mRNA_P-canaliculata_contig100486.110.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: A0A6H5KHY2_9PHAE (Bulb-type lectin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY2_9PHAE) HSP 1 Score: 104 bits (259), Expect = 6.110e-26 Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1 Query: 1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGSQPGDFRRNVLPSGSV 216 KE A YDY KPGLS+NT +FT NVW+LTTHVGFGV +A+YKG+ T +V FSP+G+Q GDF RNVLP GSV Sbjct: 14 KEEARYDYGKPGLSSNTSHFTANVWRLTTHVGFGVFRAKYKGESTMWVVGYFSPRGNQAGDFARNVLPRGSV 85
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: D8LBB2_ECTSI (Novel protein (Wu:fd05a10) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB2_ECTSI) HSP 1 Score: 102 bits (253), Expect = 3.220e-24 Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1 Query: 1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGSQPGDFRRNVLPSGSV 216 KE A YDY KPGLS+NT +FT NVW+LTTHVGFGV +A YKGK T +V A FSP+G+Q GDF RNVL GSV Sbjct: 126 KEEAGYDYGKPGLSSNTSHFTANVWRLTTHVGFGVFRATYKGKSTMWVVAYFSPRGNQAGDFARNVLRRGSV 197
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: UPI0003495F59 (CAP family protein n=1 Tax=Nocardiopsis lucentensis TaxID=53441 RepID=UPI0003495F59) HSP 1 Score: 64.7 bits (156), Expect = 3.910e-11 Identity = 33/68 (48.53%), Postives = 38/68 (55.88%), Query Frame = 1 Query: 13 HYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYK-GKITCFVAAAFSPKGSQPGDFRRNVLPSGS 213 HYDY+ PG S+ TGNFT VWK T VG G+ R + G C V F P G+ G F NVLP S Sbjct: 116 HYDYNTPGFSSKTGNFTQLVWKSTERVGVGIAATREENGWHGCMVVGRFDPPGNYVGRFEENVLPPNS 183
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: D7FLA1_ECTSI (Contains SCP domain which is found in plant PR1 and cysteine-rich proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA1_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 1.800e-10 Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 1 Query: 1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKA--RYKGKITCFVAAAFSPKGSQPGDFRRNVLPSGSVS 219 +EG YDY+ P S T +FT NVW+ TTHVGFG G A +Y +V A F G+ F NVLP SVS Sbjct: 76 QEGTLYDYENPAFSPATRHFTQNVWRRTTHVGFGFGSAVDQYGKYWVSYVVAKFFTPGNVVDQFEGNVLPPVSVS 150
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: A0A1B8XYW5_XENTR (Uncharacterized protein (Fragment) n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A1B8XYW5_XENTR) HSP 1 Score: 58.2 bits (139), Expect = 3.930e-8 Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1 Query: 1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGS--QPGDFRRNVLPSGS 213 KE +Y++ KPG A+TG+FT VWK + VG G+ + GK V A ++P G+ PG + RN+LP GS Sbjct: 485 KEEKNYNFSKPGYQADTGHFTQMVWKASKEVGVGLASS---GKGMLIVVAQYNPSGNITNPGFYGRNILPRGS 554
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: Q5U4W9_XENLA (GLI pathogenesis-related 2 S homeolog n=6 Tax=Xenopus TaxID=8353 RepID=Q5U4W9_XENLA) HSP 1 Score: 58.2 bits (139), Expect = 3.950e-8 Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 1 Query: 1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGS--QPGDFRRNVLPSGS 213 KE +Y++ KPG A+TG+FT VWK + VG G+ + GK V A ++P G+ PG + RNV P GS Sbjct: 673 KEEKNYNFSKPGYQADTGHFTQMVWKASNEVGVGLASS---GKGMIIVVAQYNPSGNITNPGFYARNVFPQGS 742
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: A0A0K0E6I9_STRER (SCP domain-containing protein n=1 Tax=Strongyloides stercoralis TaxID=6248 RepID=A0A0K0E6I9_STRER) HSP 1 Score: 57.0 bits (136), Expect = 6.980e-8 Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = 1 Query: 16 YDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGSQPGDFRRNVL 201 YD+ K G SA TG+FT VWK TTH GFGV + +V +SP G+ PG+F NV Sbjct: 194 YDFSKQGHSAETGHFTQLVWKDTTHAGFGV----VEKDDVVYVVCKYSPPGNYPGEFEANVF 251
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: A0A0N4UTA7_ENTVE (SCP domain-containing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UTA7_ENTVE) HSP 1 Score: 53.9 bits (128), Expect = 7.710e-8 Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 1 Query: 13 HYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGSQPGDFRRNVLP 204 +Y+Y PG ANTG+FT VWK + VG G+ K+ G V A + P G+ G F NVLP Sbjct: 20 YYNYSCPGFCANTGHFTQLVWKSSQRVGVGIAKSSRTGMTV--VVANYYPAGNMMGQFPSNVLP 81
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: Q6DCW5_XENLA (GLI pathogenesis-related 2 L homeolog n=5 Tax=Xenopus laevis TaxID=8355 RepID=Q6DCW5_XENLA) HSP 1 Score: 56.6 bits (135), Expect = 1.370e-7 Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 1 Query: 1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGS--QPGDFRRNVLPSGS 213 KE +Y++ K G A+TG+FT VWK + VG G+ + GK V A ++P G+ PG + RNVLP GS Sbjct: 469 KEEKNYNFSKSGYQADTGHFTQMVWKASKEVGVGLA---FSGKGMIIVVARYNPSGNITNPGFYSRNVLPRGS 538
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: UPI001129AB8A (uncharacterized protein LOC115097266 isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001129AB8A) HSP 1 Score: 55.1 bits (131), Expect = 4.830e-7 Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1 Query: 1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGS--QPGDFRRNVLPSGS 213 KE +YD+ P ANTG+FT VW+ + VG VGKA GK V A ++P G+ PG + NVLP+GS Sbjct: 664 KEETNYDFSNPDYQANTGHFTQMVWRSSKEVG--VGKAT-NGKGMFIVVALYNPTGNITNPGYYSSNVLPAGS 733 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100486.110.1 >prot_P-canaliculata_contig100486.110.1 ID=prot_P-canaliculata_contig100486.110.1|Name=mRNA_P-canaliculata_contig100486.110.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=74bp KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAback to top mRNA from alignment at P-canaliculata_contig100486:527..748+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100486.110.1 ID=mRNA_P-canaliculata_contig100486.110.1|Name=mRNA_P-canaliculata_contig100486.110.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at P-canaliculata_contig100486:527..748+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100486:527..748+ >mRNA_P-canaliculata_contig100486.110.1 ID=mRNA_P-canaliculata_contig100486.110.1|Name=mRNA_P-canaliculata_contig100486.110.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at P-canaliculata_contig100486:527..748+ (Pelvetia canaliculata dioecious)back to top |