mRNA_P-canaliculata_contig100361.96.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Match: A0A5B1BFY9_9FLAO (Leucine-rich repeat domain-containing protein n=1 Tax=Aquimarina sp. RZ0 TaxID=2607730 RepID=A0A5B1BFY9_9FLAO) HSP 1 Score: 78.6 bits (192), Expect = 7.110e-15 Identity = 102/143 (71.33%), Postives = 116/143 (81.12%), Query Frame = 1 Query: 4 LSNPRSYELLGELPELYSLWIDHNDLKSLPVTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAEDFHTKKYPLKGLILDNNVLSPTEIKYAKYIFKDFFMLSFEQKE 432 L + ++YE L +LP LYSLWIDHN+LK LP T+GA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + + T+KYPL GL+LDNN ++ EI K IFK FF+LSFEQK+ Sbjct: 106 LQHKKNYEYLSKLPLLYSLWIDHNNLKELPETIGALSQIRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPNVYETEKYPLAGLLLDNNPINDIEINRVKNIFKGFFLLSFEQKK 248
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Match: UPI001357E40B (hypothetical protein n=1 Tax=Aquimarina sp. AU474 TaxID=2108529 RepID=UPI001357E40B) HSP 1 Score: 78.2 bits (191), Expect = 2.090e-14 Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 1 Query: 1 SLSNPRSYELLGELPELYSLWIDHNDLKSLPVTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAEDFHTKKYPLKGLILDNNVLSPTEIKYAKYIFKDFFMLSFEQK 429 +L+ ++YE++ +LP LYSLWIDHN+L +LP ++G XXXXXXXXXXXXXXXX + +D+HT+KYPL GLILDNN LS TE K +FK FF+LSFEQK Sbjct: 171 NLATNQNYEIISKLPNLYSLWIDHNELVTLPKSIGKISXXXXXXXXXXXXXXXXLEMNSMKTWVIHAGYNSFKELPAVFTKMPSLLMVHINNNNIE-TIPKDYHTEKYPLAGLILDNNPLSETEKNNIKELFKGFFLLSFEQK 312
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Match: UPI001C580898 (hypothetical protein n=1 Tax=Aquimarina litoralis TaxID=584605 RepID=UPI001C580898) HSP 1 Score: 72.4 bits (176), Expect = 2.760e-12 Identity = 107/143 (74.83%), Postives = 120/143 (83.92%), Query Frame = 1 Query: 1 SLSNPRSYELLGELPELYSLWIDHNDLKSLPVTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAEDFHTKKYPLKGLILDNNVLSPTEIKYAKYIFKDFFMLSFEQK 429 S+++ +Y LG LP+LYSLWIDHN+LK++P T+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T+KY L GL+LDNN LS EI+ AK IFK FF+LSFEQK Sbjct: 170 SITDSNTYIFLGRLPKLYSLWIDHNELKTIPKTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETEKYALAGLLLDNNPLSNKEIERAKRIFKGFFLLSFEQK 312
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Match: A0A554VRY7_9FLAO (Uncharacterized protein n=2 Tax=Aquimarina TaxID=290174 RepID=A0A554VRY7_9FLAO) HSP 1 Score: 71.6 bits (174), Expect = 5.220e-12 Identity = 104/143 (72.73%), Postives = 112/143 (78.32%), Query Frame = 1 Query: 4 LSNPRSYELLGELPELYSLWIDHNDLKSLPVTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAEDFHTKKYPLKGLILDNNVLSPTEIKYAKYIFKDFFMLSFEQKE 432 LS +Y LLGELP LYSLWIDHN+L LP T+GA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KYPL GLILDNN L +E + K +FK FF+LSFEQ + Sbjct: 172 LSEKHNYTLLGELPNLYSLWIDHNNLDQLPETIGALDQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPLAGLILDNNPLLDSEKEKGKKLFKGFFLLSFEQNQ 314
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Match: UPI000465AB7C (leucine-rich repeat domain-containing protein n=1 Tax=Aquimarina macrocephali TaxID=666563 RepID=UPI000465AB7C) HSP 1 Score: 71.6 bits (174), Expect = 5.260e-12 Identity = 103/143 (72.03%), Postives = 113/143 (79.02%), Query Frame = 1 Query: 4 LSNPRSYELLGELPELYSLWIDHNDLKSLPVTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAEDFHTKKYPLKGLILDNNVLSPTEIKYAKYIFKDFFMLSFEQKE 432 L SY LG LP LYSLW+DHNDL LPVT+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T+KY L GLILDNN ++ TE + A+ +FK FF+LSFEQK+ Sbjct: 172 LKGKESYVHLGALPRLYSLWLDHNDLDELPVTIGLLNQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQKYTLSGLILDNNPINKTEKRKAQKLFKGFFLLSFEQKK 314
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Match: A0A3B7BZK1_9FLAO (Leucine-rich repeat domain-containing protein n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A3B7BZK1_9FLAO) HSP 1 Score: 71.6 bits (174), Expect = 5.550e-12 Identity = 101/137 (73.72%), Postives = 108/137 (78.83%), Query Frame = 1 Query: 19 SYELLGELPELYSLWIDHNDLKSLPVTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAEDFHTKKYPLKGLILDNNVLSPTEIKYAKYIFKDFFMLSFEQK 429 SY LG+LP+LYSLWIDHN+LK LP T+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T+KYPL GLILDNN LS EI AK FK FF+LSF+QK Sbjct: 184 SYSHLGKLPDLYSLWIDHNNLKELPNTISKLNQIRFFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETEKYPLAGLILDNNPLSQEEIVKAKETFKGFFLLSFQQK 320
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Match: A0A504JE51_9FLAO (Leucine-rich repeat domain-containing protein n=1 Tax=Aquimarina algicola TaxID=2589995 RepID=A0A504JE51_9FLAO) HSP 1 Score: 69.7 bits (169), Expect = 2.430e-11 Identity = 93/142 (65.49%), Postives = 103/142 (72.54%), Query Frame = 1 Query: 4 LSNPRSYELLGELPELYSLWIDHNDLKSLPVTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAEDFHTKKYPLKGLILDNNVLSPTEIKYAKYIFKDFFMLSFEQK 429 + N +SYE LG LP+LYS+WIDHN+ LP T+ XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXX + TKKYPL GLILD N L TE K A+ +FK FF+LSFEQK Sbjct: 164 IHNEKSYEYLGTLPKLYSVWIDHNEFDELPKTIXXXXXXXXXXXXXXXXXXXXXEMSQLKTWVIHAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-YETKKYPLAGLILDGNPLPSTEKKKAQKLFKSFFLLSFEQK 304
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Match: UPI00191E6A74 (hypothetical protein n=1 Tax=Aquimarina mytili TaxID=874423 RepID=UPI00191E6A74) HSP 1 Score: 68.9 bits (167), Expect = 4.900e-11 Identity = 101/137 (73.72%), Postives = 110/137 (80.29%), Query Frame = 1 Query: 19 SYELLGELPELYSLWIDHNDLKSLPVTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAEDFHTKKYPLKGLILDNNVLSPTEIKYAKYIFKDFFMLSFEQK 429 SY LLG+LP+LYSLWID+N+L+ LP T+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + KYPL GLILDNN +S E AK IFK FF+LSFEQK Sbjct: 177 SYTLLGQLPKLYSLWIDNNNLEELPETIGHLRQLRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAKYPLAGLILDNNPISEKERIKAKKIFKGFFLLSFEQK 313
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Match: A0A3A9VG52_9FLAO (Uncharacterized protein n=1 Tax=Aquimarina sp. BL5 TaxID=1714860 RepID=A0A3A9VG52_9FLAO) HSP 1 Score: 65.1 bits (157), Expect = 1.190e-9 Identity = 105/143 (73.43%), Postives = 115/143 (80.42%), Query Frame = 1 Query: 1 SLSNPRSYELLGELPELYSLWIDHNDLKSLPVTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAEDFHTKKYPLKGLILDNNVLSPTEIKYAKYIFKDFFMLSFEQK 429 ++ + +SY LG+LP+LYSLWIDHN+LK LP T+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Y L GLILDNN L TEI AK IF FF+LSF+QK Sbjct: 169 TIEDEKSYSYLGKLPKLYSLWIDHNNLKELPSTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYALAGLILDNNPLPETEILRAKKIFNGFFLLSFKQK 311
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Match: A0A1M6AUY8_9FLAO (Uncharacterized protein n=1 Tax=Aquimarina spongiae TaxID=570521 RepID=A0A1M6AUY8_9FLAO) HSP 1 Score: 60.5 bits (145), Expect = 5.330e-8 Identity = 99/142 (69.72%), Postives = 115/142 (80.99%), Query Frame = 1 Query: 4 LSNPRSYELLGELPELYSLWIDHNDLKSLPVTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAEDFHTKKYPLKGLILDNNVLSPTEIKYAKYIFKDFFMLSFEQK 429 L +++E L +LP+LYSLW+DHN++K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + T+KYPL GL+LDNN +S E + A+ +FK FF+LSFEQK Sbjct: 174 LEGTQNFEFLAKLPKLYSLWLDHNEIKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSTEKYPLAGLLLDNNPISGVEKEKAQELFKGFFLLSFEQK 315 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100361.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100361.96.1 >prot_P-canaliculata_contig100361.96.1 ID=prot_P-canaliculata_contig100361.96.1|Name=mRNA_P-canaliculata_contig100361.96.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=145bp SLSNPRSYELLGELPELYSLWIDHNDLKSLPVTLGAISQIRFLYIEHNGLback to top mRNA from alignment at P-canaliculata_contig100361:595..1029- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100361.96.1 ID=mRNA_P-canaliculata_contig100361.96.1|Name=mRNA_P-canaliculata_contig100361.96.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=435bp|location=Sequence derived from alignment at P-canaliculata_contig100361:595..1029- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100361:595..1029- >mRNA_P-canaliculata_contig100361.96.1 ID=mRNA_P-canaliculata_contig100361.96.1|Name=mRNA_P-canaliculata_contig100361.96.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at P-canaliculata_contig100361:595..1029- (Pelvetia canaliculata dioecious)back to top |