mRNA_P-canaliculata_contig100356.94.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Match: UPI001675FE25 (PQQ-dependent sugar dehydrogenase n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI001675FE25) HSP 1 Score: 133 bits (335), Expect = 1.140e-35 Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = 1 Query: 1 WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDLLSDLSGRVRDVRIARDGAVLVLIEG----GEGKL-------LRVTP 258
W PSIAPSGLAIYRG+MFP W+GDALIGGLASRDLRRV +E G SVGEEDLLSDL+GRVRDVR+A DGAVL+L+E G+GKL LR+TP
Sbjct: 300 WVPSIAPSGLAIYRGDMFPDWNGDALIGGLASRDLRRVDLENGVSVGEEDLLSDLNGRVRDVRVASDGAVLILLESRDVDGDGKLDANSGQLLRITP 396
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Match: UPI00040A0321 (PQQ-dependent sugar dehydrogenase n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00040A0321) HSP 1 Score: 122 bits (307), Expect = 8.970e-32 Identity = 62/87 (71.26%), Postives = 72/87 (82.76%), Query Frame = 1 Query: 1 WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDLLSDLSGRVRDVRIARDGAVLVLIEGGE-GKLLRVTP 258
W PSIAPSGLAIYRG+MFP+W+GDALIGGL S+DLRR+ +E G S+GE LLSDL RVRDVRI + GA+LVL + E GKLLRVTP
Sbjct: 282 WVPSIAPSGLAIYRGDMFPKWNGDALIGGLVSKDLRRIDLENGASLGETSLLSDLGERVRDVRIDQSGAILVLTDDPENGKLLRVTP 368
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Match: A0A420WEL2_9PROT (Glucose/arabinose dehydrogenase n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WEL2_9PROT) HSP 1 Score: 120 bits (302), Expect = 5.430e-31 Identity = 60/86 (69.77%), Postives = 74/86 (86.05%), Query Frame = 1 Query: 1 WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDLLSDLSGRVRDVRIARDGAVLVLIEGGE-GKLLRVT 255
W PSIAPSGLAIYRG+MFP+W GDA+IGGLASRDLR V ++GG++V E DLLSDL R+RDVRIA+DG++LVL + E G+LLRV+
Sbjct: 289 WVPSIAPSGLAIYRGDMFPEWQGDAIIGGLASRDLRLVNLKGGQAVNEIDLLSDLDKRIRDVRIAKDGSLLVLTDDDENGQLLRVS 374
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Match: A0A2G2MS10_9PROT (Glucose dehydrogenase n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2MS10_9PROT) HSP 1 Score: 115 bits (289), Expect = 4.960e-29 Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 1 Query: 1 WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDLLSDLSGRVRDVRIARDGAVLVLIEGGE-GKLLRVTP 258
WTPSIAPSGL IYRG MFP W+GDA +GGL SRDLRRV +E G+ VGE LL+DL+ R+RDVR A DG++LV+ + GKLLR+TP
Sbjct: 299 WTPSIAPSGLTIYRGAMFPDWNGDAFVGGLKSRDLRRVDLEDGKFVGEYSLLADLNLRIRDVRTAPDGSILVVTDANPTGKLLRITP 385
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Match: A0A1Q2M3T1_9GAMM (Glucose dehydrogenase n=7 Tax=Microbulbifer agarilyticus TaxID=260552 RepID=A0A1Q2M3T1_9GAMM) HSP 1 Score: 114 bits (284), Expect = 2.070e-28 Identity = 49/86 (56.98%), Postives = 69/86 (80.23%), Query Frame = 1 Query: 1 WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDLLSDLSGRVRDVRIARDGAVLVLIEGGEGKLLRVTP 258
WTPSIAP+GLAIYRGE+FPQWDGD L+ LA R LR V +EGG+ + +++L++DL R+RDVR+ +DGA+ +L + +GKLL++ P
Sbjct: 283 WTPSIAPAGLAIYRGELFPQWDGDLLVAALAGRHLRLVEMEGGKPIAQQELIADLEERIRDVRVGQDGAIYLLTDSDQGKLLKLQP 368
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Match: A0A7Y1SND6_9PROT (PQQ-dependent sugar dehydrogenase n=2 Tax=Bacteria TaxID=2 RepID=A0A7Y1SND6_9PROT) HSP 1 Score: 113 bits (282), Expect = 4.000e-28 Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 1 Query: 1 WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDLLSDLSGRVRDVRIARDGAVLVLIEGGE-GKLLRVTP 258
W PSIAPSG+ IYRG MFP W+GDALIGGL SRD+RR+ +E +SVGEE L + L R+RDVR A DG++L++ + E GKLLR+TP
Sbjct: 280 WVPSIAPSGMTIYRGNMFPDWNGDALIGGLMSRDVRRIDLENSKSVGEEALFTGLDARIRDVRAAPDGSILLVTDDPENGKLLRITP 366
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Match: A0A4Q3NR37_9BURK (PQQ-dependent sugar dehydrogenase (Fragment) n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q3NR37_9BURK) HSP 1 Score: 104 bits (259), Expect = 2.510e-26 Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 1 Query: 1 WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDLLSDLSGRVRDVRIARDGAVLVLIEGGEGKLLRVTP 258
WTPSIAP+GLA+Y G++FPQW GD + L R LRRV+ E G+ V +E +L+DL+ R+RDV++A DGA+ VL +G + KLLR+ P
Sbjct: 96 WTPSIAPAGLAVYAGDLFPQWQGDLFVPALKERSLRRVVREQGKIVRQERMLTDLNERIRDVKVAPDGALYVLTDGRDAKLLRIVP 181
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Match: A0A2G2QZE9_9PROT (Glucose dehydrogenase n=3 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2QZE9_9PROT) HSP 1 Score: 108 bits (269), Expect = 3.230e-26 Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 1 Query: 1 WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDLLSDLSGRVRDVRIARDGAVLVLIEGG-EGKLLRVTP 258
W PSIAPSGL IYRG +F WDGDAL+GGL SRDLRRV +E G+ V E LL LS R+RDVR A DG++LVL + GKLLR+TP
Sbjct: 284 WVPSIAPSGLTIYRGTLFLGWDGDALVGGLKSRDLRRVDLEDGKFVREYILLEGLSARIRDVRTAPDGSILVLTDDATNGKLLRITP 370
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Match: A0A2D4WB55_9GAMM (GSDH domain-containing protein n=1 Tax=Pseudomonadales bacterium TaxID=1891229 RepID=A0A2D4WB55_9GAMM) HSP 1 Score: 102 bits (254), Expect = 7.840e-26 Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1 Query: 1 WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDLLSDLSGRVRDVRIARDGAVLVLIEGGEGKLLRVTP 258
WTPSIAPSG+ +YRGE+FPQW G+ L+ LA R++RRV+++G V +E L +L R RDVR DGAV +L + G +LRVTP
Sbjct: 73 WTPSIAPSGMTLYRGELFPQWQGNLLVSALAGREVRRVVLDGTEVVEQESLFKELGARFRDVRTGPDGAVYLLTDSANGSVLRVTP 158
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Match: UPI00036D9187 (PQQ-dependent sugar dehydrogenase n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00036D9187) HSP 1 Score: 105 bits (263), Expect = 2.770e-25 Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1 Query: 1 WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDLLSDLSGRVRDVRIARDGAVLVLIEG-GEGKLLRVTP 258
W PSIAPSG A+ RG+MF W GD L+GGLAS+DLRRV ++ G+ V E LL D+S R+RDVR+ DGA+ VL + +GKL+R+TP
Sbjct: 296 WKPSIAPSGFALIRGDMFADWSGDLLVGGLASKDLRRVHMDSGKPVSETILLGDMSARIRDVRLGPDGAIYVLTDAPDDGKLIRITP 382 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100356.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100356.94.1 >prot_P-canaliculata_contig100356.94.1 ID=prot_P-canaliculata_contig100356.94.1|Name=mRNA_P-canaliculata_contig100356.94.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=87bp WTPSIAPSGLAIYRGEMFPQWDGDALIGGLASRDLRRVLIEGGRSVGEEDback to top mRNA from alignment at P-canaliculata_contig100356:208..468+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100356.94.1 ID=mRNA_P-canaliculata_contig100356.94.1|Name=mRNA_P-canaliculata_contig100356.94.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at P-canaliculata_contig100356:208..468+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100356:208..468+ >mRNA_P-canaliculata_contig100356.94.1 ID=mRNA_P-canaliculata_contig100356.94.1|Name=mRNA_P-canaliculata_contig100356.94.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at P-canaliculata_contig100356:208..468+ (Pelvetia canaliculata dioecious)back to top |