mRNA_P-canaliculata_contig100064.57.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Match: UPI001F1FF6EA (SufE family protein n=2 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI001F1FF6EA) HSP 1 Score: 217 bits (553), Expect = 9.730e-71 Identity = 105/132 (79.55%), Postives = 119/132 (90.15%), Query Frame = 1 Query: 1 MTYPANIQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGCASQVWLISEEADGVWTFAGDSDAHIVKGLVAIVLEIFSGRSAADIAALDANDILAKLGLSEHLSAQRSNGLAAMIGRIKAE 396 MTYP NIQD+IDDFAFLDDWEDRYMHVIDLGK LPPLP A+T+ NKVKGCASQVWL+S++ + W F+GDSDAHIVKGLVAIVLEI+SGR+A +I+ LDANDIL+KLGLSEHLSAQR+NGLAAMI RIK E Sbjct: 4 MTYPENIQDLIDDFAFLDDWEDRYMHVIDLGKALPPLPLEAKTDVNKVKGCASQVWLVSDQKNDAWKFSGDSDAHIVKGLVAIVLEIYSGRTAEEISKLDANDILSKLGLSEHLSAQRANGLAAMIARIKTE 135
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Match: UPI000406440D (SufE family protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI000406440D) HSP 1 Score: 184 bits (467), Expect = 1.270e-57 Identity = 95/138 (68.84%), Postives = 107/138 (77.54%), Query Frame = 1 Query: 1 MTYPANIQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGCASQVWLISEEADG---VWTFAGDSDAHIVKGLVAIVLEIFSGRSAADIAALDANDILAKLGLSEHLSAQRSNGLAAMIGRIKAETAA 405 M+YP +IQDMIDDFAFL DWE+RYMHVIDLGK LPPL + E KVKGC SQVWL+S++ G V TF GDSDAHIVKGLVA+ L+IFS R A+ I LDA +IL +L L EHLS QRSNGL AMIGRIKAE AA Sbjct: 1 MSYPQDIQDMIDDFAFLSDWEERYMHVIDLGKALPPLSEAEKNEATKVKGCVSQVWLVSDKTGGDDPVLTFRGDSDAHIVKGLVAVALQIFSNRKASKIHELDATEILKELDLQEHLSPQRSNGLKAMIGRIKAEAAA 138
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Match: A0A420WFH8_9PROT (Cysteine desulfuration protein SufE n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WFH8_9PROT) HSP 1 Score: 179 bits (455), Expect = 1.070e-55 Identity = 92/132 (69.70%), Postives = 103/132 (78.03%), Query Frame = 1 Query: 10 PANIQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGCASQVWLISE---EADGVWTFAGDSDAHIVKGLVAIVLEIFSGRSAADIAALDANDILAKLGLSEHLSAQRSNGLAAMIGRIKAE 396 P NIQD+I DF FLD WEDRYMHVID+GK LPPL +T+ KVKGC SQVWL+SE E + V F GDSDAHIVKGLVA+VLEIFSGR A++I L+A IL KLGLSEHLS QRSNGL AM+ RIKAE Sbjct: 10 PENIQDLISDFEFLDSWEDRYMHVIDMGKSLPPLEPALKTDATKVKGCVSQVWLVSERSGEENPVLKFKGDSDAHIVKGLVAVVLEIFSGRHASEILKLEARSILEKLGLSEHLSPQRSNGLQAMVARIKAE 141
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Match: A0A7C5LYB0_9PROT (SufE family protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5LYB0_9PROT) HSP 1 Score: 177 bits (448), Expect = 9.290e-55 Identity = 88/130 (67.69%), Postives = 100/130 (76.92%), Query Frame = 1 Query: 1 MTYPANIQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGCASQVWLISEEADGVWTFAGDSDAHIVKGLVAIVLEIFSGRSAADIAALDANDILAKLGLSEHLSAQRSNGLAAMIGRIK 390 M NIQD+IDDFAFLDDWEDRYMHVI++GK L PL Q ++NKV GC SQVWL+ E DG F GDSDAHIVKGLVAIVLEIFSGR+ DI ALDA I+ LGL+EHLS QR+NGL +MI RI+ Sbjct: 1 MELAENIQDLIDDFAFLDDWEDRYMHVIEMGKALTPLSPSEQNDENKVSGCVSQVWLVHELRDGKLYFRGDSDAHIVKGLVAIVLEIFSGRTPQDIRALDAESIIKNLGLAEHLSTQRANGLKSMIARIQ 130
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Match: A0A7W7YYA6_9HYPH (Cysteine desulfuration protein SufE n=1 Tax=Shinella fusca TaxID=544480 RepID=A0A7W7YYA6_9HYPH) HSP 1 Score: 169 bits (429), Expect = 7.720e-52 Identity = 87/133 (65.41%), Postives = 105/133 (78.95%), Query Frame = 1 Query: 13 ANIQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGCASQVWLISEE---ADGVWTFAGDSDAHIVKGLVAIVLEIFSGRSAADIAALDANDILAKLGLSEHLSAQRSNGLAAMIGRIKAETA 402 A +QD+IDDFAFL+DWEDRY +VI+LGK LP LP +T QNKV+GCASQVWL+S AD V TF GDSDAHIV+GLVAIVL I+SGR A+DIAA DA D ++GL EHLS+QR+NGL +M+ RI+ E A Sbjct: 2 ATLQDIIDDFAFLEDWEDRYRYVIELGKALPDLPEDKRTAQNKVQGCASQVWLVSHTEGGADPVMTFEGDSDAHIVRGLVAIVLAIYSGRHASDIAATDAIDTFNEIGLVEHLSSQRANGLRSMVKRIREEAA 134
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Match: UPI001783A88F (SufE family protein n=1 Tax=Rhizobium sp. CFBP 8762 TaxID=2775279 RepID=UPI001783A88F) HSP 1 Score: 167 bits (423), Expect = 6.730e-51 Identity = 83/132 (62.88%), Postives = 107/132 (81.06%), Query Frame = 1 Query: 19 IQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGCASQVWLISE----EADGVWTFAGDSDAHIVKGLVAIVLEIFSGRSAADIAALDANDILAKLGLSEHLSAQRSNGLAAMIGRIKAETA 402 I ++ID+F++LDDWEDRY +VI+LGK LP LP +T +NKV+GCASQVWL++ EAD V TF GDSDAHIV+GLVAIVL +SG++A++IA LDA D+ K+GL EHLS+QR+NGL +MIGRIK+E A Sbjct: 3 IDEIIDEFSYLDDWEDRYRYVIELGKSLPDLPETERTAENKVQGCASQVWLVTHQQGGEADPVLTFEGDSDAHIVRGLVAIVLATYSGKAASEIATLDALDVFGKIGLVEHLSSQRANGLRSMIGRIKSEAA 134
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Match: A0A2G2J867_9PROT (Cysteine desulfuration protein SufE n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J867_9PROT) HSP 1 Score: 167 bits (422), Expect = 9.860e-51 Identity = 88/138 (63.77%), Postives = 101/138 (73.19%), Query Frame = 1 Query: 1 MTYPANIQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGCASQVWLISE---EADGVWTFAGDSDAHIVKGLVAIVLEIFSGRSAADIAALDANDILAKLGLSEHLSAQRSNGLAAMIGRIKAETAA 405 MTYP NIQ+MIDDFAFL+DWEDRYMHVI++GK L PL T NKV GC SQVWLI++ + + GDSDAHIVKGLVAIV+ IFSGR+ DI DA IL +LGLSEHLS QRSNGL AMI RI+ + A Sbjct: 1 MTYPQNIQNMIDDFAFLEDWEDRYMHVIEMGKALAPLSEADHTPANKVNGCVSQVWLITDVHTAPEPTLHYRGDSDAHIVKGLVAIVINIFSGRTPKDIINTDAKAILDQLGLSEHLSMQRSNGLNAMIARIQQDARA 138
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Match: A0A386DU92_9HYPH (Cysteine desufuration protein n=5 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A386DU92_9HYPH) HSP 1 Score: 166 bits (419), Expect = 2.650e-50 Identity = 84/132 (63.64%), Postives = 103/132 (78.03%), Query Frame = 1 Query: 13 ANIQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGCASQVWLIS----EEADGVWTFAGDSDAHIVKGLVAIVLEIFSGRSAADIAALDANDILAKLGLSEHLSAQRSNGLAAMIGRIKAE 396 A +Q +IDDFAFLDDWEDRY +VI+LGK LP LP +T +NKV+GCASQVWL+S + AD V TF GDSDAHIV+GLVAIVL +SG+ A+DI A DA DI K+GL EHLS+QR+NGL +M+ RI+ E Sbjct: 2 AQLQQIIDDFAFLDDWEDRYRYVIELGKALPDLPEEQKTSENKVQGCASQVWLVSHVADDSADPVMTFDGDSDAHIVRGLVAIVLATYSGKHASDIVATDALDIFDKIGLVEHLSSQRANGLRSMVKRIREE 133
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Match: A0A7W3WAR6_9HYPH (SufE family protein n=1 Tax=Rhizobium sp. G21 TaxID=2758439 RepID=A0A7W3WAR6_9HYPH) HSP 1 Score: 165 bits (418), Expect = 3.530e-50 Identity = 83/131 (63.36%), Postives = 102/131 (77.86%), Query Frame = 1 Query: 13 ANIQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGCASQVWLISEEADG---VWTFAGDSDAHIVKGLVAIVLEIFSGRSAADIAALDANDILAKLGLSEHLSAQRSNGLAAMIGRIKAE 396 A I D+I DFAFLDDWEDRY +VI+LGK LP LP +T NKV+GCASQVWL+SE +G V TF GDSDAHIV+GLVAIVL I+SG+ A+D+A LDA D ++G+ EHLSAQR+NGL +M+ RI+ E Sbjct: 2 AAIDDIISDFAFLDDWEDRYRYVIELGKALPDLPEEDRTADNKVRGCASQVWLVSEPGEGQDPVMTFRGDSDAHIVRGLVAIVLAIYSGKHASDVAKLDALDTFKEIGMIEHLSAQRANGLRSMVNRIREE 132
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Match: UPI001E315A8C (SufE family protein n=2 Tax=unclassified Rhizobium TaxID=2613769 RepID=UPI001E315A8C) HSP 1 Score: 165 bits (418), Expect = 3.530e-50 Identity = 83/131 (63.36%), Postives = 104/131 (79.39%), Query Frame = 1 Query: 13 ANIQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGCASQVWLISEEADG---VWTFAGDSDAHIVKGLVAIVLEIFSGRSAADIAALDANDILAKLGLSEHLSAQRSNGLAAMIGRIKAE 396 A+I+ +I+DF+FLD+WEDRY +VI+LGK LP LP +T +NKV+GCASQVWL+S +G V TF GDSDAHIV+GLVAIVL I+SGR A+DIAA DA D +GL EHLS+QR+NGL +MI RI+AE Sbjct: 2 ASIEQIIEDFSFLDEWEDRYRYVIELGKALPDLPESEKTAENKVQGCASQVWLVSHRGEGPDPVMTFEGDSDAHIVRGLVAIVLSIYSGRKASDIAATDAIDTFNTIGLVEHLSSQRANGLRSMIKRIRAE 132 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100064.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100064.57.1 >prot_P-canaliculata_contig100064.57.1 ID=prot_P-canaliculata_contig100064.57.1|Name=mRNA_P-canaliculata_contig100064.57.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=136bp MTYPANIQDMIDDFAFLDDWEDRYMHVIDLGKGLPPLPTGAQTEQNKVKGback to top mRNA from alignment at P-canaliculata_contig100064:175..582+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100064.57.1 ID=mRNA_P-canaliculata_contig100064.57.1|Name=mRNA_P-canaliculata_contig100064.57.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at P-canaliculata_contig100064:175..582+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100064:175..582+ >mRNA_P-canaliculata_contig100064.57.1 ID=mRNA_P-canaliculata_contig100064.57.1|Name=mRNA_P-canaliculata_contig100064.57.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at P-canaliculata_contig100064:175..582+ (Pelvetia canaliculata dioecious)back to top |