mRNA_P-canaliculata_contig100045.54.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A3B0YBJ9_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0YBJ9_9ZZZZ) HSP 1 Score: 83.6 bits (205), Expect = 2.640e-18 Identity = 49/106 (46.23%), Postives = 58/106 (54.72%), Query Frame = 1 Query: 13 QPGSLGANHSCPDPKAGRE-------------TPIWPCSGWGLPCRRCCQNPGALLPHPFTLACEVSFHRRFALCGTFPECAPESAHPAGVTRHPCFVEPGLSSRT 291 +PGS+ +HS P A R +PIW CSGWGLPC RCCQ GALLPH FTL + RR+ CGTF +P + A PC +EPGLSS T Sbjct: 10 KPGSVEDSHSSGTPVAERLKRPTREQRGPRQCSPIWSCSGWGLPCHRCCQRRGALLPHHFTLTGAYAL-RRYIFCGTFRRLSPPRRYLA-----PCPMEPGLSSMT 109
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A381NU16_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381NU16_9ZZZZ) HSP 1 Score: 67.8 bits (164), Expect = 7.020e-13 Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 2 Query: 29 ERTTPALTQKPGARPLFGLAPGGVCHAGAVARTPVRFYRTLSPLPVKFPSIGGLLSVALSLNAH 220 ER TP PLFGLAPGGVC A V +PVR YRTLSPLPV +IGGLLSVALS+ + Sbjct: 14 ERATPC--------PLFGLAPGGVCLATPVTGSPVRPYRTLSPLPVPQAAIGGLLSVALSVASR 69
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A1B2AFP3_9SPHN (Uncharacterized protein n=1 Tax=Tsuneonella dongtanensis TaxID=692370 RepID=A0A1B2AFP3_9SPHN) HSP 1 Score: 69.3 bits (168), Expect = 2.080e-12 Identity = 43/72 (59.72%), Postives = 46/72 (63.89%), Query Frame = 2 Query: 65 ARPLFGLAPGGVCHAGAVARTPVRFYRTLSPLPVKFPSIGGLLSVALSLNAHPKARIRRALPATLVSWSPDF 280 ARPLFGLAPGGVC A V RTPVR YRTLS LP++ GGLLSVALSL LPA V+ P F Sbjct: 67 ARPLFGLAPGGVCRASPVTRTPVRSYRTLSALPLER---GGLLSVALSLR----------LPAAGVTRHPCF 125
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A1M5BM71_9RHOB (Uncharacterized protein n=1 Tax=Loktanella atrilutea TaxID=366533 RepID=A0A1M5BM71_9RHOB) HSP 1 Score: 61.2 bits (147), Expect = 2.160e-9 Identity = 40/77 (51.95%), Postives = 47/77 (61.04%), Query Frame = 2 Query: 5 LAANPGLSERTT----PALTQKPGARPLFGLAPGGVCHAGAVARTPVRFYRTLSPLPVKFPSIGGLLSVALSLNAHP 223 LAANPGLS + + P+L GARPLFG+APGG C A +VA V Y T+SP P + G L SVALSL P Sbjct: 31 LAANPGLSGQASLPGYPSLDHT-GARPLFGIAPGGACRAASVAGRAVGSYPTVSPFPC---TQGSLFSVALSLGLPP 103
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A3E0H6S5_9GAMM (Uncharacterized protein n=1 Tax=Paraperlucidibaca baekdonensis TaxID=748120 RepID=A0A3E0H6S5_9GAMM) HSP 1 Score: 54.7 bits (130), Expect = 6.070e-7 Identity = 34/75 (45.33%), Postives = 37/75 (49.33%), Query Frame = 3 Query: 60 RARDPYLALLRVGFAMQALLPEPRCAFTAPFHPCL*SFLPSAVCSLWHFP*MRTRKRASGGRYPPPLFRGARTFL 284 RA L G LLP+ CA TAPFHP L + PSAVCSL HFP R + G L ARTFL Sbjct: 73 RASGHLFGLASSGVCRTGLLPDSWCALTAPFHPYLIPYGPSAVCSLLHFPSARAAQALPG-----TLPYEARTFL 142
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A158S2I3_9SPHN (Uncharacterized protein n=1 Tax=Novosphingobium sp. KN65.2 TaxID=1478134 RepID=A0A158S2I3_9SPHN) HSP 1 Score: 53.9 bits (128), Expect = 8.950e-7 Identity = 40/97 (41.24%), Postives = 47/97 (48.45%), Query Frame = 3 Query: 9 QPTRVSRSEPLLP*PKSRARDPYLALLRVGFAMQALLPEPRCAFTAPFHPCL*SF-----LPSAVCSLWHFP*MRTRKRASGGRYPPPLFRGARTFL 284 +PTR+S +P +A PY LLRVGF M + F P S L S SL FP + + GGRYPPPLFRGARTFL Sbjct: 59 KPTRLSARKP-------KASSPYSVLLRVGFTMPLAVTGSAVRFYRTLSPLPASRRGIGGLLSVALSL-SFP--SPARESPGGRYPPPLFRGARTFL 145
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A1E3GPF8_9GAMM (Uncharacterized protein n=1 Tax=Methylophaga muralis TaxID=291169 RepID=A0A1E3GPF8_9GAMM) HSP 1 Score: 49.3 bits (116), Expect = 3.400e-5 Identity = 30/54 (55.56%), Postives = 31/54 (57.41%), Query Frame = 3 Query: 3 L*QPTRVSRSEPLLP*PKSRARDPYLALLRVGFAMQALLPEPRCAFTAPFHPCL 164 L QPTR EP P + YL LL VGF M LLPE RCA TAPFHP L Sbjct: 32 LKQPTR----EPCGPHVMPKHLFLYLVLLLVGFTMPLLLPEARCALTAPFHPYL 81 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100045.54.1 >prot_P-canaliculata_contig100045.54.1 ID=prot_P-canaliculata_contig100045.54.1|Name=mRNA_P-canaliculata_contig100045.54.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=97bp RSSSQPGSLGANHSCPDPKAGRETPIWPCSGWGLPCRRCCQNPGALLPHPback to top mRNA from alignment at P-canaliculata_contig100045:120..410- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100045.54.1 ID=mRNA_P-canaliculata_contig100045.54.1|Name=mRNA_P-canaliculata_contig100045.54.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at P-canaliculata_contig100045:120..410- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100045:120..410- >mRNA_P-canaliculata_contig100045.54.1 ID=mRNA_P-canaliculata_contig100045.54.1|Name=mRNA_P-canaliculata_contig100045.54.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at P-canaliculata_contig100045:120..410- (Pelvetia canaliculata dioecious)back to top |