mRNA_P-canaliculata_contig10011.60.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: UPI0013EBC1F3 (hypothetical protein n=1 Tax=unclassified Paludisphaera TaxID=2624067 RepID=UPI0013EBC1F3) HSP 1 Score: 54.3 bits (129), Expect = 5.760e-6 Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 1 Query: 4 ADLDLHVFEPGGEEVYFGERLGDVGIMSD-DSTEGFGSET-YTLL-----NGLAIDEDEILGTYRAWVT--NGQPGTP----WVMTARLAGEL 243
ADLDLHV EPGG+E+Y+ ER GD G D D+T GFG E Y L+ +G I D G YR +V+ G G P W + + AG +
Sbjct: 199 ADLDLHVIEPGGKEIYWEERRGDQGGELDVDNTRGFGPENIYWLVETGKDDGSQIKGDGPPGVYRWFVSYYGGFGGIPKPTQWQVRIKHAGHV 291
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: UPI001BE1B650 (hypothetical protein n=1 Tax=Dyadobacter sp. CECT 9275 TaxID=2822344 RepID=UPI001BE1B650) HSP 1 Score: 52.4 bits (124), Expect = 2.480e-5 Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1 Query: 1 NADLDLHVFEPGGEEVYFGERLGDV--GIMSDDSTEGFGSETYTLLNGLAIDEDEILGTYRAWVT--NGQPGTPWVMTARLA 234
N D+DLHV EPGGEE+YFG++ +V G + D T+G+G E N A D G Y+ +V G P T + +T A
Sbjct: 182 NTDIDLHVIEPGGEEIYFGDKRSNVTGGQLDRDDTDGYGPENIFWEN--APD-----GEYKVFVHYYGGTPRTRYFITINTA 256
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A2N7ND05_9VIBR (Uncharacterized protein n=5 Tax=Vibrio TaxID=662 RepID=A0A2N7ND05_9VIBR) HSP 1 Score: 52.0 bits (123), Expect = 4.000e-5 Identity = 31/86 (36.05%), Postives = 44/86 (51.16%), Query Frame = 1 Query: 4 ADLDLHVFEPGGEEVYFGERLGDVGIMSDDSTEGFGSETYTLLNGLAIDEDEI-LGTYRAWVTN-----GQPGTPWVMTARLAGEL 243
D+DLH FEP G +VY+ R+G+VG + D+T G+G E Y D D + LG Y V N G+ T + T ++ L
Sbjct: 315 GDVDLHTFEPNGMQVYYQNRVGNVGELDVDNTSGYGPEHYFA----TCDRDSLELGVYSIGVNNYARAEGRIATVQISTGSISDVL 396
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A6U3UJW2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UJW2_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 4.140e-5 Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1 Query: 1 NADLDLHVFEPGGEEVYFGERLGDVG-IMSDDSTEGFGSETYTL 129
N D+DLHV EP G E+Y+G R D+G +S D T+G+G E Y L
Sbjct: 41 NTDIDLHVKEPSGNEIYYGNRESDIGGNLSRDFTKGYGPEVYIL 84
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A1M5TDE1_9FLAO (TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region n=1 Tax=Winogradskyella jejuensis TaxID=1089305 RepID=A0A1M5TDE1_9FLAO) HSP 1 Score: 52.0 bits (123), Expect = 4.490e-5 Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 Query: 1 NADLDLHVFEPGGEEVYFGERLGDVG-IMSDDSTEGFGSETYTLLN 135
N DLDLH+ P GE++Y+G+ G I+SDD TEG+G ET+ + N
Sbjct: 1035 NTDLDLHIKNPAGEDLYYGKTTSRFGGIISDDMTEGYGPETFKIKN 1080
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A1U7GDE0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium 71-10 TaxID=1895807 RepID=A0A1U7GDE0_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 4.800e-5 Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 1 Query: 1 NADLDLHVFEPGGEEVYFGERLGDVGIMSD-DSTEGFGSETYTLL------NGLAIDEDEILGTYRAWVT--NGQPGTP----WVMTARLAGELEWTIYGVIPANYSYDDNRTFYPVTV 318
+ DLDLHV EPGG+E+Y+ ER GD G D D+T G+G E L +G + D G Y+ +V G G P W + + AG + T+ G + A D+ Y +TV
Sbjct: 169 DVDLDLHVVEPGGKEIYWEERKGDHGGELDVDNTRGYGPENIYWLTETDDPDGPEVRGDGPPGVYKWFVVYYGGFGGIPKPTQWQVRIKHAGRVS-TVRGKLRA---LDERTKVYTLTV 283
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A850BLY1_9DELT (VWA domain-containing protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BLY1_9DELT) HSP 1 Score: 51.6 bits (122), Expect = 6.060e-5 Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 1 Query: 1 NADLDLHVFEPGGEEVYFGER-LGDVGIMSDDSTEGFGSETYTLLNGLA 144
N D+DLHV EP GEE Y+G R G ++ D T+G+G E YTL G A
Sbjct: 891 NTDVDLHVIEPSGEECYYGHRRTRSGGSLTQDVTQGYGPEMYTLTGGPA 939
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: UPI001F16BF7A (putative Ig domain-containing protein n=1 Tax=unclassified Nocardioides TaxID=2615069 RepID=UPI001F16BF7A) HSP 1 Score: 51.2 bits (121), Expect = 7.830e-5 Identity = 34/98 (34.69%), Postives = 44/98 (44.90%), Query Frame = 1 Query: 4 ADLDLHVFEPGGEEVYFGERLGDVGIMSD-DSTEGFGSET-------YTLLNGLAIDEDEILGTYRA----WVTNGQPGTPWVMTARLAGELEWTIYG 261
AD+DLHV +P GEE+Y+G R D G D D+ G G + Y NG + GTY W G PW +T R+ G + I G
Sbjct: 480 ADMDLHVTDPAGEEIYYGNRTSDSGGQLDRDANAGCGEQNPSPVENVYWPPNGAPV------GTYAVQVVTWSACGTVSQPWHLTVRVRGAVVLDISG 571
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A0Q8VQ02_9ACTN (IPT/TIG domain-containing protein n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q8VQ02_9ACTN) HSP 1 Score: 51.2 bits (121), Expect = 8.040e-5 Identity = 34/98 (34.69%), Postives = 44/98 (44.90%), Query Frame = 1 Query: 4 ADLDLHVFEPGGEEVYFGERLGDVGIMSD-DSTEGFGSET-------YTLLNGLAIDEDEILGTYRA----WVTNGQPGTPWVMTARLAGELEWTIYG 261
AD+DLHV +P GEE+Y+G R D G D D+ G G + Y NG + GTY W G PW +T R+ G + I G
Sbjct: 632 ADMDLHVTDPAGEEIYYGNRTSDSGGQLDRDANAGCGEQNPSPVENVYWPPNGAPV------GTYAVQVVTWSACGTVSQPWHLTVRVRGAVVLDISG 723
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A7X7WA44_9THEM (Uncharacterized protein (Fragment) n=1 Tax=Thermotogaceae bacterium TaxID=2268206 RepID=A0A7X7WA44_9THEM) HSP 1 Score: 50.1 bits (118), Expect = 8.180e-5 Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1 Query: 1 NADLDLHVFEPGGEEVYFGERLGDVGIMSDDSTEGFGSETYTLLNGLAIDEDEILGTYR 177
+AD+DLHV+EP E VY+ E + G + D T+G+G E YTLL E I G YR
Sbjct: 90 HADIDLHVYEPDEEHVYY-ENMKGAGELDRDDTDGYGPEHYTLLR-----ERAIYGDYR 142 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10011.60.1 >prot_P-canaliculata_contig10011.60.1 ID=prot_P-canaliculata_contig10011.60.1|Name=mRNA_P-canaliculata_contig10011.60.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=132bp NADLDLHVFEPGGEEVYFGERLGDVGIMSDDSTEGFGSETYTLLNGLAIDback to top mRNA from alignment at P-canaliculata_contig10011:5768..6787+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10011.60.1 ID=mRNA_P-canaliculata_contig10011.60.1|Name=mRNA_P-canaliculata_contig10011.60.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1020bp|location=Sequence derived from alignment at P-canaliculata_contig10011:5768..6787+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10011:5768..6787+ >mRNA_P-canaliculata_contig10011.60.1 ID=mRNA_P-canaliculata_contig10011.60.1|Name=mRNA_P-canaliculata_contig10011.60.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at P-canaliculata_contig10011:5768..6787+ (Pelvetia canaliculata dioecious)back to top |