mRNA_P-canaliculata_contig10040.102.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Match: D7G6Z9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z9_ECTSI) HSP 1 Score: 192 bits (488), Expect = 2.280e-58 Identity = 100/174 (57.47%), Postives = 121/174 (69.54%), Query Frame = 1 Query: 61 ILKYEYPVLARPRDVFDLNMGHDSLPQYISLCKTTNRRKEEF------------GGAVRTRRSPKA---DNTTFLKAIIPNREWTDEGGEWVQTVSNAEWTRADLEALKGKVDATLATCQARPRAICAVREQIFSELFDEIVREVTIECPERGLLLLRLRDEARMNLETYTEIY 537 ILKYE PVLARP FD+ MGHDSLPQYISL + RR +E G T R P+ D T LKAI+PN+E+ D GEWVQTVS +R +LE ++ KV+A LAT QARP A+CAVRE +FSEL+DE++RE+T++ PERGLLLLRLRDE RMNL+TY EIY Sbjct: 60 ILKYEDPVLARPDIAFDMRMGHDSLPQYISLYASDERRPDEATQRLAGVGAAAPGSTRNTTRRPRGGGDDITAVLKAILPNKEYADAAGEWVQTVSGTVRSRGELEKVQNKVEARLATLQARPGAVCAVRESVFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIY 233
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Match: A0A8J2T3N5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T3N5_9STRA) HSP 1 Score: 115 bits (289), Expect = 8.850e-29 Identity = 62/140 (44.29%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 124 HDSLPQYISLCKTTNRRKEEFGGAVRTRRSPKADNTT--FLKAIIPNREWTDEGGEWVQTVSNAEWTRADLEALKGKVDATLATCQARPRAICAVREQIFSELFDEIVREVTIECPERGLLLLRLRDEARMNLETYTEIY 537 HDSL +Y S T R G KA T L +I+P REWT++G WVQ VS+ TR D+ L+ +D L QAR IC VRE+++++ FDE++R+VTI C ERGLLLLR+RDE RM + Y +Y Sbjct: 8 HDSLVKYHSPVVVTTARAAPKKGKKGPATPEKASTQTEDILNSILPPREWTEDGTLWVQYVSSTPATRLDVVNLQESLDRKLQQRQARETGICPVREELYAQCFDEVIRQVTINCAERGLLLLRVRDEVRMTIAAYQTLY 147
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Match: D8LS54_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS54_ECTSI) HSP 1 Score: 114 bits (286), Expect = 1.530e-28 Identity = 62/143 (43.36%), Postives = 85/143 (59.44%), Query Frame = 1 Query: 124 HDSLPQYIS--LCKTTNRRKEEFG---GAVRTRRSPKADNTTFLKAIIPNREWTDEGGEWVQTVSNAEWTRADLEALKGKVDATLATCQARPRAICAVREQIFSELFDEIVREVTIECPERGLLLLRLRDEARMNLETYTEIY 537 H+SL +Y + L TT R + G T P + L +I+P REWTD+G WVQ VS+ TR D+ L+ ++D L QAR IC VRE+++S+ FDE++R+VTI C ERGLLLLR+RDE M + Y +Y Sbjct: 5 HNSLVKYDNPILVSTTGNRGGKGAKKKGQAPTVERPSSQTEDILNSILPPREWTDDGQLWVQYVSSTPATRLDVTNLQEQLDQKLQQRQARETGICPVREELYSQCFDELIRQVTINCAERGLLLLRVRDEIHMTIAAYQTMY 147
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Match: A0A7S2SN15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN15_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.770e-28 Identity = 60/149 (40.27%), Postives = 91/149 (61.07%), Query Frame = 1 Query: 109 DLNMGHDSLPQYIS--LCKTTNRRKEEFGGAVRTRRSPKADNTT----FLKAIIPNREWTDEGGEWVQTVSNAEWTRADLEALKGKVDATLATCQARPRAICAVREQIFSELFDEIVREVTIECPERGLLLLRLRDEARMNLETYTEIY 537 ++N HDSL +Y + L TT ++++ G + P T L +I+P REWT++G WVQ VS+ TR D+ L+ ++D L QAR IC +RE+++++ FDE++R++TI C ERGLLLLR+RDE RM + Y +Y Sbjct: 14 EMNPPHDSLVKYDNAILVSTTKEKQKKSKGKKGQQLPPVERQGTQTEDILNSILPPREWTEDGQLWVQYVSSTPATRLDVITLQEQLDRKLQQRQARETGICPIREELYAQCFDELIRQITINCAERGLLLLRVRDEIRMTVAAYQTLY 162
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Match: A0A7S4NUJ5_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NUJ5_GUITH) HSP 1 Score: 111 bits (278), Expect = 5.110e-28 Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 1 Query: 238 LKAIIPNREWTDEGGEWVQTVSNAEWTRADLEALKGKVDATLATCQARPRAICAVREQIFSELFDEIVREVTIECPERGLLLLRLRDEARMNLETYTEIY 537 L +I+P REWT++G WVQ VS+ TR D+ L+ ++D+ L T QAR IC VRE++F + FDE++R+VTI C ERGLLLLR+RDE RM + Y +Y Sbjct: 58 LNSILPPREWTEDGQLWVQFVSSTPATRLDVINLQEELDSKLQTRQARETGICPVREELFRQTFDEVIRQVTINCAERGLLLLRVRDEIRMRIAAYQTLY 157
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Match: A0A6U4N7B2_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6U4N7B2_HEMAN) HSP 1 Score: 113 bits (283), Expect = 7.770e-28 Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 1 Query: 136 PQYISLCKTTNRRKEEFGGAVRTRRSPKADNTT-FLKAIIPNREWTDEGGEWVQTVSNAEWTRADLEALKGKVDATLATCQARPRAICAVREQIFSELFDEIVREVTIECPERGLLLLRLRDEARMNLETYTEIY 537 P +S K + K+ A+ + KA T L AI+P REWT++G WVQ VS TR+D +L +D L +AR IC +RE+++++ FDE++R++TIEC ERGLLLLR+RDEARM + Y +Y Sbjct: 14 PVLVSSAKDKGKAKKTKAEALGVDKKGKALQTEDILNAILPPREWTEDGELWVQYVSAVPATRSDAISLGESLDQRLQLRRARDSGICTIREELYAQAFDELIRQITIECAERGLLLLRIRDEARMRIAAYQTLY 148
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Match: A0A5B8N0L6_9CHLO (Light chain of dynein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0L6_9CHLO) HSP 1 Score: 113 bits (282), Expect = 1.020e-27 Identity = 62/144 (43.06%), Postives = 87/144 (60.42%), Query Frame = 1 Query: 130 SLPQYIS--LCKTTNRRKEEFGGAVRT------RRSPKADNTTFLKAIIPNREWTDEGGEWVQTVSNAEWTRADLEALKGKVDATLATCQARPRAICAVREQIFSELFDEIVREVTIECPERGLLLLRLRDEARMNLETYTEIY 537 SL +Y S L TT + +E GG + ++S L +I+P REWT++G WVQ VS+ TR D+ L+ K+D L QAR IC VRE+++++ FDE++R+VTI C ERGLLLLR+RDE RM + Y +Y Sbjct: 7 SLVKYDSPVLVSTTKDKGKEKGGRKKKDLPPVEQKSGMTQTEDILNSILPPREWTEDGQLWVQYVSSTPATRLDVINLQEKLDQQLQLRQARETGICPVREELYAQCFDELIRQVTINCAERGLLLLRVRDELRMTIAAYQTLY 150
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Match: L1JVD1_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JVD1_GUITC) HSP 1 Score: 112 bits (281), Expect = 1.160e-27 Identity = 59/137 (43.07%), Postives = 80/137 (58.39%), Query Frame = 1 Query: 127 DSLPQYISLCKTTNRRKEEFGGAVRTRRSPKADNTTFLKAIIPNREWTDEGGEWVQTVSNAEWTRADLEALKGKVDATLATCQARPRAICAVREQIFSELFDEIVREVTIECPERGLLLLRLRDEARMNLETYTEIY 537 +SL +Y KT K + A ++ L AI+P REWT+ G WVQ VS TR+D L ++D L AR IC +RE+I+++ FDE++R+VTI+CPERGLL LRLRDEARM + Y +Y Sbjct: 6 ESLVKYEEAEKT----KSKKSNAAADPKAKSVQTEDILNAILPPREWTEGGELWVQYVSTQMPTRSDAIRLAERLDQRLKLRGAREHGICTIREEIYAQCFDELIRQVTIDCPERGLLFLRLRDEARMRIAAYQSLY 138
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Match: A0A3P8S7N4_AMPPE (Dynein, axonemal, light intermediate chain 1 n=4 Tax=Amphiprion TaxID=80969 RepID=A0A3P8S7N4_AMPPE) HSP 1 Score: 113 bits (282), Expect = 1.830e-27 Identity = 64/169 (37.87%), Postives = 90/169 (53.25%), Query Frame = 1 Query: 49 PSSPILKYEYPVLARPRDVFDLNM------GHDSLPQYISLCKTTNRRKEEFGGAVRTRRSPKADNTTFLKAIIPNREWTDEGGEWVQTVSNAEWTRADLEALKGKVDATLATCQARPRAICAVREQIFSELFDEIVREVTIECPERGLLLLRLRDEARMNLETYTEIY 537 P +LKYE PVL R + D + DS P ++ + + K +N L I+P REWT+ WVQ VS+A TR D+ L+ ++D L QAR IC VR +++S+ FDE++R+VTI C ERGLLLLR+RDE +M + Y +Y Sbjct: 4 PDDSLLKYENPVLVRKKSPKDRPLKVSPQQSADSAPVPXXXXXXSD-----------SSEAIKQENEEILNCILPPREWTEGSQHWVQQVSSAPCTRTDVIHLEERLDTKLQQRQARETGICPVRRELYSQCFDELIRQVTINCAERGLLLLRVRDEIQMTIAAYQTLY 161
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Match: A0A7S1CN75_9STRA (Hypothetical protein (Fragment) n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CN75_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.840e-27 Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 1 Query: 124 HDSLPQYIS--LCKTTNRRKEEFGGAVRTRRSPKADNTTFLKAIIPNREWTDEGGEWVQTVSNAEWTRADLEALKGKVDATLATCQARPRAICAVREQIFSELFDEIVREVTIECPERGLLLLRLRDEARMNLETYTEIY 537 H SL +Y + L TT + ++ G L +I+P REWT EG WVQ VS+ TR D+ L+ ++D L T QAR IC +RE+++++ FDE++R+VTI C ERGLLLLR+RDE RM + Y +Y Sbjct: 12 HQSLVKYDNPVLVSTTKSKGKKKGKLPPVDNQQLTQTEDILNSILPPREWTAEGQLWVQYVSSTPATRLDVINLQEQLDHKLQTRQARETGICPIREELYAQCFDELIRQVTINCAERGLLLLRVRDEIRMTIAAYQTLY 151 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10040.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10040.102.1 >prot_P-canaliculata_contig10040.102.1 ID=prot_P-canaliculata_contig10040.102.1|Name=mRNA_P-canaliculata_contig10040.102.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=179bp AKFADDHARPSSTALRPSSPILKYEYPVLARPRDVFDLNMGHDSLPQYISback to top mRNA from alignment at P-canaliculata_contig10040:9256..10374- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10040.102.1 ID=mRNA_P-canaliculata_contig10040.102.1|Name=mRNA_P-canaliculata_contig10040.102.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1119bp|location=Sequence derived from alignment at P-canaliculata_contig10040:9256..10374- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10040:9256..10374- >mRNA_P-canaliculata_contig10040.102.1 ID=mRNA_P-canaliculata_contig10040.102.1|Name=mRNA_P-canaliculata_contig10040.102.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at P-canaliculata_contig10040:9256..10374- (Pelvetia canaliculata dioecious)back to top |