mRNA_P-canaliculata_contig100260.78.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A2D6PXP4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6PXP4_9BACT) HSP 1 Score: 121 bits (304), Expect = 4.700e-29 Identity = 73/173 (42.20%), Postives = 99/173 (57.23%), Query Frame = 1 Query: 1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSADGSG----KVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHN-GVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLF 504 V+ ++ G W LVA P FG V+IDG+ +AV + AD +G V+++ ++ W A + A D AGD+FG +I+LQGDRL VGA +HD G W TGAAY+FE + W QT +LV D+FG V LDG VAIGA + D + D+GAVY+F Sbjct: 133 VYCRTGGTWDLEAKLVAVDPSPWALFGS-VAIDGDTIAVGAIGADAAGVDTGAVYVFSRNSAGWAQQAKLLAGDGAAGDRFGGTIALQGDRLVVGAPRHDDGAGTW-TGAAYVFERNGGAWTQTTELVA----SDATPDDRFGHGVALDGATVAIGAPYRDGNGADAGAVYVF 299
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A2G6ESM3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6ESM3_9GAMM) HSP 1 Score: 108 bits (271), Expect = 2.240e-24 Identity = 68/178 (38.20%), Postives = 106/178 (59.55%), Query Frame = 1 Query: 1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSS-PSADG-------SGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGA-AFEDASSEDSGAVYLFD 507 +F+ + G WV + L A + FG+ VS+D +A+ + +G G V+++ + ++W +A +TA+D D+FG S SL G+R+A+GA + NG + GAAY+F+L N+ W+Q+ KL+ A GS A D FG S+ L+GNRVAIG+ +D ++ GAVYLFD Sbjct: 228 IFDFNDGSWVQSAKLTASDGTNHSSFGNFVSLDNNRVAIRAYGQREGLFSHTIRPGAVYIFDFNGSSWVQSAKLTASDGDKWDKFGASFSLDGNRIAIGAHGVNVNGNDSQGAAYIFDLGNDGWRQSAKLI--AADGS--ADDHFGGSISLNGNRVAIGSNETDDNNNAPQGAVYLFD 401
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A6H9KVA8_9BACT (T9SS C-terminal target domain-containing protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A6H9KVA8_9BACT) HSP 1 Score: 108 bits (270), Expect = 2.780e-24 Identity = 59/172 (34.30%), Postives = 86/172 (50.00%), Query Frame = 1 Query: 1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAV----SSPSADGSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLF 504 +F +S W E + A D G RFG VSI+G+ + V +S + SG +++ + W +TA D D FG S+S+ GD + VGA D +G N+G+AY+F S W Q K N A +FG +V +DGN IGA +D +SG+ Y+F Sbjct: 187 IFHRSGTSWTEQEKITASDADAGDRFGGQVSINGDYVIVGARHNSDAGSSSGSAYIFSRSGTTWTEQQKITANDAATDDYFGQSVSINGDYVIVGAWGDD-DGASNSGSAYIFNRSGATWTQQAKF----NANDAEANHRFGYAVSIDGNNAIIGAFLDDDGVSNSGSAYIF 353
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A7C7GN53_9FLAO (Uncharacterized protein (Fragment) n=2 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7GN53_9FLAO) HSP 1 Score: 108 bits (269), Expect = 4.200e-24 Identity = 59/172 (34.30%), Postives = 99/172 (57.56%), Query Frame = 1 Query: 1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGE-LLAVSSPSADGSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSE--DSGAVYLFD 507 ++E + G W+ + L+A G FG+ VSI G+ ++A S +GSG ++Y+ + W + +T +D AGD+FG ++S+ G+R VG+ + D NG +G+AY+FEL W Q+QK+ D FG++V +DGN IG+ F+D ++ SG+ Y+F+ Sbjct: 212 IYELNNGSWMQTQILIASDAAAGDEFGYAVSISGDRVIAGSYKDDNGSGSAYIYELIGSTW-VESKITPSDGAAGDEFGYTVSISGNRAIVGSLRDDDNGN-ESGSAYIFELIGSFWVQSQKITPSDG----APDDYFGNAVSIDGNAAVIGSKFDDKNNNVLSSGSAYVFE 377
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: W4LTA5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Entotheonella factor TaxID=1429438 RepID=W4LTA5_9BACT) HSP 1 Score: 103 bits (256), Expect = 5.970e-24 Identity = 64/163 (39.26%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 1 VFEK-SLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSADG----SGKVFLYQ-QDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFEL-SNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFED 468 VFE+ S+G W LVA ++FG V+IDG+ + + + + +G ++++ Q + WQ A +TA+DT GD FG+S+SL GDRL +GA NG +++GAAY+FE SN WQ+ KL+ A+ G D FG SV +DG+R+ +GA D Sbjct: 75 VFERLSVGNWQEVAKLVASDGLSVSQFGSSVAIDGDRVVIGAAGDNNGSRNAGSAYVFERQGKGNWQEVAKLTASDTEPGDLFGESVSLSGDRLVIGAIGEADNG-FSSGAAYVFERQSNGNWQEVAKLL--ASDGDFT--DSFGKSVSIDGDRLVVGAFLAD 232
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A3M1PD12_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1PD12_9BACT) HSP 1 Score: 106 bits (264), Expect = 8.080e-24 Identity = 66/172 (38.37%), Postives = 91/172 (52.91%), Query Frame = 1 Query: 1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSADGS----GKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLF 504 VFE+ G W L A + FG VSI G+ V + DGS G ++Y D + W AA +TA+D DQFG S+SL GDR VGA D G+ +TG AY+FE W Q KL+ A+ G++ D FG SV LDG+R +G+ + ++ GA Y++ Sbjct: 180 VFERGAGGWSQVAKLTASDGENNDNFGMAVSISGDRALVGAYLEDGSSTDVGAAYMYAWDGSTWSEAAKLTASDGVNNDQFGYSVSLDGDRALVGAWVGDGLGM-DTGTAYVFEWDGSSWSQAAKLM--ASDGALD--DGFGVSVSLDGDRALVGSYLDGDFDQNYGAAYVY 346
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: UPI00082E65DD (FG-GAP repeat protein n=1 Tax=Methanoculleus horonobensis TaxID=528314 RepID=UPI00082E65DD) HSP 1 Score: 105 bits (263), Expect = 8.390e-24 Identity = 60/171 (35.09%), Postives = 89/171 (52.05%), Query Frame = 1 Query: 1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSAD--GSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASS-EDSGAVYLF 504 VF G+W + A P G FG V++ G L+ V + +AD G+G ++L+++ W+ A V D A D FG ++++ GD +AVGA + D G + GAAY+F L KL G A DQFG ++ L G+ +A+GA D D+GA+YLF Sbjct: 185 VFTCRGGEWTNTAKITAGDPTPGAYFGQSVAVRGGLIVVGARNADPDGAGAIYLFRESSEGWEEIAKVAPPDGKADDNFGFTVAMAGDTIAVGARRADLPGAKDAGAAYVFSLHGNSVDLVTKLTA----GDARAGDQFGQAIALAGDLIAVGANRADTEEGADTGAIYLF 351
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: X1UR08_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1UR08_9ZZZZ) HSP 1 Score: 102 bits (255), Expect = 1.170e-23 Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 1 Query: 43 LVADTPDVGTRFGHDVSIDGELLAVSSPSADGSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLF 504 L A FG VSIDG+ + +P D G +++Q + AW A +TA+D AGDQFG S+S+ GDR +GA D G +G+AY+F+ W + KL A+ G+ A D FG V + G+R IGA F+D + SG+ Y++ Sbjct: 80 LTASDGATNDEFGSSVSIDGDRAIIGAPGDDPCGSAYVFQWNGTAWVEEAKLTASDGAAGDQFGCSVSINGDRAVIGAYYDDDKGD-RSGSAYVFKWDGTAWVEEAKLT--ASDGA--ATDCFGGFVSISGDRAVIGARFDDDNGLSSGSAYVY 228
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A7V7T2N6_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7V7T2N6_9PROT) HSP 1 Score: 105 bits (263), Expect = 1.170e-23 Identity = 67/177 (37.85%), Postives = 94/177 (53.11%), Query Frame = 1 Query: 1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSS----PSADGSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLFDTESG 519 V++ G W AET+ DV FG VS+ G+ + + + SG +++ +W + A+D AGD FG S+SL GDR +GA D G ++ G+AY+F+LS W +T KL A GS A D FG +V L G R IGA F+DA DSG+ YLF+ + G Sbjct: 198 VYDLQGGSW--AETIKLIANDVTYYFGFSVSLSGDRALIGTYGNEDNGSNSGAAYVFDLQGGSWSQTDKLLASDGAAGDYFGWSVSLYGDRALIGAYGDDDKGSYS-GSAYVFDLSGGTWAETAKLT--AADGS--ANDYFGHTVSLFGARALIGAYFDDAIGNDSGSAYLFELQGG 367
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A3M0C4T8_9PROT (FG-GAP repeat protein n=1 Tax=Eilatimonas milleporae TaxID=911205 RepID=A0A3M0C4T8_9PROT) HSP 1 Score: 105 bits (261), Expect = 1.710e-23 Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 1 Query: 1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSAD----GSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLF 504 +FE G+W L+A G FG +S+ + + V + D +G ++++Q WQF +TA+D+ AGD FG + L GDR +GA++ D N GAAY+FE +N WQQ K+V D+FG+ V + G V +G+ + D GA Y+F Sbjct: 182 IFEDKGGEWQQTAVLLAPDRAPGDVFGISLSLSKDHILVGADLTDEGGENAGSAYIFEQIDGTWQFETKLTASDSDAGDLFGIRVKLNGDRALIGAARDDE-AAENAGAAYIFERTNNGWQQDTKIVAP----DATKDDRFGTRVAISGKTVIVGSILSNIEGTDVGAAYVF 348 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100260.78.1 >prot_P-canaliculata_contig100260.78.1 ID=prot_P-canaliculata_contig100260.78.1|Name=mRNA_P-canaliculata_contig100260.78.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=174bp VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSADGSGKVback to top mRNA from alignment at P-canaliculata_contig100260:506..1027- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100260.78.1 ID=mRNA_P-canaliculata_contig100260.78.1|Name=mRNA_P-canaliculata_contig100260.78.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at P-canaliculata_contig100260:506..1027- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100260:506..1027- >mRNA_P-canaliculata_contig100260.78.1 ID=mRNA_P-canaliculata_contig100260.78.1|Name=mRNA_P-canaliculata_contig100260.78.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at P-canaliculata_contig100260:506..1027- (Pelvetia canaliculata dioecious)back to top |