Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | EsV-1-7 domain protein |
| Ec32 ortholog | Ec-07_000160.1 |
| Exons | 3 |
| Model size | 387 |
| Cds size | 387 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815576.7842727-CDS-P-canaliculata_contig10034:7909..8080 | 1622815576.7842727-CDS-P-canaliculata_contig10034:7909..8080 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10034 7910..8080 - |
| 1693494146.6724982-CDS-P-canaliculata_contig10034:7909..8080 | 1693494146.6724982-CDS-P-canaliculata_contig10034:7909..8080 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10034 7910..8080 - |
| 1622815576.8050337-CDS-P-canaliculata_contig10034:10100..10208 | 1622815576.8050337-CDS-P-canaliculata_contig10034:10100..10208 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10034 10101..10208 - |
| 1693494146.6899395-CDS-P-canaliculata_contig10034:10100..10208 | 1693494146.6899395-CDS-P-canaliculata_contig10034:10100..10208 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10034 10101..10208 - |
| 1622815576.8178182-CDS-P-canaliculata_contig10034:11227..11335 | 1622815576.8178182-CDS-P-canaliculata_contig10034:11227..11335 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10034 11228..11335 - |
| 1693494146.7025642-CDS-P-canaliculata_contig10034:11227..11335 | 1693494146.7025642-CDS-P-canaliculata_contig10034:11227..11335 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10034 11228..11335 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10034.92.1 >prot_P-canaliculata_contig10034.92.1 ID=prot_P-canaliculata_contig10034.92.1|Name=mRNA_P-canaliculata_contig10034.92.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=129bp
VSRKCQVEGGGCNRQPVYGWPGERATRCGTHKLQRTLTELATGNAEVEKM
HDVRGKRCQAEGCIRQPGFGDPLKDRGSVRCNEHKLPGMTNVRKRRAMER
LTKVTNLNAPYPQQHRNHSQAEILHSQRQ back to topmRNA from alignment at P-canaliculata_contig10034:7910..11335- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig10034.92.1 ID=mRNA_P-canaliculata_contig10034.92.1|Name=mRNA_P-canaliculata_contig10034.92.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3426bp|location=Sequence derived from alignment at P-canaliculata_contig10034:7910..11335- (Pelvetia canaliculata dioecious)
GTCAGTCGGAAGTGCCAGGTCGAAGGGGGCGGGTGTAATCGTCAACCTGT
CTACGGCTGGCCAGGGGAGCGTGCCACGCGATGCGGCACCCACAAGCTAC
AACGTACGGTGAGAGCTTTTTTTTTCTTTTTCTGTAGTACTAGTATATAC
ACCTTGTACACTTATGCCCGGTCGCTTTTGTCATCGAAAAAAACATACCG
GTACATACAGCAGAGGATATACTCTACTATGTCGGTGCAGTTCTTGTCGG
GGGAGGCGGGGACTTTGAGGCATGTGGTACTGTATACAGTACTCTAGTAT
CAACTCTTGACATGTGGTAGTGTATACAGTACTGTAGTAACAACTCTTGA
CATGTGGTAGTGTATACAGTATTTATGTCTGCATGGTCAGCACATTGAAC
AGAGTATGTATCAACCGGGTGTGGTTGCCAATCCTGCTTGCGGTCAGCTT
AACAGGAAAAATATATTTCCCCTCTCCCCGTTCGCGCCTGAGAATTTGGT
CAGTTAAGTAAACAGTAGAGTAGGCCGTATAGTTATACAGTAGTATAGCT
ATAATGCACAGTATAGCAACGATAATGCCTTCAGGGGCATCGCTTTCTGG
AGGGGACGATAAAGGCGTGGAGAGATTCTTCCTAAATTCCTCGTCTCTCT
ACCGATCGAAATAAGGGGCAAGCTCCATTGGTAGCTCCAAAGATTCTTCT
CATGTCCCCGCTACGAATCGAGTGCCACATCCTTTCTCCTCTTTTCTCCT
TACAGAATTGATGCAAGGACGAATACTAATTTAATTTTAACGTGTTAAAA
TAGCGTCGCAGGCAGCGCTAGATAAATGCGTTGAAAGCGGCGTCCACACA
TTTACCTGATAATGGCCATGTTTTGCAGTTTCGTAAGATGTCTCTTCCAT
TTCTTGTGTTGTTAGGACTTGCTTGGCGCTGTCTTGAACCCTACTTAAAG
CCTGACCGAATCCCAACAGCCGACCCGAGTCAAAACTACTAACCGGATGC
AAAATACCGAACGGAATATCAAGTACCCGACCAAGTTATTGAAACCGGTT
CAAACAACAGGAAACCTTACCAAACCTGAAAGCCGAACCGAAAACCAACT
CGATCGCAAACGGAATTGGTCCCATAGTTGACAGAGCTGGCTACAGGGAA
CGCCGAAGTGGAGAAAATGCACGATGTCCGAGGAAAGCGTTGCCAAGCGG
AAGGTTGCATTCGACAGCCTGGCTTTGGGGATCCGGTAAGCCCCATTGCA
GCTATGGCGTGCAAGTAATCGTTTGTGCACTCGTCTTTCGTCTTGGCACT
TTGAACCTGCTGTGCTATTTAATACTGCTGAGAGCTGAAGGTCCTTCTCG
GTCCTTTGTCGTTTTTGTGGCGTTTGAAGGTGCAGGTGCGCTGGGCTTGT
TGTAAGCTGCCTTCCTTGTGACGTCTGACGTAGAAAACATCTTATCTCAA
ACGAGAATGGGAGGATGGCGTGGGTCTTTTAGTCGTTGTATTGTTTTGCT
TTGTTCGCTTGTTTGTTACTGGTAGTCATCGAGTACAGCGCCCCGTAGTG
TGTCCTTCATGTTTTCCCCGTTTTTTTTTCAAGTTTTTTTGTCTCTCTCC
TTCTGCCCCCATAGGTTAGTCTAGTATTAATACTACTACTATTAATATAC
CAACACCCGTACCAACACCGACGCCAATAGTGTACTTCACGTCCAGTCAC
AGCCCGGAAATATAACGTAGCCAATAGTGTACTTCACATTACACCAATAC
CACCTGGGGATGTGTTGGTCGTGCCCACCCCCAATTTACCTGAAATTGTT
ACTGCACCGACATTCACAGATAGCCACCCGTAGCTCTATAGTATTCGGTA
AAGTTGTATTTGTACCTAGTATCTTTGATATCCAGTCCCGCGTACGTGAG
ACCGTCGCCTCTAGATACGCCACGCTTGGAGAAAGTTTTTCAATCTCGTT
GTTAGGGATGTAGGATTAAGCGAGTTTGCATCTTGACAGAGGTAGCTGGA
GCGTTACCTCTTTGTCTTCGTCATACTAATAATATACAGGGTACGTAGCT
CTAGTGCTCTAGTGCTCTAGTGCTCTATGCTGTATGCCGATATTTTAAAC
ATGCTCACTTCATACCGAAGTGGGTGTGGGAAAGTAGAGTCGCACATTAA
TTGGTGCATGGCGATGCAAAGACAGCACCCTGAGGACTACCGGCCCTCTG
CCGGCGGACTCTCGGCAGTGAACACCATCGGTACACAGTTGCGCGACCCG
ATGAACTCGGGATTGAGCCGATGGGATATGGCGGTTTAAATAAAGAAATG
GCCGCCGCCGCGGAAATCGGGAGGAACCCCGTGAGTAAGCACCAGATTGA
GCCTGAGTATGGAGAACGGGCAGGCTGACGCGGGACGGTACGGCCGAAGT
TGTCTCGCGAGACTAAATTCTTAGACTCGAACGGGGACAGAAAGATTCAT
TTTCCCTATTCAGCTGACCATGAGCTGGATTGGCAGCCTTACCAGGTCGA
TCCGTACTCTGCTACATATGATGACCATATATGCTGTTTAATGTATAGAT
TGGGGAGGATTTCTCCCACAAGGCATTTAATACTCTATAGTTTACTGTAT
TCGCGGGCCATTAGGGTACTTTTTGATATGGTGCTCTAAAATACAAGGGT
CAAGTGAAATAGCCTAGAGAAACCCGCCCAGCAAGAGAGAAAATATTATA
TTGCCTTTCCTTTTATCCCTTTCGCGTCTTGCTTTTCGTTTGTACAGACT
GCAACAAGTCACTAATTTTGGAAATGTGTGGGTTAGTATACGTATTGATG
TGTTACAATCGTCCCACCAACTATCCGCAACCGTTTTATAAAGTTTCATG
GTGTGAACGTTGAGGTCATAAAATAGTCTACCAAAGGATACTGGCACGGT
ACAGTATCATCGTTACATAGCCATCAGATTCTTGCCTCTATCTGTAGGAA
TCAGCGTTGATAAGGAGTACGTACGGTATTTGTATATGACTACCCTTTTT
TGAGAAAAAATATTTTTGTTATAGCTGATCACAGTAGAACGTCTGGCTAT
TTTAAGCTTGGGTTTGACGACGAAGACTATGTTACCGCTTACCGCTTTCA
GCGTTGGACATGGTGCCTTTTTTTCTACTGGCAATGTTTTAGACCACCCC
TCCCCTCCATTTCACCCTCTCTTTTCACTGCCTCGCTGTGCTCTTGTGTA
CTGTTCTATATTGCCCTGTACTTCACTGACTGTCGTACTTGATACAATTA
TGCAGCTGAAGGACAGGGGGTCGGTGAGGTGTAACGAGCACAAGCTACCG
GGGATGACCAACGTTCGAAAGCGCCGCGCCATGGAACGCCTCACCAAGGT
TACTAACCTCAACGCTCCCTACCCTCAGCAGCATCGCAACCACTCCCAGG
CGGAGATCCTCCATAGCCAGCGCCAG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig10034:7910..11335- >mRNA_P-canaliculata_contig10034.92.1 ID=mRNA_P-canaliculata_contig10034.92.1|Name=mRNA_P-canaliculata_contig10034.92.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at P-canaliculata_contig10034:7910..11335- (Pelvetia canaliculata dioecious)
GTCAGTCGGAAGTGCCAGGTCGAAGGGGGCGGGTGTAATCGTCAACCTGT
CTACGGCTGGCCAGGGGAGCGTGCCACGCGATGCGGCACCCACAAGCTAC
AACGTACGGTCAGTCGGAAGTGCCAGGTCGAAGGGGGCGGGTGTAATCGT
CAACCTGTCTACGGCTGGCCAGGGGAGCGTGCCACGCGATGCGGCACCCA
CAAGCTACAACGTACGTTGACAGAGCTGGCTACAGGGAACGCCGAAGTGG
AGAAAATGCACGATGTCCGAGGAAAGCGTTGCCAAGCGGAAGGTTGCATT
CGACAGCCTGGCTTTGGGGATCCGTTGACAGAGCTGGCTACAGGGAACGC
CGAAGTGGAGAAAATGCACGATGTCCGAGGAAAGCGTTGCCAAGCGGAAG
GTTGCATTCGACAGCCTGGCTTTGGGGATCCGCTGAAGGACAGGGGGTCG
GTGAGGTGTAACGAGCACAAGCTACCGGGGATGACCAACGTTCGAAAGCG
CCGCGCCATGGAACGCCTCACCAAGGTTACTAACCTCAACGCTCCCTACC
CTCAGCAGCATCGCAACCACTCCCAGGCGGAGATCCTCCATAGCCAGCGC
CAGCTGAAGGACAGGGGGTCGGTGAGGTGTAACGAGCACAAGCTACCGGG
GATGACCAACGTTCGAAAGCGCCGCGCCATGGAACGCCTCACCAAGGTTA
CTAACCTCAACGCTCCCTACCCTCAGCAGCATCGCAACCACTCCCAGGCG
GAGATCCTCCATAGCCAGCGCCAG back to top
|