNGVCLTVTKFDDKTACFGLAPETLRRTNLHAAGPGTLVNLERALPADGRNSGHFVQGHVDDVGVIESMTPDGEALTVRIRPPAHLMKYIVPKGFICVDGTSLTVCEADPGKGWFDFMLVAYTQQHIALPKKKVGEQVNLEVDVMAKYVERSVGALVDRVAELEA-------KLAALEG 227
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Match: B7G545_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G545_PHATC) HSP 1 Score: 278 bits (711), Expect = 4.860e-91 Identity = 135/230 (58.70%), Postives = 173/230 (75.22%), Query Frame = 1 Query: 22 MFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAKTVLDGATEGCSIAVNGVCLTVTSFSREE--FKVGLAPETLRRSNLGDLEKGDGVNLERALPVDGRNSGHFVQGHVDDVGTILNMEMDKDSLVVKVRAPRDLMRFIVPKGFISVDGTSLTVCEVNYEECWFSFMLVAYTQRNVIIPSKSEGDTVNLEVDVLGKYVERSLSSVLDRLSALEGWKKATELKLAS 705 MF+GIVEE G V SL + D + LWDG G G ELTVKA +++GA GCSI V+GVCLT T +E F+VGLAPET+RR+ LGDL+ GD VNLERA + GRNSGHFVQGHVDD G I++ D+DSL K++ D++ +IVPKGFI++DGTSLTVCEV+Y+E WF+FMLV YTQ+ +I+P+K GD VNLEVDVLGKY E +L++++ RL ALE ++ E L + Sbjct: 1 MFTGIVEEMGEVVSLTQRDDMPLWDGTKGSGTELTVKASIMMEGAYLGCSICVSGVCLTATELDYDESIFRVGLAPETIRRTYLGDLKTGDAVNLERASEIGGRNSGHFVQGHVDDTGEIIDRWTDEDSLFFKIKVTPDVLAYIVPKGFIAIDGTSLTVCEVDYQEKWFTFMLVEYTQKKIIVPAKKVGDRVNLEVDVLGKYSENALAALIPRLEALEAKVESLEKALVA 230
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Match: A0A7S2RA03_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA03_9STRA) HSP 1 Score: 277 bits (708), Expect = 1.170e-90 Identity = 136/205 (66.34%), Postives = 159/205 (77.56%), Query Frame = 1 Query: 1 RRDVVRAMFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAKTVLDGATEGCSIAVNGVCLTVTSFSREEFKVGLAPETLRRSNLGDLEKGDGVNLERALPVDGRNSGHFVQGHVDDVGTILNMEMDKDSLVVKVRAPRDLMRFIVPKGFISVDGTSLTVCEVNYEECWFSFMLVAYTQRNVIIPSKSEGDTVNLEVDVLG 615 RR VVRAMFSGIVEE GSV SL K+ + LWD ++GEG EL ++A T LDGA G SIA+NGVC TVT F + F VGLAPETLRRSNLGDL G+ VNLER+LP DGRNSGHFVQGHVD GTIL+ E + +SL +KV +LMR+IVPKG+I+VDGTSLTVC+VN E WF+FMLVA+TQ +I+P K G VNLE DVLG Sbjct: 23 RRSVVRAMFSGIVEEMGSVQSLTKSKEMTLWDDSVGEGTELVIEASTALDGAYLGASIAINGVCTTVTDFDEKSFTVGLAPETLRRSNLGDLGAGEAVNLERSLPADGRNSGHFVQGHVDCTGTILSKEREGESLWIKVAPSAELMRYIVPKGYIAVDGTSLTVCDVNQSEGWFTFMLVAFTQTKIIVPQKPVGALVNLEADVLG 227 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10053.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10053.115.1 >prot_P-canaliculata_contig10053.115.1 ID=prot_P-canaliculata_contig10053.115.1|Name=mRNA_P-canaliculata_contig10053.115.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=271bp MFSGIVEETGSVSSLVKNDAVKLWDGALGEGVELTVKAKTVLDGATEGCSback to top mRNA from alignment at P-canaliculata_contig10053:1354..3604+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10053.115.1 ID=mRNA_P-canaliculata_contig10053.115.1|Name=mRNA_P-canaliculata_contig10053.115.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2251bp|location=Sequence derived from alignment at P-canaliculata_contig10053:1354..3604+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10053:1354..3604+ >mRNA_P-canaliculata_contig10053.115.1 ID=mRNA_P-canaliculata_contig10053.115.1|Name=mRNA_P-canaliculata_contig10053.115.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at P-canaliculata_contig10053:1354..3604+ (Pelvetia canaliculata dioecious)back to top |