Homology
BLAST of mRNA_P-canaliculata_contig10046.108.1 vs. uniprot
Match:
D7FNR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR2_ECTSI)
HSP 1 Score: 217 bits (552), Expect = 4.380e-62
Identity = 99/129 (76.74%), Postives = 113/129 (87.60%), Query Frame = 3
Query: 606 KYIVPKYAKSAISGEWVLMWQNTGAVFRLRLSEDGQFESFGGLGTGHLGGRWNTWDADRMFMTVVRSKSHGVQVNGDTMFWGTKIIGPPDSEIPLKISGYVMYGFLEPTCVGRFIMRRSQEAQDGENDT 992
KY+ PKY+K+AI+G+WVLMWQ+TGAVFRL L ED QFES GLG+G LGGRWN W +RMFMTVVRSKSHGVQ++GD MFWGTK+ GPPDS+IPLKISGYVMYGFLEPTCVGRFIMRRSQE + + DT
Sbjct: 163 KYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERMFMTVVRSKSHGVQMHGDHMFWGTKLEGPPDSKIPLKISGYVMYGFLEPTCVGRFIMRRSQEGRTSDEDT 291
BLAST of mRNA_P-canaliculata_contig10046.108.1 vs. uniprot
Match:
A0A835YV66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV66_9STRA)
HSP 1 Score: 114 bits (286), Expect = 6.160e-25
Identity = 63/158 (39.87%), Postives = 85/158 (53.80%), Query Frame = 3
Query: 510 PLQAGERENVSRFESVDS*LLCFRSHAPTYQGKYIVPKYAKSAISGEWVLMWQNT----GAVFRLRLSEDGQFESFGGLGTGH-LGGRWNTWDADRMFMTVVRSKSHGVQVNGDTMFWGTKIIGPPDSEIPLKISGYVMYGFLEPTCVGRFIMRRSQE 968
P G+ + S+ + L+ Q I P Y+K +SG W+L+ G VF L L+EDG F S G+G G L GRWNTWD ++ +TVVR KS G Q+ D +WG KI G D P +I+G +MYG+LEPT +G F M R +
Sbjct: 104 PFVVGDFQMTPVVASMSTDLMALARRRDEQQS--ITPLYSKKVLSGPWLLVHSGVSGLRGGVFELMLTEDGGFASVRGVGAGGMLAGRWNTWDREKFILTVVRLKSRGAQMTADHQYWGFKIHG--DGVTPTRITGEIMYGYLEPTSIGCFTMMRPSQ 257
BLAST of mRNA_P-canaliculata_contig10046.108.1 vs. uniprot
Match:
A0A6H5LDX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX9_9PHAE)
HSP 1 Score: 95.5 bits (236), Expect = 1.090e-17
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 3
Query: 606 KYIVPKYAKSAISGEWVLMWQNTGAVFRLRLSEDGQFESFGGLGTGHLGGRWNTWDADRM 785
KY+ PKY+K+AI+G+WVLMWQ+TGAVFRL L ED QFES GLG+G LGGRWN W +R+
Sbjct: 282 KYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERL 341
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10046.108.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 4.38e-62 / Id = 76.74 Expect = 6.16e-25 / Id = 39.87 Expect = 1.09e-17 / Id = 68.33 Sequence D7FNR2_ECTSI A0A835YV66_9STRA A0A6H5LDX9_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-01_004560.1 Exons 5 Model size 1862 Cds size 375 Stop 1 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815578.0185034-UTR-P-canaliculata_contig10046:7015..7843 1622815578.0185034-UTR-P-canaliculata_contig10046:7015..7843 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10046 7016..7843 - 1693494147.4566026-UTR-P-canaliculata_contig10046:7015..7843 1693494147.4566026-UTR-P-canaliculata_contig10046:7015..7843 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10046 7016..7843 - 1622815578.0993907-UTR-P-canaliculata_contig10046:10598..11126 1622815578.0993907-UTR-P-canaliculata_contig10046:10598..11126 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10046 10599..11126 - 1693494147.5136766-UTR-P-canaliculata_contig10046:10598..11126 1693494147.5136766-UTR-P-canaliculata_contig10046:10598..11126 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10046 10599..11126 - 1622815578.1137903-UTR-P-canaliculata_contig10046:11376..11507 1622815578.1137903-UTR-P-canaliculata_contig10046:11376..11507 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10046 11377..11507 - 1693494147.5530522-UTR-P-canaliculata_contig10046:11376..11507 1693494147.5530522-UTR-P-canaliculata_contig10046:11376..11507 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10046 11377..11507 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815578.0360267-CDS-P-canaliculata_contig10046:7843..7951 1622815578.0360267-CDS-P-canaliculata_contig10046:7843..7951 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10046 7844..7951 - 1693494147.4678752-CDS-P-canaliculata_contig10046:7843..7951 1693494147.4678752-CDS-P-canaliculata_contig10046:7843..7951 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10046 7844..7951 - 1622815578.055449-CDS-P-canaliculata_contig10046:8371..8416 1622815578.055449-CDS-P-canaliculata_contig10046:8371..8416 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10046 8372..8416 - 1693494147.4805684-CDS-P-canaliculata_contig10046:8371..8416 1693494147.4805684-CDS-P-canaliculata_contig10046:8371..8416 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10046 8372..8416 - 1622815578.069679-CDS-P-canaliculata_contig10046:8702..8802 1622815578.069679-CDS-P-canaliculata_contig10046:8702..8802 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10046 8703..8802 - 1693494147.4947755-CDS-P-canaliculata_contig10046:8702..8802 1693494147.4947755-CDS-P-canaliculata_contig10046:8702..8802 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10046 8703..8802 - 1622815578.0851862-CDS-P-canaliculata_contig10046:10476..10598 1622815578.0851862-CDS-P-canaliculata_contig10046:10476..10598 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10046 10477..10598 - 1693494147.50448-CDS-P-canaliculata_contig10046:10476..10598 1693494147.50448-CDS-P-canaliculata_contig10046:10476..10598 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10046 10477..10598 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10046.108.1
>prot_P-canaliculata_contig10046.108.1 ID=prot_P-canaliculata_contig10046.108.1|Name=mRNA_P-canaliculata_contig10046.108.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=125bp
MWQNTGAVFRLRLSEDGQFESFGGLGTGHLGGRWNTWDADRMFMTVVRSK back to top mRNA from alignment at P-canaliculata_contig10046:7016..11507-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10046.108.1 ID=mRNA_P-canaliculata_contig10046.108.1|Name=mRNA_P-canaliculata_contig10046.108.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4492bp|location=Sequence derived from alignment at P-canaliculata_contig10046:7016..11507- (Pelvetia canaliculata dioecious)GTACACACTGCGGTGAGCGGGGTGGGCGAGTCGGGCGGGCAAGACCAGCA
TGGGCGCTGGCGTGTGCGGGGCAACGAGTTCTCGCTAACGGTCGACCGAC
GCTCGAAGTCCAGGATGCTTGAAGACTTGAG GTACATCACTGCATATAGC
TACAACAGCACTCACCTCAGCGCCTACCGCACGTGTACGAATGACGTGAT
AATCCTGCAACTAACAGCGGTGTCTCTTTATGTGTACCTATTTTTTACAC
CGTTGGCTGCCCAAGCAACAACATCGGCAACGCTACCACGCTTTCCAACT
TTTCGCAAGTGTGAAAAGGTTTGCTCAGCGCTGCGACTGCCTTACGTTGA
CCTCCGCGACTGATATTCACCTCGAGAACAGATACGTTGGGGTGCTGAAG
AAGTTCAGCAAGTACATTGAGGGAAGCGTGATCGAGGGAGCGATGGACCC
CGCCGTCGTCGGAAAGTTCAAGATGACGCCACTCGTTTCGAGCATGGCTT
CTGACCTCAAGAAGGCGGCTGAGGCCAACGATTCGGTCAGCGGCTTGTGT
GGAGGACGGCAGCCGAACGTCGTCCGCTATCACCCGTTCGTTTCGTATTC
TTACTCTGCCAATGGACTACTGCTGTAGTCCGATCTTGATCCCGTTCTAT
TCTTGATTATAGCAAGTTCTTACGCTCGAAACGCCCGACTTTTGCCCCTT
GAAGATCAGATGCGTCGAACGTTCCTTTTCCTAGGAGCACTCCTCAATGA
CAACATTAACCATTACAGGCGGGTGAACGTGAAAACGTTTCCCGTTTCGA
GAGTGTTGACTCTTAACTGCTCTGCTTCCGCTCACATGCTCCTACATATC
AGGGCAAGTACATCGTTCCAAAGTATGCAAAGTCCGCCATCTCAGGGGAA
TGGGTTCTG ATGTGGCAGAACACTGGGGCCGTCTTCCGACTCCGCCTGAG
CGAAGATGGGCAATTCGAGAGCTTCGGAGGATTAGGAACGGGGCATCTAG
GAGGGAGATGGAATACTTGGGATGCTGACAG GTGCGAGCAAAGGATACGA
TCGGAGACTACAGTGATCCTAGCCCGGTCTACGGGATAGAGGACACGTTT
AAAGTGAAGTGAAAAGAGCGCTGATTATGGGGATGCTGCGATCCGACACG
AGTGGAAAGCATCTAACGTAAGGCCCAAACGTGCTAGCTGTACACCAACT
CCTCGAGTTAGTCAAATGTTGCACAGCTGGGCCAGGGAAATATTAACTTT
CCCTGTTCAGCTGACCACGAGCAGGATTGGCAACTTTACCCGGTTGATCA
ATACTCTGCTGCAAGTGGTGGTCATACATAAATACATACATGGGTAATAG
ATGGACCACATAATGCGGAGTCCACATGCTCTGTACTTGCTGAGTTCCTT
TTGTTGTTGAGAAACCGATGAGTGTTGCGAAGGCACTGCCGCTTTTGTGG
AGTATGTAACGACCTCTTCTACAGCACATACTGCCTGTTAGCTCGTTGAC
CACTAGACGTGGTCATCGATTACATCGTACTGTACTGTATTTATCGTTGT
TTGTATATATGTATGTATGGTCACACATATAGCAAGAGTATGGATCGACC
GGGTAAGGTTTCCAATCCTGCTCATGGTCAGCTGAACAGGGAAAATAAAC
ACTTTCCTGTCCGCGTTCGCGCCTGGGAATTTGGTCTCGCGAGACGTGAT
CGGCAGTCCCATCCCGCGTCAGCCTGCCCATCTCCATACTCAGGCTGAAT
CTGGTGCNNNNNNNNNNTATCAGGACAGTCCCGAGTTTATCGGGTCGCGC
AATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACGGGGCCA
GTAAACCTCGATGTAGTTCCAAGCGAGTGCTGCTTCGGCAGGCCATCATG
GGCCAATTAATATGTGCCTCTCTTTTCCACACCCACTATTGGTATGAAGT
GGGTATGTTGAAAGTACCGGCGTATTTAATCGGAGACTTGATCCCCCGTG
TCCTCATGTAGTTTCCCCCCCCTAATATTATATAAACATTTATTTTATTT
TATAAAAACAGTAGAGAAATCGTTTACCTAAGGCATATGAGCTCATTGTT
TAAAATATTTTTATATTGTCATTTATGGAACGTGGGACAAGATATCCCGA
ACAACCTGAAGAGAAAAAAAAAATGTTCGGTTTTCAGCATTTTGTTTTTC
CTTGCTTACAGACTACTACGTCAGAACACCTGCCCCCCCCTTTCTAGAGA
AGATATCTGATCTTGATACATGTATACGCATGTAAGTCTGATGGGGGATG
AGAATGCAAAGAACCTGATTTCTATCATATTAAAAGTGTAACACAGCGAT
ATGAAGCCCAATGCAGTTACTGTTCACACGATAGAAAAATCTAAACGCGT
TCAAACCTTCCAGCTGATGTGGCTTCCTCATTTCAATGAAATAAGGAAAG
GGTTCGATCCCCATCGTCGTTAAGCGATCGTTTCATGTGATAGTTAAAAG
ATTAGAGAGGATTTTTTTTTTGTGGGTGTAGGTATTTTTTTGAGGTCCTT
CGCCAGCGCTTGGTGCATGTTGCCGCTTGCAAAGATTTCAAACCTTCCCA
TTAATAGCTCAACACGACTCTGAGCATAACAACTATAATAGTCTCAGCGA
ACTCTATGGGGGGGGTATCGTGTGTAACTCGCTTCGACGTTTCTTGATGT
GTCAGGATGTTCATGACCGTGGTGCGTTCAAAGAGCCATGGGGTCCAGGT
GAACGGAGACACGATGTTCTGGGGAACGAAGATCATTGGCCCGCCCGATT
CGGAG GTGAAATAATGCCAAGTGACAGTCCAGTTAGGTGCATGACCAGAT
ACTTGTTTTCCAAGGCTACGGGAAGCACGATATGGTCCAGTGGTCCCCAC
ACACGCTGCACTGTTTTTCGCTCTGAAGGCACAGACGCTTTGTGAGAGCT
GCGATAAGTGACGCGCTCCTATTTATTCACTTCACGAGAGTGGATATCAA
CGCGCAACTGTCGCATGTATTGCAGATCCTCGAGCGTCACCTGCGTTGAG
TCGTGACTTGCGCAACCCTCCTGATTTTTGCTCCCGAACAGATTCCGTTG
AAGATATCTGGGTACGTCATGTACGGTTTCCTTGAG GTGGGCGCCGAGGT
TCCCGTCCACGAACGACAGGGTTGCTCTAATAAAACCACAAACCGCAGTG
TGGAAAACAGTGGCGTAGCAGGAGGCGACATGTGTGAACCGAGAAGTCCT
CCGTACAATCAAATGACGATAAAAATCTACAAGTTGTGTTGAGCAACATT
CCGGTGATCATAGGTTCGCTGGAAGGGTCCCGAATCCATTTCAACCTTTT
TTTCATACCTGTGTGTTTGATATCGAGATCCGTTGTCTCGGTAGAGTCCG
CCATTTCTTACCCGCCAAGCCGTGCCATCTTCGGCTGGGGGCAACAGCTT
CCCGACACGCACACCCAACGCTCATCGTTCGCTCGAGCATTCAGAAGCAG
TGTGAGGTGACTGATCACTCCCTCTCAACCTTGTCCCTCGCGTTTTGACC
AAGCAGCCGACTTGCGTCGGGCGCTTCATCATGCGCCGCAGTCAAGAGGC
TCAAGACGGCGAAAACGATACGGATGCCGACGACGACGATGATCGCGACG
AAGACCTCGTGTAA GCCTAAAGCATGCGCTAGGCCCGAGCGATTTTGAAG
TCTCCGCAGTGCTAGACTCCTTTCGAGACAACACCCCAAGCAAGGTTTGT
ATAGAAGTTGGTGTGAGGGTTGGAGCTTGCGCGAGATCAGTGGGATGCGG
GCTGCGCTCAGATATTTTGCAACCCTCGTCAACTTAACCGGAATGGCCTT
ACGGTGACAAATCAGTATATATCGTGTAAACATAGTACGGGCCATGTACA
GGAGAGAGGCGATTTTTGCGAACAAAAGTTGTTGATGTAACAGACGGGGG
GGAAACCTCGCGATTGCCGTGGCTCAGCACGGCTGTACGGTAATATGTGT
TAATGGTTTGTCGGGTTTCACGCGACTTATTCGGCTGCACCGTGAACTTA
GAGGTAATCCGTGTCGCGATCCGAGGTTTTATGTAGAGTTGGAATGTCTT
CCAGAGCGGAAATGGTGTTCTGTAACGCTATCGAAAGATGAGAAGGCAAA
CAACATGACTCGTCTGTGCGCTGTACATACGACGTAAATATCTTTACGCA
GATTTGACGGATGGGGAAGGGCAAGTTGAGTGTCTCCCTGGCACAGTCTA
TGTAACCGGTTGGATTTCAGTCAGTTGTCGAAATCCACAGCTAGAAAAAA
TATTTGTCATTTGCACCTTAATTGATACAGAAATACTCCAATCAGCATCT
AATTAGCAAAGGGGATAGGACGTAAGTGTATCTGCCTATAAACTTGAGCA
ATGTAGAAAAAAAATGTTCGAGAGCTTTGATGCTCATAATATTAAATGAT
CGCACGTTCACGGCCTAAATACACCTGCATTAACGAGCTCCA back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10046:7016..11507-
>mRNA_P-canaliculata_contig10046.108.1 ID=mRNA_P-canaliculata_contig10046.108.1|Name=mRNA_P-canaliculata_contig10046.108.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at P-canaliculata_contig10046:7016..11507- (Pelvetia canaliculata dioecious) back to top