mRNA_P-canaliculata_contig10027.79.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Match: A0A6H5JLJ5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLJ5_9PHAE) HSP 1 Score: 333 bits (855), Expect = 6.070e-95 Identity = 172/301 (57.14%), Postives = 211/301 (70.10%), Query Frame = 3 Query: 6 LRRTEKTVLQDWIELDFAKDLDFARSVELGSGSFGTVRTAKWRGVGVAVKQLAATGVQRDAIRALRKDLRLHCSLNHKFLIRLYAASTVKPELCLVMELARGGSLLSYLRDSDGPLEDALQVSFLYDIARGMQFLHSKGILHGDLRSTNVLVCSNDHLKLSDFGLFSTKKKISNLSGRGISVRARWMSPEEIDGNLPSELTDVYSFGVVCFEVATRARPFPGMGSQQVTRAVAVEGKRPQIPKVSSPSANVVHLMKSCWQQKPSQRPEGFTPVVWTLSKVASRVGDPRKPRALETKAESSS 908
LR+ E+T L W+E+D+ KDLDF S LGSG FG VRTAKW G VAVK L G+QRD IR+LRK++RLH SL+ +F+ LYAAST+ P LCLV+ELA GGSL YL + PL ALQ +FLYD+ARGM FLH+KGILH DL+S NVL+ +N LKL DFGL K +S+ S G +WMSPEE+D + +ELTDVYSFGV+CFEVATR PF G QV AV +RPQ+P+ +S S +VV LM+ CW++ P +RPEGF PVV TL+ V SRVGDPR A + SSS
Sbjct: 157 LRQDERTELTGWVEIDYDKDLDFGGSTLLGSGGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELASGGSLQHYLYSTTVPLAHALQTAFLYDVARGMSFLHAKGILHRDLKSANVLMFANSRLKLCDFGLSKVKTDLSSRSTHGAVGTTQWMSPEEMDESPANELTDVYSFGVLCFEVATRTEPFKGKRPAQVIGAVLYRNERPQLPQGASASPDVVPLMEHCWKEDPKERPEGFEPVVVTLANVVSRVGDPRHHGATAMRGSSSS 457
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Match: D7G890_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G890_ECTSI) HSP 1 Score: 321 bits (823), Expect = 1.790e-91 Identity = 169/300 (56.33%), Postives = 206/300 (68.67%), Query Frame = 3 Query: 6 LRRTEKTVLQDWIELDFAKDLDFARSVELGSGSFGTVRTAKWRGVGVAVKQLAATGVQRDAIRALRKDLRLHCSLNHKFLIRLYAASTVKPELCLVMELARGGSLLSYLRDSDGPLEDALQVSFLYDIARGMQFLHSKGILHGDLRSTNVLVCSNDHLKLSDFGLFSTKKKISNLSGRGISVRARWMSPEEIDGNLPSELTDVYSFGVVCFEVATRARPFPGMGSQQVTRAVAVEGKRPQIPKVSSPSANVVHLMKSCWQQKPSQRPEGFTPVVWTLSKVASRVGDPRKPRALETKAESS 905
LR+ E+ L +W E+D+ KDLDF S LGSG FG V TAKW G VAVK+L A + RD +R LRK++R+H +L +++LYAAST+ P LCLV+ELA GSL L S PL ALQ +FLYDIARGM FLH KGILH DL+S NVL+ +N HLKL DFGL K + S+ S RG A+WMSPEE+D + SE TD+YSFGVVCFEV TR PF GM QV +AV + +RPQIP+ +S S +VV LM+ CW+Q P RPEGF PVV TL+ V SR GDPR A+ A SS
Sbjct: 157 LRKDERLELTEWDEIDYDKDLDFKGSSRLGSGGFGEVCTAKWNGSHVAVKRLLAGDLHRDDVRTLRKEIRIHSNLRFDHVVQLYAASTIPPRLCLVVELASRGSLRENLHSSSEPLAHALQTAFLYDIARGMSFLHKKGILHRDLKSANVLMFANGHLKLCDFGLSKIKTESSSRSKRGAVGTAQWMSPEEMDESPASERTDLYSFGVVCFEVITRMEPFKGMNPTQVIKAVVLNERRPQIPEWASGSPDVVPLMEQCWKQDPGHRPEGFGPVVQTLASVVSRNGDPRNHSAVAVDATSS 456
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Match: D8LQ15_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ15_ECTSI) HSP 1 Score: 324 bits (830), Expect = 2.460e-90 Identity = 166/292 (56.85%), Postives = 201/292 (68.84%), Query Frame = 3 Query: 6 LRRTEKTVLQDWIELDFAKDLDFARSVELGSGSFGTVRTAKWRGVGVAVKQLAATGVQRDAIRALRKDLRLHCSLNHKFLIRLYAASTVKPELCLVMELARGGSLLSYLRDSDGPLEDALQVSFLYDIARGMQFLHSKGILHGDLRSTNVLVCSNDHLKLSDFGLFSTKKKISNLSGRGISVRARWMSPEEIDGNLPSELTDVYSFGVVCFEVATRARPFPGMGSQQVTRAVAVEGKRPQIPKVSSPSANVVHLMKSCWQQKPSQRPEGFTPVVWTLSKVASRVGDPRKPRA 881
LR E++ L WIE+D+ +DLDF S LGSG FG VRTAKW G VAVK L A+G+QRD +R LRK++RLH SL+ F+ LYAAST+ P LCLV+ELA GGSL YL + PL ALQ +FLYD+ARGM FLH KGILH DL+S NVL+ +N LKL DFGL K +S+ S RG +WMSPEE+D + +ELTDVYSFGV+CFEV TR PF G V AV +RP IP+ +S S +VV LM+ CW+Q P +RPEGF PVV L+ V SR GDPR A
Sbjct: 157 LRNDERSELTGWIEIDYEQDLDFDGSTLLGSGGFGEVRTAKWNGADVAVKHLLASGIQRDCVRDLRKEIRLHSSLSFDFVAPLYAASTIAPHLCLVVELASGGSLQQYLHSASEPLAHALQTAFLYDVARGMAFLHVKGILHRDLKSANVLMFANGRLKLCDFGLSKVKTDLSSRSTRGAVGTTQWMSPEEMDESPANELTDVYSFGVLCFEVVTRTEPFKGKRPAHVIGAVLYRNERPHIPEEASASPDVVPLMEQCWRQDPVERPEGFGPVVRALASVVSRFGDPRNHNA 448
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Match: A0A6H5JY67_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY67_9PHAE) HSP 1 Score: 322 bits (826), Expect = 5.930e-88 Identity = 165/292 (56.51%), Postives = 203/292 (69.52%), Query Frame = 3 Query: 6 LRRTEKTVLQDWIELDFAKDLDFARSVELGSGSFGTVRTAKWRGVGVAVKQLAATGVQRDAIRALRKDLRLHCSLNHKFLIRLYAASTVKPELCLVMELARGGSLLSYLRDSDGPLEDALQVSFLYDIARGMQFLHSKGILHGDLRSTNVLVCSNDHLKLSDFGLFSTKKKISNLSGRGISVRARWMSPEEIDGNLPSELTDVYSFGVVCFEVATRARPFPGMGSQQVTRAVAVEGKRPQIPKVSSPSANVVHLMKSCWQQKPSQRPEGFTPVVWTLSKVASRVGDPRKPRA 881
LR+ E++ L WIE+D+ KDLDF S LG G FG VRTAKW+G VAVK L A+G+ RD +R LRK++RLH SL+ F+ LYAAST+ P LCLV+ELA GGSL YLR + PL ALQ +FLYD+ARGM FLH KGILH DL+S NVL+ +N LK+ DFGL K +S+ RG +WMSPEE++ + +ELTDVYSFGV+CFEV TR PF G V RAV E +RPQIP+ +S + VV LM+ CW+Q P +RPEGF PVV L+ V SR GDPR A
Sbjct: 157 LRKDERSELAGWIEIDYEKDLDFDGSALLGWGGFGEVRTAKWKGADVAVKHLMASGIHRDTVRDLRKEIRLHSSLSFDFVTPLYAASTIIPHLCLVVELASGGSLQQYLRSASDPLGHALQAAFLYDVARGMTFLHDKGILHRDLKSANVLMFTNGRLKICDFGLSKVKTYLSSRPTRGAVGTTQWMSPEEMNESPANELTDVYSFGVLCFEVVTRTEPFKGRIPAHVIRAVLYENERPQIPEGASAAPEVVPLMEQCWRQDPVERPEGFGPVVRALASVVSRDGDPRNHNA 448
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Match: A0A6H5KGQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ4_9PHAE) HSP 1 Score: 305 bits (780), Expect = 5.340e-86 Identity = 161/286 (56.29%), Postives = 194/286 (67.83%), Query Frame = 3 Query: 12 RTEKTVLQDWIELDFAKDLDFARSVELGSGSFGTVRTAKWRGVGVAVKQLAATGVQRDAIRALRKDLRLHCSLNHKFLIRLYAASTVKPELCLVMELARGGSLLSYLRDSDGPLEDALQVSFLYDIARGMQFLHSKGILHGDLRSTNVLVCSNDHLKLSDFGLFSTKKKISNLSGRGISVRARWMSPEEIDGNLPSELTDVYSFGVVCFEVATRARPFPGMGSQQVTRAVAVEGKRPQIPKVSSPSANVVHLMKSCWQQKPSQRPEGFTPVVWTLSKVASRVGDPR 869
R+E L W E+D+ DLDF S+ LGSGSFG V TAKW G VAVK L RD IRA+RK++R H SL +++LYAAST+ P LC+VME A GSL YL + PL LQ +FL+DIARG+ FLH+KGILH DL+S NVLV +N LKL DFGL ++ S+ S RG WMSPE I+G+ ++LTDVYSFGVVC+EVATR PF GM QV RAVA G RP+IP S S +VV LM+ CW+Q P+QRPEGF PVV L +V RVGDPR
Sbjct: 164 RSELKELSAWEEIDYDNDLDFEGSIRLGSGSFGVVTTAKWNGSDVAVKYLREDD-NRDLIRAIRKEIRTHASLRFDHVVQLYAASTIAPNLCMVMEYASEGSLWQYLHSTRKPLAHPLQTAFLFDIARGLMFLHNKGILHRDLKSANVLVFANRRLKLCDFGLSKVIEESSSRSKRGPVGTTAWMSPEAINGSAATQLTDVYSFGVVCYEVATRMEPFKGMMPVQVMRAVADMGSRPEIPAGPSASPDVVRLMEQCWKQDPAQRPEGFMPVVEELGRVVGRVGDPR 448
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Match: A0A6H5KS20_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS20_9PHAE) HSP 1 Score: 303 bits (776), Expect = 1.630e-83 Identity = 159/286 (55.59%), Postives = 197/286 (68.88%), Query Frame = 3 Query: 12 RTEKTVLQDWIELDFAKDLDFARSVELGSGSFGTVRTAKWRGVGVAVKQLAATGVQRDAIRALRKDLRLHCSLNHKFLIRLYAASTVKPELCLVMELARGGSLLSYLRDSDGPLEDALQVSFLYDIARGMQFLHSKGILHGDLRSTNVLVCSNDHLKLSDFGLFSTKKKISNLSGRGISVRARWMSPEEIDGNLPSELTDVYSFGVVCFEVATRARPFPGMGSQQVTRAVAVEGKRPQIPKVSSPSANVVHLMKSCWQQKPSQRPEGFTPVVWTLSKVASRVGDPR 869
R+E L W+E+DF DLDF S+ LGSGSFG V+TA+W G VAVK L RD IRA+RK++R H SL +++LYAAST+ P LC+VME A GSL +L + PL LQ +FL+DIARG+ FLH+KGILH DL+S NVLV +N LKL DFGL ++ S+ S RG WMSPE I+G+ ++LTDVYSFGVVC+EVATR PF GM QV RAVA G RP+IP +S S +VV LM+ CW+Q P+QRP+GF PVV L +V RVGDPR
Sbjct: 218 RSELKELSAWVEIDFDNDLDFEGSIRLGSGSFGEVKTARWNGSEVAVKHLREDD-NRDLIRAIRKEIRTHASLRFDHVVQLYAASTIAPNLCMVMEYASEGSLWQHLHSTRKPLAHPLQAAFLFDIARGLMFLHNKGILHRDLKSANVLVFANRRLKLCDFGLSKVIEESSSRSKRGPVGTTPWMSPEAINGSAATQLTDVYSFGVVCYEVATRMEPFRGMMPVQVMRAVADMGSRPEIPAGASASPDVVPLMERCWKQDPAQRPDGFMPVVEELGRVVRRVGDPR 502
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Match: D7FHK4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK4_ECTSI) HSP 1 Score: 190 bits (482), Expect = 2.870e-51 Identity = 97/179 (54.19%), Postives = 124/179 (69.27%), Query Frame = 3 Query: 6 LRRTEKTVLQDWIELDFAKDLDFARSVELGSGSFGTVRTAKWRGVGVAVKQLAATGVQRDAIRALRKDLRLHCSLNHKFLIRLYAASTVKPELCLVMELARGGSLLSYLRDSDGPLEDALQVSFLYDIARGMQFLHSKGILHGDLRSTNVLVCSNDHLKLSDFGLFSTKKKISNLSGRG 542
LR E++ L W E+D+ KDLDF S GSG G VRT KW G VAVK+L A G+ RD +RALRK++R+H +L +++LYAAST+ P LCLV+ELA GGSL YLR ++ PL ALQ +FL+DIARGM FL+ KG LH DL+S NVL+ +N LKL DFGL + S+ S +G
Sbjct: 26 LRNDERSELTAWDEIDYDKDLDFEGSTRFGSGGVGEVRTVKWNGSDVAVKRLLADGLDRDDVRALRKEVRIHANLRFDHVVQLYAASTIPPHLCLVVELASGGSLRQYLRSTNEPLAHALQTAFLFDIARGMWFLNKKGTLHRDLKSANVLIFANGRLKLCDFGLSKIMAESSSRSIQG 204
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Match: A0A7S0QUW8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QUW8_9CHLO) HSP 1 Score: 159 bits (403), Expect = 1.040e-39 Identity = 102/273 (37.36%), Postives = 151/273 (55.31%), Query Frame = 3 Query: 45 ELDFAKDLDFARSVELGSGSFGTVRTAKWRGVGVAVKQLAATGVQRDAIRALRKDLRLHCSLNHKFLIRLYAASTVKPELCLVMELARGGSLLSYLRDSDGPLEDALQVSFLYDIARGMQFLHSK--GILHGDLRSTNVLVCSNDHLKLSDFGLFSTKKKISNLSGRGISVRARWMSPEEIDGNLPSELTDVYSFGVVCFEVATRARPFPGMGSQQVTRAVAVEGKRPQIPKVSSPSANVVHLMKSCWQQKPSQRPEGFTPVVWTLSKVASRV 857
E+DF ++ R + G G+FG V W+G VAVK+L + A + R+++ + L H +I A T+ PELC++ME AR GSL S LR+ ++ A V + + A+GM +LH++ I+H DL+S N+LV ++ H+K+SDFGL TK S + + WM+PE +D E DVYSFGVV +E+ TR PF GM Q+ RA+ G+RP +P + A+ + L+ CW P RP F V+ L VA +
Sbjct: 10 EIDFT-EIKLIRKI--GQGAFGAVLLGMWQGTEVAVKRLV--NMAPSAQKEFRREVAMLHKLRHPHVILFMGACTLAPELCIIMEHARIGSLYSVLRNKHNQIDMATVVRWATETAKGMNYLHTRTPAIVHRDLKSVNLLVDADWHIKVSDFGLARTKAT-SQHAYTQVGTWG-WMAPEVLDNKPYDEKADVYSFGVVLWELLTREEPFKGMHPMQIMRAID-RGERPPLPADVNCPASYLELLHGCWDADPPSRPT-FEQVLEQLQLVAGEL 273
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Match: L8GLZ6_ACACA (Guanylate cyclase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GLZ6_ACACA) HSP 1 Score: 167 bits (424), Expect = 2.160e-38 Identity = 100/290 (34.48%), Postives = 165/290 (56.90%), Query Frame = 3 Query: 6 LRRTEKTVLQDWIELDFAKDLDFARSVELGSGSFGTVRTAKWRGVGVAVKQLAATGVQRDAIRALRKDLRLHCSLNHKFLIRLYAASTVKPELCLVMELARGGSLLSYLRDSDGP-LEDALQVSFLYDIARGMQFLHSKGILHGDLRSTNVLVCSNDHLKLSDFGLFSTKKKISNLSGRGISVRARWMSPEEIDGNLPSE--LTDVYSFGVVCFEVATRARPFPGMGSQQVTRAVAVEGKRPQIPKVSSPS--ANVVHLMKSCWQQKPSQRPEGFTPVVWTLSKVASRVG 860
++R EK DW E+D +L+ +LG+G +G VR A W+G VAVK + + R+ R ++++R+ +L H ++ AA T P++C+VMEL GSL L + P + AL+ Y A+GM FLHS GI+H DL+S N+L+ S ++K+SDFGL K++++ + + + W +PE ++ + + + D+YSFG++ +E++TR +P+ GM V AV + RP +P++ S A V L+++CW P+ RP F V+ LS + G
Sbjct: 90 MKRAEKE--DDW-EVDM-NELEMGE--QLGTGGYGEVRKAMWKGTEVAVKMMISENAGRELERNFKEEVRVMTALRHPNVVLFMAACTKPPKMCIVMELMALGSLFDLLHNELIPDIPFALRNKMAYQAAKGMHFLHSSGIVHRDLKSLNLLLDSKWNVKVSDFGLTKFKEEMNRNAAKEVQGSVHWTAPEILNEAMDIDYMVADIYSFGIILWELSTRQQPYMGMSPAAVAVAVLRDNTRPPLPELEQTSVPAEFVELIRNCWHHDPTVRPS-FLEVMTRLSALGGEGG 372
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Match: D7FM46_ECTSI (Putative Leucine Rich Repeat Protein Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM46_ECTSI) HSP 1 Score: 165 bits (418), Expect = 7.740e-38 Identity = 103/286 (36.01%), Postives = 154/286 (53.85%), Query Frame = 3 Query: 66 LDFARSVELGSGSFGTVRTAKWRGVGVAVKQLAATGVQRDAIRALRKDLRLHCSLNHKFLIRLYAASTVKPELCLVMELARGGSLLSYLRDSDGPLEDAL----QVSFLYDIARGMQFLHSKGILHGDLRSTNVLVCSNDHLKLSDFGLFSTKKKISNLSGRGISVRARWMSPEEIDGNLPSELTDVYSFGVVCFEVATRARPFPGMGSQQVTRAVAVEGKRP---QIPKVSSPSANVVHLMKSCWQQKPSQRPEGFTPVVWTLSKVASRVG-DPRKPRALETKAE 899
L F LG+G FGTV A G VAVK+L ++ + + LR+D++ ++ + F++R TV+P +C+V E A +L L D + L + + LYD+ARG+ FLH K ++HG+L+STNVLV N+ LK+SDFG+ + ++ S L G A W +PE +D PS L+DVYSFG++ EV T+ PF G +V AV +G RP + + P + L+ CW Q P+ RP +V L + + +G DPR +T E
Sbjct: 135 LQFLGERSLGNGGFGTVLGASLEGAPVAVKKLNNQNIRAELLDGLRRDVQDFHAMQYDFVVRTLGGCTVRPNVCIVQEQA-ATNLFDLLHRPDLSIPLTLPSPEKAAMLYDVARGLHFLHVKRMVHGNLKSTNVLVFENNRLKVSDFGMIALRESQS-LGGGDTVGSAAWTAPEVLDDQNPSVLSDVYSFGILVHEVLTQRVPFAGKNVAKVITAVVAKGHRPGYLENEEAQFPPG-LTKLVDVCWTQDPAARPTSLNGIVTELGHILNALGGDPRPQPHTQTAGE 417 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10027.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10027.79.1 >prot_P-canaliculata_contig10027.79.1 ID=prot_P-canaliculata_contig10027.79.1|Name=mRNA_P-canaliculata_contig10027.79.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=916bp MELARGGSLLSYLRDSDGPLEDALQVSFLYDIARGMQFLHSKGILHGDLRback to top mRNA from alignment at P-canaliculata_contig10027:544..10881+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10027.79.1 ID=mRNA_P-canaliculata_contig10027.79.1|Name=mRNA_P-canaliculata_contig10027.79.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=10338bp|location=Sequence derived from alignment at P-canaliculata_contig10027:544..10881+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10027:544..10881+ >mRNA_P-canaliculata_contig10027.79.1 ID=mRNA_P-canaliculata_contig10027.79.1|Name=mRNA_P-canaliculata_contig10027.79.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=5496bp|location=Sequence derived from alignment at P-canaliculata_contig10027:544..10881+ (Pelvetia canaliculata dioecious)back to top |