mRNA_P-canaliculata_contig100407.103.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Match: UPI0003F55FAF (hypothetical protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003F55FAF) HSP 1 Score: 255 bits (652), Expect = 1.290e-82 Identity = 123/220 (55.91%), Postives = 153/220 (69.55%), Query Frame = 1 Query: 55 AQNTGAVFGPGVTEGHRSAQYRGTFDPDSG----GFAQRLHYQQAINDDLMWRVIGATRKTDDSDFDPDFVQAELFWELSEDEDVWRTGFRFDLTIRNDNRAEGGGVNWTNQVALGNEWSTRFLVLAGFDFGENARDGVFLQTRASVTKRLENGVSIGAEMFNFYGSTSNFGGFENQRHQIGPVAIIPVTPSWDVYGGALFGVTNATPDLELRLWLTKKF 702 AQNTG VF P V +GH+SAQYR +PD+ GFAQRLHYQQ++N D+MWRV+G TRKT DSDFD DF+QAELFWELS+DED +TG RFD +R++ RAE G+NWTNQ N WS R L+L GENA DGV LQTR + +++E+G ++G +MFN Y T N G F+ Q H IGP P+ +Y G LFG++ A PDLE RLWLT+ F Sbjct: 24 AQNTGGVFPPMVNDGHKSAQYRIAINPDNAAGETGFAQRLHYQQSLNGDMMWRVVGQTRKTADSDFDFDFLQAELFWELSDDEDQHKTGLRFDARLRDEGRAEQLGLNWTNQFNFENGWSARALILTAVQIGENAADGVNLQTRGQIARKMESGHTLGVDMFNNYVRTGNIGSFKEQSHTIGPFVAAPLGDGVSLYAGPLFGLSKAAPDLEARLWLTRGF 243
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Match: A0A351D0Y4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A351D0Y4_9GAMM) HSP 1 Score: 247 bits (631), Expect = 1.730e-79 Identity = 119/230 (51.74%), Postives = 155/230 (67.39%), Query Frame = 1 Query: 19 VLLLLLSLHCLEAQNTGAVFGPGVTEGHRSAQYRGTFDPDSG----GFAQRLHYQQAINDDLMWRVIGATRKTDDSDFDPDFVQAELFWELSEDEDVWRTGFRFDLTIRNDNRAEGGGVNWTNQVALGNEWSTRFLVLAGFDFGENARDGVFLQTRASVTKRLENGVSIGAEMFNFYGSTSNFGGFENQRHQIGPVAIIPVTPSWDVYGGALFGVTNATPDLELRLWLTK 696 V LLL + AQNTG VF P V +GH++ QYRG DPD+ GFAQRLHY+++++DD MWRVIG TRKT DSDFD DF+QAELFWE SED+ +RTG RFD+ IR+ NR GVNW NQ N+W+ R + + FD G+NARDG LQ+R + K L G ++G EM+N YG T+N G F+ QRH +GP+ + + W + G LFG++ A D E R+WLT+ Sbjct: 8 VFTLLLFTVPIHAQNTGGVFPPMVNDGHKAFQYRGVVDPDNSVGEVGFAQRLHYEESLDDDRMWRVIGQTRKTTDSDFDFDFMQAELFWEFSEDDPNYRTGMRFDVRIRDGNRPNQLGVNWMNQFYFNNDWNARAVFMTSFDVGDNARDGWNLQSRFRLDKNLGAGHTLGVEMYNDYGRTNNIGSFDEQRHTVGPIYNMRLGSKWSAFSGVLFGISEAASDAEFRIWLTR 237
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Match: A0A8J3A5P7_9PROT (Uncharacterized protein n=3 Tax=Aquisalinus luteolus TaxID=1566827 RepID=A0A8J3A5P7_9PROT) HSP 1 Score: 238 bits (607), Expect = 8.330e-76 Identity = 110/220 (50.00%), Postives = 149/220 (67.73%), Query Frame = 1 Query: 55 AQNTGAVFGPGVTEGHRSAQYRGTFDPDSGG----FAQRLHYQQAINDDLMWRVIGATRKTDDSDFDPDFVQAELFWELSEDEDVWRTGFRFDLTIRNDNRAEGGGVNWTNQVALGNEWSTRFLVLAGFDFGENARDGVFLQTRASVTKRLENGVSIGAEMFNFYGSTSNFGGFENQRHQIGPVAIIPVTPSWDVYGGALFGVTNATPDLELRLWLTKKF 702 AQ TG VFGP V EGH+SAQYR PD+ G A RLHYQQ+I+ MWR++ S D D++Q +LFW+++ DE W++GFRFD R+D+R G NW NQV L + WSTRFLV++ D G+NA DG++LQTRA++ ++L+ G G EMFN YG+T + GGF++Q HQIGP A +PVT +W V G L G++NA D +LRLW+ ++F Sbjct: 23 AQTTGGVFGPVVNEGHKSAQYRFGLAPDANGSDDAIAHRLHYQQSIDGSKMWRIVAQANDRPGSGLDFDYLQGQLFWQVTPDERRWQSGFRFDARWRDDDRPGQIGANWANQVKLSDRWSTRFLVMSAIDIGDNASDGIYLQTRANLARKLKGGAQAGVEMFNNYGNTEDLGGFDDQSHQIGPFASLPVTENWSVVGSVLVGMSNAASDTDLRLWVGREF 242
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Match: A0A8J2V253_9PROT (Uncharacterized protein n=1 Tax=Aquisalinus flavus TaxID=1526572 RepID=A0A8J2V253_9PROT) HSP 1 Score: 228 bits (582), Expect = 2.600e-72 Identity = 107/220 (48.64%), Postives = 143/220 (65.00%), Query Frame = 1 Query: 55 AQNTGAVFGPGVTEGHRSAQYRGTFDPDSGG----FAQRLHYQQAINDDLMWRVIGATRKTDDSDFDPDFVQAELFWELSEDEDVWRTGFRFDLTIRNDNRAEGGGVNWTNQVALGNEWSTRFLVLAGFDFGENARDGVFLQTRASVTKRLENGVSIGAEMFNFYGSTSNFGGFENQRHQIGPVAIIPVTPSWDVYGGALFGVTNATPDLELRLWLTKKF 702 AQ TG VFGP V EGHRSAQYR PDS G A RLHYQ+AIN + R++ D D++Q +LFW+++ DE W++GFRFD R+DNR G NWTNQ+ L + WSTRFLV++ D GE+A+DG++LQTRA++ ++ G G E+FN YG+T G FE+Q HQIGP A +PV W V G L G+++A D +LRLW+ ++F Sbjct: 2 AQTTGGVFGPVVNEGHRSAQYRFGLVPDSNGSDDSIAHRLHYQKAINRSTIGRIVAQANDRPGGGLDFDYLQGQLFWQVTPDERTWQSGFRFDARWRDDNRPGQLGANWTNQIKLSDGWSTRFLVMSAVDVGEDAKDGIYLQTRANIARKFAGGAQAGVEIFNNYGTTEGLGSFEDQSHQIGPFASLPVNKEWSVVGSVLLGMSDAASDTDLRLWVGREF 221
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Match: A0A420WD08_9PROT (Outer membrane putative beta-barrel porin/alpha-amylase n=2 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WD08_9PROT) HSP 1 Score: 218 bits (556), Expect = 3.550e-68 Identity = 110/219 (50.23%), Postives = 136/219 (62.10%), Query Frame = 1 Query: 55 AQNTGAVFGPGVTEGHRSAQYRGTFDPDSGG---FAQRLHYQQAINDDLMWRVIGATRKTDDSDFDPDFVQAELFWELSEDEDVWRTGFRFDLTIRNDNRAEGGGVNWTNQVALGNEWSTRFLVLAGFDFGENARDGVFLQTRASVTKRLENGVSIGAEMFNFYGSTSNFGGFENQRHQIGPVAIIPVTPSWDVYGGALFGVTNATPDLELRLWLTKKF 702 AQNTG V P V HRSAQYR T DPD G FAQRLHYQQAINDD+MWRV+G TRKT +SDFD DFVQAELFW+++ + ++TG R D R +R E G NW N L + W R + G+NA G+ LQTRA + L G SIG E+FN YG T + GF+ Q H +GP +P+T + VY LFG++ A D ELR W+ + F Sbjct: 16 AQNTGGVSTPVVNIDHRSAQYRITLDPDDNGQTGFAQRLHYQQAINDDMMWRVVGQTRKTAESDFDFDFVQAELFWQVTPNAMDYQTGLRVDARFRGGDRPEQIGANWLNLWTLSDRWQARASAMTHVQMGDNAAKGLALQTRAQLMHSLPEGRSIGVEIFNDYGRTGSVQGFDKQNHALGPFVTMPITDNISVYSSVLFGLSEAAADTELRFWIIRSF 234
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Match: UPI0003773520 (hypothetical protein n=1 Tax=Hirschia maritima TaxID=1121961 RepID=UPI0003773520) HSP 1 Score: 218 bits (554), Expect = 7.840e-68 Identity = 107/216 (49.54%), Postives = 138/216 (63.89%), Query Frame = 1 Query: 55 AQNTGAVFGPGVTEGHRSAQYRGTFDPDSGGFAQRLHYQQAINDDLMWRVIGATRKTDDSDFDPDFVQAELFWELSEDEDVWRTGFRFDLTIRNDNRAEGGGVNWTNQVALGNEWSTRFLVLAGFDFGENARDGVFLQTRASVTKRLENGVSIGAEMFNFYGSTSNFGGFENQRHQIGPVAIIPVTPSWDVYGGALFGVTNATPDLELRLWLTKKF 702 AQ+ G VFGP V GH+SAQ R DPDS A R+HYQQ++NDD++ R TRKT+DSD D +FV A +FW+L W+TG RFD R+D+R +W NQ AL ++ S R +V+ D G ARDG+F+QTR S+T +L N + IGAE N YGS+ NFG F +Q HQ G A IP W VY G L GV++A PD L+LW ++KF Sbjct: 23 AQSVGGVFGPVVNAGHKSAQIRLGIDPDSEQMATRVHYQQSLNDDILVRASVQTRKTNDSDLDLNFVDAIVFWQLPNIAAHWQTGVRFDARARSDSRPNAFNAHWMNQFALSDDLSLRAIVMTSKDVGAGARDGIFVQTRTSLTYKLPNSIGIGAEFHNGYGSSENFGSFNDQNHQFGIFANIPFEEKWSVYTGILTGVSDAAPDTNLKLWFSRKF 238
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Match: UPI0008DA6E04 (hypothetical protein n=1 Tax=Hyphomonas sp. Mor2 TaxID=1906738 RepID=UPI0008DA6E04) HSP 1 Score: 212 bits (540), Expect = 8.800e-66 Identity = 104/216 (48.15%), Postives = 137/216 (63.43%), Query Frame = 1 Query: 55 AQNTGAVFGPGVTEGHRSAQYRGTFDPDSGGFAQRLHYQQAINDDLMWRVIGATRKTDDSDFDPDFVQAELFWELSEDEDVWRTGFRFDLTIRNDNRAEGGGVNWTNQVALGNEWSTRFLVLAGFDFGENARDGVFLQTRASVTKRLENGVSIGAEMFNFYGSTSNFGGFENQRHQIGPVAIIPVTPSWDVYGGALFGVTNATPDLELRLWLTKKF 702 AQNT VFGP + G R +YR T+DPD QRLHYQQAIN + WRV+ R T+DSDFDPDF++ EL W++S D ++TGFRF+ R D+R V+W NQ + W+ RFL+ A G + DG+ +QTRAS T L +G IG E F YGSTS++ + Q HQIGPVA+ + W +Y GALFG T A+PD +LRL +T+ + Sbjct: 18 AQNTSGVFGPVINAGDRGWEYRATYDPDDEDVNQRLHYQQAINGAMRWRVVAQVRSTEDSDFDPDFLRGELVWQVSPDAQKYQTGFRFEGRYRFDDRPGDVTVHWINQWKPIDNWTLRFLIGATQQVGNDPADGILMQTRASATTSLADGPKIGVEWFGSYGSTSDWRALDEQNHQIGPVAVWALNGDWSLYTGALFGATEASPDGQLRLRVTRDY 233
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Match: E0TGG5_PARBH (Uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) TaxID=314260 RepID=E0TGG5_PARBH) HSP 1 Score: 207 bits (526), Expect = 1.440e-63 Identity = 99/222 (44.59%), Postives = 142/222 (63.96%), Query Frame = 1 Query: 52 EAQNTGAVFGPGVTEGHRSAQYRGTFDPDSGGFAQRLHYQQAINDDLMWRVIGATRKTDDSDFDPDFVQAELFWELSEDEDVWRTGFRFDLTIRNDNRAEGGGVNWTNQVALGNEWSTRFLVLAGFDFGENARDGVFLQTRASV-----TKRLENGVSIGAEMFNFYGSTSNFGGFENQRHQIGPVAIIPVTPSWDVYGGALFGVTNATPDLELRLWLTKKF 702 +AQ+ G VFGP V EG + +YR F P++ F QR+HYQQ+ +DDLM R + R+TD+S + D++ ELFW+LSED W+TG RFD +RND R VNW NQ L W R ++L+ FG+NA DGV LQTR + + L +G SIG E+F+ YG+T+ F F+ Q H+IGP A++P+ + ++ G LFG+T+ PD ++LW+T+ F Sbjct: 19 KAQSLGGVFGPVVDEGAAALEYRVGFTPETARFGQRIHYQQSFSDDLMGRGVIQVRETDNSHVEFDYLGGELFWQLSEDGRPWQTGLRFDTRLRNDERPHDIAVNWMNQWTLAERWRGRAVILSSVQFGDNAGDGVGLQTRGQIDYALPSGALSSGTSIGLELFSAYGTTAEFRDFDEQSHEIGPYAMLPLDGQFSLFTGVLFGLTDGAPDSNVKLWITRAF 240
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Match: A0A1Y6BJ67_9ALTE (Uncharacterized protein n=1 Tax=Alteromonadaceae bacterium Bs31 TaxID=1304903 RepID=A0A1Y6BJ67_9ALTE) HSP 1 Score: 204 bits (518), Expect = 2.480e-62 Identity = 97/216 (44.91%), Postives = 136/216 (62.96%), Query Frame = 1 Query: 55 AQNTGAVFGPGVTEGHRSAQYRGTFDPDSGGFAQRLHYQQAINDDLMWRVIGATRKTDDSDFDPDFVQAELFWELSEDEDVWRTGFRFDLTIRNDNRAEGGGVNWTNQVALGNEWSTRFLVLAGFDFGENARDGVFLQTRASVTKRLENGVSIGAEMFNFYGSTSNFGGFENQRHQIGPVAIIPVTPSWDVYGGALFGVTNATPDLELRLWLTKKF 702 AQ TG VFGP V E HRSAQYR +D +S +AQRLHYQQA+N D+MWR++ RKT + D DFVQ ELFW+L+ D W G RFDL R+DNR G+++TNQ+ + ++ + R ++L + G++ RDG+ L TRA + + + VS G +M++ YG T++ G +Q HQ GP W V+G L GVT TPD + R++L + F Sbjct: 27 AQTTGGVFGPAVKEEHRSAQYRFAYDDESERYAQRLHYQQAVNGDVMWRMVMQARKTSEQSNDFDFVQGELFWQLAPDTKSWIYGLRFDLRARDDNRPAVAGMHFTNQLKISSKTTVRGILLTAKELGDDGRDGILLSTRARLDHKFSSTVSAGVDMYSVYGLTNDLRGASDQLHQFGPYVATVFAEHWFVFGSVLLGVTEPTPDKQFRIFLGRSF 242
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Match: A0A062UC16_9PROT (Uncharacterized protein n=2 Tax=Hyphomonas beringensis TaxID=1280946 RepID=A0A062UC16_9PROT) HSP 1 Score: 192 bits (489), Expect = 5.610e-58 Identity = 102/240 (42.50%), Postives = 140/240 (58.33%), Query Frame = 1 Query: 1 MKPFLSVLLLLLSLHC------LEAQNTGAVFGPGVTEGHRSAQYRGTFDPDSGGFAQRLHYQQAINDDLMWRVIGATRKTDDSDFDPDFVQAELFWELSEDEDVWRTGFRFDLTIRNDNRAEGGGVNWTNQVALGNEWSTRFLVLAGFDFGENARDGVFLQTRASVTKRLENGVSIGAEMFNFYGSTSNFGGFENQRHQIGPVAIIPVTPSWDVYGGALFGVTNATPDLELRLWLTKKF 702 M P L L L L+ C AQ T + GP V EG R+ YR +DPD+ G AQR+HY A+N L+ R + RKT DSD D D+ QAEL W+L+ D W+ G RFD+ IR+D+R GV+W +QV L + RF + D G +ARDGVFLQTR ++ RL GV G E++N YG+ + ++Q H GP +P+T + + AL G+T A+PD+ RL+LT+ F Sbjct: 1 MMPMLIRLFLCLTTACSVCFGMANAQLTSGISGPVVNEGKRAIGYRAAYDPDANGLAQRVHYDHALNGKLLLRGVAQARKTSDSDVDFDYFQAELRWQLTPDSADWQQGLRFDVRIRDDDRPGLLGVHWMHQVQLTDTVRARFAAIVSGDVGNDARDGVFLQTRGDLSWRLSGGVDFGGELYNSYGAADDILPLDSQSHLAGPFVSVPITDTLKLRTSALLGLTEASPDVTFRLFLTQDF 240 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100407.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100407.103.1 >prot_P-canaliculata_contig100407.103.1 ID=prot_P-canaliculata_contig100407.103.1|Name=mRNA_P-canaliculata_contig100407.103.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=235bp MKPFLSVLLLLLSLHCLEAQNTGAVFGPGVTEGHRSAQYRGTFDPDSGGFback to top mRNA from alignment at P-canaliculata_contig100407:19..723- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100407.103.1 ID=mRNA_P-canaliculata_contig100407.103.1|Name=mRNA_P-canaliculata_contig100407.103.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at P-canaliculata_contig100407:19..723- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100407:19..723- >mRNA_P-canaliculata_contig100407.103.1 ID=mRNA_P-canaliculata_contig100407.103.1|Name=mRNA_P-canaliculata_contig100407.103.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at P-canaliculata_contig100407:19..723- (Pelvetia canaliculata dioecious)back to top |