mRNA_P-canaliculata_contig100272.80.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Match: UPI00167665F4 (response regulator n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167665F4) HSP 1 Score: 354 bits (909), Expect = 4.370e-121 Identity = 183/255 (71.76%), Postives = 213/255 (83.53%), Query Frame = 1 Query: 1 MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELPPKIALYRMFLAIWSTTGAQLETNEAVEGSTAVQRVSKLTPASRQAFLLQSLEGLSVKDTAAVMNVTPAEAGDMIKEAEADIEKELRTNVLIIEDEPIIAADIEGLVLELGHTVDSISATHADAVRNAKAKSPGLVLADVHLADGSSGIDAVDDILSQYNVPVIFITAFPERLLTGDKPEPAYLISKPFEPDNVKAAISQALFFH 765 MSLVE Y P++PYLRRFARALTGSQ+ GDTYVR ALEAL AG+AS+D L PK+ L++MFL IW++TG L+ A EG T RV KLTPASRQAFLL ++EG+ +D A +M V A A ++ EAEADIEKELRTNVLIIEDEPIIAADIEG+V +LGHTVD+I+AT +AV+ AKAK PG+VLADV LADGSSGIDAV DIL +Y+VPVIFITAFPERLLTG++PEPAYLISKPF P+NVKAAISQALFFH Sbjct: 1 MSLVEKYAPHIPYLRRFARALTGSQSEGDTYVRAALEALVAGSASLDQNLSPKVGLFQMFLGIWNSTGGTLDDGSAPEGDTPEARVRKLTPASRQAFLLNAVEGIPAQDIAVIMRVEEAAAQSLLDEAEADIEKELRTNVLIIEDEPIIAADIEGIVEDLGHTVDAIAATETEAVKAAKAKKPGIVLADVQLADGSSGIDAVADILKKYDVPVIFITAFPERLLTGERPEPAYLISKPFRPENVKAAISQALFFH 255
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Match: A0A848V2Q5_9PROT (Response regulator n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V2Q5_9PROT) HSP 1 Score: 351 bits (901), Expect = 6.960e-120 Identity = 186/257 (72.37%), Postives = 214/257 (83.27%), Query Frame = 1 Query: 1 MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELPPKIALYRMFLAIWSTTGAQLETNEAVEGSTAVQRVSKLTPASRQAFLLQSLEGLSVKDTAAVMNVTPAEAGDMIKEAEADIEKELRTNVLIIEDEPIIAADIEGLVLELGHTVDSISATHADAVRNAKAKSPGLVLADVHLADGSSGIDAVDDILSQYNVPVIFITAFPERLLTGDKPEPAYLISKPFEPDNVKAAISQALFFHDS 771 MSLVE Y P+LPYLRRF+RALTGSQ+ GD YVR ALEAL AG A ++SEL PK+ALY+MFL IW+ TGA LE ++ + A R+ +LTP SRQAFLL +LEG+SV D A+VM + EA ++ EAEADIE ELRTNVLIIEDEPIIAADIE LV ELGHTVD+I+ATH DAV A+ K PG+VLAD+ LADGSSGIDAV+DIL YNVPVIFITAFPERLLTGDKPEPAYLISKPF+PDNVKAAISQALFFH++ Sbjct: 1 MSLVEKYAPHLPYLRRFSRALTGSQSDGDRYVRVALEALVAGDAELNSELMPKVALYQMFLTIWNATGALLE-DDPGDAELASNRIRRLTPLSRQAFLLNALEGMSVDDIASVMGKSVEEAEALMMEAEADIENELRTNVLIIEDEPIIAADIESLVEELGHTVDAIAATHTDAVAAAEQKKPGIVLADIQLADGSSGIDAVEDILKSYNVPVIFITAFPERLLTGDKPEPAYLISKPFQPDNVKAAISQALFFHNA 256
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Match: UPI0003FD6F41 (response regulator n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003FD6F41) HSP 1 Score: 348 bits (894), Expect = 8.080e-119 Identity = 185/257 (71.98%), Postives = 212/257 (82.49%), Query Frame = 1 Query: 1 MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELPPKIALYRMFLAIWSTTGAQLETNEAVEGSTAVQRVSKLTPASRQAFLLQSLEGLSVKDTAAVMNVTPAEAGDMIKEAEADIEKELRTNVLIIEDEPIIAADIEGLVLELGHTVDSISATHADAVRNAKAKSPGLVLADVHLADGSSGIDAVDDILSQYNVPVIFITAFPERLLTGDKPEPAYLISKPFEPDNVKAAISQALFFHDS 771 MSLVETY P+LPYLRRF+RALTGSQ+ GDTYVRTALEAL AG ++ +L PKIALY+MFL IWSTTGA+LE + E A +RV KL P SRQAFLL +LEG++ D A VMN+ P A ++ EAE+DIEKELRTNVLIIEDEPIIAADIEGLV +LGH+VD+I+ATH DAV K PGL+LADV LADGSSGI+AV++I NVPVIFITAFPERLLTGDKPEPAYLISKPF+P NVKAAISQALFFHD+ Sbjct: 1 MSLVETYAPHLPYLRRFSRALTGSQSEGDTYVRTALEALVAGDIVLEGDLSPKIALYQMFLTIWSTTGAKLEADREDEAVPA-KRVRKLPPTSRQAFLLNALEGMTPADIAKVMNIAPEYADTLLAEAESDIEKELRTNVLIIEDEPIIAADIEGLVEDLGHSVDNIAATHKDAVSAVSEKKPGLILADVQLADGSSGIEAVEEITKTLNVPVIFITAFPERLLTGDKPEPAYLISKPFKPGNVKAAISQALFFHDA 256
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Match: UPI000379715B (response regulator n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI000379715B) HSP 1 Score: 348 bits (892), Expect = 1.690e-118 Identity = 182/255 (71.37%), Postives = 211/255 (82.75%), Query Frame = 1 Query: 1 MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELPPKIALYRMFLAIWSTTGAQLETNEAVEGSTAVQRVSKLTPASRQAFLLQSLEGLSVKDTAAVMNVTPAEAGDMIKEAEADIEKELRTNVLIIEDEPIIAADIEGLVLELGHTVDSISATHADAVRNAKAKSPGLVLADVHLADGSSGIDAVDDILSQYNVPVIFITAFPERLLTGDKPEPAYLISKPFEPDNVKAAISQALFFH 765 MSL+++ P+LPYLRRF+RALTGSQA GD YVR ALEAL AG + ID + PK+ALYRMFL IW T+GA LE + T R+ +LTP SRQAFLL +LEG+S + A VMNV+ +A ++ +AE+DIEKELRTNVLIIEDEPIIAADIE LV ELGHTVDSISATH++AV+NA AK PG+VLAD+ LADGSSGIDAV DIL +Y+VPVIFITAFPERLLTGDKPEPAYLISKPF P+NVKAAISQALFFH Sbjct: 1 MSLLDSLAPHLPYLRRFSRALTGSQAEGDRYVRIALEALVAGNSEIDETIAPKVALYRMFLGIWDTSGAHLEA-DGQNTETTADRIRRLTPRSRQAFLLSALEGMSTGEIAIVMNVSDDDAQALLDDAESDIEKELRTNVLIIEDEPIIAADIEDLVEELGHTVDSISATHSEAVKNASAKKPGIVLADIQLADGSSGIDAVSDILKEYDVPVIFITAFPERLLTGDKPEPAYLISKPFRPENVKAAISQALFFH 254
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Match: A0A8J3CP60_9PROT (Response regulator n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CP60_9PROT) HSP 1 Score: 342 bits (878), Expect = 2.270e-116 Identity = 181/257 (70.43%), Postives = 211/257 (82.10%), Query Frame = 1 Query: 1 MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELPPKIALYRMFLAIWSTTGAQLETNEAVEGSTAVQRVSKLTPASRQAFLLQSLEGLSVKDTAAVMNVTPAEAGDMIKEAEADIEKELRTNVLIIEDEPIIAADIEGLVLELGHTVDSISATHADAVRNAKAKSPGLVLADVHLADGSSGIDAVDDILSQYNVPVIFITAFPERLLTGDKPEPAYLISKPFEPDNVKAAISQALFFHDS 771 MSLVE + P+LPYLRRF+RALTGSQ +GDTYVR ALEAL AG + ++ PK+AL++MFL IW++TGAQLE + EG+TA RV +L P SRQAFLL SLEGLS D A VMNV A ++ +AE++IEKELRTNVLIIEDE IIAADIEGLV +LGHTVD++ AT +AV+ AK K PG+VLADV LADGSSGIDAV DIL+ Y+VPVIFITAFPERLLTGDKPEPAYLISKPF P+NVKAAISQALFFH + Sbjct: 1 MSLVEKFAPHLPYLRRFSRALTGSQTAGDTYVRNALEALVAGDTVLSEDMTPKLALFQMFLGIWNSTGAQLENTPSDEGATASARVRRLAPRSRQAFLLSSLEGLSNDDIAKVMNVDLDAATALLADAESEIEKELRTNVLIIEDESIIAADIEGLVQDLGHTVDTVVATRTEAVKAAKIKKPGIVLADVQLADGSSGIDAVADILADYDVPVIFITAFPERLLTGDKPEPAYLISKPFRPENVKAAISQALFFHSA 257
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Match: A0A420WEK5_9PROT (Response regulator receiver domain-containing protein n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WEK5_9PROT) HSP 1 Score: 338 bits (866), Expect = 1.520e-114 Identity = 175/256 (68.36%), Postives = 214/256 (83.59%), Query Frame = 1 Query: 1 MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELPPKIALYRMFLAIWSTTGAQLETNEAVEGSTAVQRVSKLTPASRQAFLLQSLEGLSVKDTAAVMNVTPAEAGDMIKEAEADIEKELRTNVLIIEDEPIIAADIEGLVLELGHTVDSISATHADAVRNAKAKSPGLVLADVHLADGSSGIDAVDDILSQYNVPVIFITAFPERLLTGDKPEPAYLISKPFEPDNVKAAISQALFFHD 768 MSLV+++ P+LPYLRRF+RALTGSQ++GDTYVRTALEAL AG I ++ PK+AL++MFL IW+++G LET+ + + R+ KLTPASRQAFLL +LE L++ + A VM ++ EA ++ EAEADIEKELRTNVLI+EDEPIIAADIEGLV ELGHTVDSI+AT +AV+ A K+PG+VLADV LADGSSGIDAV DIL ++ VP+IFITAFPE+LLTGDKPEPAYLISKPF P+NVKAAISQALFFH+ Sbjct: 1 MSLVQSFAPHLPYLRRFSRALTGSQSAGDTYVRTALEALVAGNVQISADEDPKLALFKMFLGIWNSSGGVLETDGEEKEQSPSARIRKLTPASRQAFLLSALESLNLDEVAYVMGLSKDEAAALLTEAEADIEKELRTNVLIVEDEPIIAADIEGLVEELGHTVDSIAATRTEAVKAAARKTPGIVLADVQLADGSSGIDAVSDILDEHAVPIIFITAFPEKLLTGDKPEPAYLISKPFNPENVKAAISQALFFHN 256
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Match: A0A520XTI4_9ACTN (Response regulator n=2 Tax=Bacteria TaxID=2 RepID=A0A520XTI4_9ACTN) HSP 1 Score: 334 bits (857), Expect = 3.670e-113 Identity = 174/255 (68.24%), Postives = 206/255 (80.78%), Query Frame = 1 Query: 1 MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELPPKIALYRMFLAIWSTTGAQLETNEAVEGSTAVQRVSKLTPASRQAFLLQSLEGLSVKDTAAVMNVTPAEAGDMIKEAEADIEKELRTNVLIIEDEPIIAADIEGLVLELGHTVDSISATHADAVRNAKAKSPGLVLADVHLADGSSGIDAVDDILSQYNVPVIFITAFPERLLTGDKPEPAYLISKPFEPDNVKAAISQALFFH 765 MS +T+ PYLPYLRRF+RALTGSQ +GDTYVRTAL +L +D +L PK+AL+RMFL IW++TGA LE +G +R+ +LTP SRQAFLL +LEG++ + + VM AE ++KEAEADIEKELRTNVLIIEDEPIIAADIEGLV ELGH+VDSI+ATH +AV+ A K PG+VLADV LADGSSGIDAV +IL +VPVIFITAFPERLLTG++PEPAYLISKPF+PDNVKAAISQALFFH Sbjct: 1 MSYADTFAPYLPYLRRFSRALTGSQDTGDTYVRTALISLVEDPTIMDDKLEPKVALFRMFLGIWNSTGALLENKTRPDGDAPAERIRRLTPLSRQAFLLNALEGMTATEISDVMGKPEAEVDALLKEAEADIEKELRTNVLIIEDEPIIAADIEGLVSELGHSVDSIAATHTEAVKAANNKKPGIVLADVQLADGSSGIDAVHEILGGMDVPVIFITAFPERLLTGERPEPAYLISKPFKPDNVKAAISQALFFH 255
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Match: A0A258H4X0_9PROT (Response regulator n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A258H4X0_9PROT) HSP 1 Score: 300 bits (769), Expect = 9.310e-100 Identity = 157/255 (61.57%), Postives = 198/255 (77.65%), Query Frame = 1 Query: 1 MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELPPKIALYRMFLAIWSTTGAQLETNEAVEGSTAVQRVSKLTPASRQAFLLQSLEGLSVKDTAAVMNVTPAEAGDMIKEAEADIEKELRTNVLIIEDEPIIAADIEGLVLELGHTVDSISATHADAVRNAKAKSPGLVLADVHLADGSSGIDAVDDILSQYNVPVIFITAFPERLLTGDKPEPAYLISKPFEPDNVKAAISQALFFH 765 MSLV+ GP+LPYLRR+ARALTG+Q SGD+YV+ AL+ALA G +D +LPP++ALYR+F AIW TGA+LET G T RV ++ P RQAFLL +LEG +V++ A +++ T +I A+ DIE +L T VLIIEDEP+IAADIE LVL+LGH V +++ T +AV KA+ PGLVLAD+ LADGSSGIDAV+DIL ++VPVIFITAFPERLLTG+KPEPA+LI+KPF+P+ VKAAI QALFFH Sbjct: 1 MSLVQKLGPHLPYLRRYARALTGNQKSGDSYVKAALQALAEGTHELD-DLPPRVALYRLFQAIWGATGARLETAPET-GDTVSDRVLRIPPRHRQAFLLTALEGFTVEECAEILDETSESVRQLISRAQRDIEADLATEVLIIEDEPVIAADIEALVLDLGHRVTTVATTRTEAVAAVKARKPGLVLADIQLADGSSGIDAVNDILRGHDVPVIFITAFPERLLTGEKPEPAFLITKPFQPETVKAAIGQALFFH 253
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Match: A0A7L5Z6Y3_9CAUL (Response regulator n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A7L5Z6Y3_9CAUL) HSP 1 Score: 298 bits (762), Expect = 1.190e-98 Identity = 154/255 (60.39%), Postives = 191/255 (74.90%), Query Frame = 1 Query: 1 MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELPPKIALYRMFLAIWSTTGAQLETNEAVEGSTAVQRVSKLTPASRQAFLLQSLEGLSVKDTAAVMNVTPAEAGDMIKEAEADIEKELRTNVLIIEDEPIIAADIEGLVLELGHTVDSISATHADAVRNAKAKSPGLVLADVHLADGSSGIDAVDDILSQYNVPVIFITAFPERLLTGDKPEPAYLISKPFEPDNVKAAISQALFFH 765 MSL+ P+LPY+RR+ARALTG QASGDTYVR LEALAAG + +++ P++ALY +F IWS+TGA +E + V G A R+ K++P SRQAFLL +L G + + A ++ + +I EA+ADI+ EL T+VLIIEDE II+ADIE LV ELGH+V + THA+AV + PGLVLAD+ LADGSSGIDAV DIL NVPVIFITAFPERLLTGD+PEP +LI+KPF+PD VKAAISQALFFH Sbjct: 1 MSLLARLAPHLPYVRRYARALTGDQASGDTYVRVTLEALAAGERQLPADMTPQVALYHVFHTIWSSTGAXMEDPDPVXGQQASDRLLKISPRSRQAFLLTALXGFTPSEAAQILGADMGQVAQLIAEAQADIDAELATDVLIIEDEAIISADIESLVRELGHSVSGTATTHAEAVEAVSRRRPGLVLADIQLADGSSGIDAVXDILKAINVPVIFITAFPERLLTGDRPEPTFLITKPFQPDTVKAAISQALFFH 255
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Match: A0A1R4F2S3_BREDI (DNA-directed RNA polymerase specialized sigma subunit, sigma24-like n=24 Tax=Bacteria TaxID=2 RepID=A0A1R4F2S3_BREDI) HSP 1 Score: 297 bits (760), Expect = 2.400e-98 Identity = 154/257 (59.92%), Postives = 194/257 (75.49%), Query Frame = 1 Query: 1 MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELPPKIALYRMFLAIWSTTGAQLETNEAVEGSTAVQRVSKLTPASRQAFLLQSLEGLSVKDTAAVMNVTPAEAGDMIKEAEADIEKELRTNVLIIEDEPIIAADIEGLVLELGHTVDSISATHADAVRNAKAKSPGLVLADVHLADGSSGIDAVDDILSQYNVPVIFITAFPERLLTGDKPEPAYLISKPFEPDNVKAAISQALFFHDS 771 MSL+ P+LPY+RR+ARALTG Q +GD YVR ALEALAAG + +++ P++ALY +F IWS TGAQLE AVEG A R+ +++P SRQAFLL +LEG + + A ++ V P +I EA++DI+ EL T+VLIIEDE II+ADIE LV ELGH V + TH +AV +PGLVLAD+ LADGSSGIDAV DIL +++VPVIFITAFPERLLTG++PEP +LI+KPF+P+ VKAAISQALFFH S Sbjct: 1 MSLLARLAPHLPYVRRYARALTGDQTTGDNYVRVALEALAAGERQLPTDMTPRVALYHVFHTIWSATGAQLEDGGAVEGDDAAHRLMRISPRSRQAFLLTALEGFTPSEAAQILAVDPRTVERLIAEAQSDIDAELTTDVLIIEDEAIISADIESLVKELGHRVTGTATTHDEAVDAVARHTPGLVLADIQLADGSSGIDAVKDILKRFDVPVIFITAFPERLLTGERPEPTFLITKPFQPETVKAAISQALFFHPS 257 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100272.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100272.80.1 >prot_P-canaliculata_contig100272.80.1 ID=prot_P-canaliculata_contig100272.80.1|Name=mRNA_P-canaliculata_contig100272.80.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=258bp MSLVETYGPYLPYLRRFARALTGSQASGDTYVRTALEALAAGAASIDSELback to top mRNA from alignment at P-canaliculata_contig100272:197..970- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100272.80.1 ID=mRNA_P-canaliculata_contig100272.80.1|Name=mRNA_P-canaliculata_contig100272.80.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at P-canaliculata_contig100272:197..970- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100272:197..970- >mRNA_P-canaliculata_contig100272.80.1 ID=mRNA_P-canaliculata_contig100272.80.1|Name=mRNA_P-canaliculata_contig100272.80.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at P-canaliculata_contig100272:197..970- (Pelvetia canaliculata dioecious)back to top |