mRNA_M-pyrifera_M_contig124555.4991.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124555.4991.1
Unique NamemRNA_M-pyrifera_M_contig124555.4991.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: D7G2S4_ECTSI (PolyA_pol domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S4_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.900e-45
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 1
Query:    1 YSRDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
            + RDLTINSLFYN+NTGT+EDYTGKGTSDLRLGLVRTPLP CETLLDDPLR LRAVRFASRLGF VHPELM AG DP+VHEALC KV R+
Sbjct:  272 FRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPKVHEALCMKVSRE 361          
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: W7TAJ6_9STRA (Poly A polymerase, head domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAJ6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.260e-31
Identity = 59/88 (67.05%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
            RDLTIN+LFYN++TG IED+ G+G  D+R G++RTPLPA  TLLDDPLRVLRAVRFASRL F +  EL+ A +DPRVH AL  KV R+
Sbjct:  317 RDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRE 404          
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A2V0NUI1_9CHLO (PolyA_pol domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NUI1_9CHLO)

HSP 1 Score: 122 bits (307), Expect = 1.020e-30
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
            RD T+N+LFYN+N G +ED TGKG +DLR GL+RTPLPA ET LDDPLRVLRAVRFA+R GFE+HPE++ A    +V  AL  K+ R+
Sbjct:  139 RDFTVNALFYNLNAGAVEDLTGKGLTDLRAGLLRTPLPASETFLDDPLRVLRAVRFATRFGFELHPEILEAAAGEKVRSALGGKISRE 226          
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A4D9CTQ7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTQ7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.030e-30
Identity = 59/88 (67.05%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
            RDLTIN+LFYN++TG IED+ G+G  D+R G++RTPLPA  TLLDDPLRVLRAVRFASRL F +  EL+ A +DPRVH AL  KV R+
Sbjct:  292 RDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRE 379          
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A8K0TZ08_9AGAM (Uncharacterized protein n=1 Tax=Phlebopus sp. FC_14 TaxID=2615122 RepID=A0A8K0TZ08_9AGAM)

HSP 1 Score: 120 bits (302), Expect = 4.590e-30
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
            RD+TINSLFYN++T ++EDYTGKG +DLR GL+RTPLP   T LDDPLRV+R VRFASR GFE+ PEL +A  D  + EAL  K+ R+
Sbjct:  150 RDITINSLFYNVHTRSVEDYTGKGLNDLRDGLIRTPLPPLRTFLDDPLRVIRCVRFASRFGFEMTPELKDAARDATIQEALSAKISRE 237          
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A0D2MXN4_9CHLO (PolyA_pol domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MXN4_9CHLO)

HSP 1 Score: 120 bits (302), Expect = 4.820e-30
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
            RD TIN+LFYN+N G +ED TG+G +DLR GL+RTPLPA ET LDDPLRVLRAVRFA+R GF++HPE++ A    +V  AL  K+ R+
Sbjct:  143 RDFTINALFYNLNQGAVEDLTGRGLADLRAGLLRTPLPASETFLDDPLRVLRAVRFATRFGFDLHPEILQAAASDKVRTALGQKISRE 230          
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A369K2Y1_HYPMA (CCA tRNA nucleotidyltransferase, mitochondrial n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369K2Y1_HYPMA)

HSP 1 Score: 120 bits (300), Expect = 8.590e-30
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRDGRG 279
            RD T+N+LFYNI+T T+ED TGKG  DLR GL+RTPLP  ET LDDPLRVLR +RFASR GF++ PE++ A  DP + +AL +KV R+  G
Sbjct:  155 RDTTVNALFYNIHTRTVEDLTGKGLDDLRSGLIRTPLPPRETFLDDPLRVLRCIRFASRYGFKIVPEVLEAAKDPLIQDALVSKVARERAG 245          
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: D8PL51_SCHCM (PolyA_pol domain-containing protein (Fragment) n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8PL51_SCHCM)

HSP 1 Score: 114 bits (285), Expect = 1.780e-29
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
            RD+TIN+LFYNI+   +ED+TGKG  DLR G+VRTPLP  ET LDDPLRVLR +RFA+R GF++ PEL +A  D  V EAL +K+ R+
Sbjct:  155 RDITINALFYNIHDRAVEDHTGKGLDDLRSGIVRTPLPPRETFLDDPLRVLRCLRFATRFGFDIVPELSDAAKDTVVQEALISKISRE 242          
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A7J7IKC3_9RHOD (CCA tRNA nucleotidyltransferase, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IKC3_9RHOD)

HSP 1 Score: 112 bits (281), Expect = 2.140e-29
Identity = 58/90 (64.44%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    1 YSRDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
            Y RDLTIN+LFYNINT  +ED+T  G  DL  G +RTPLP   T LDDPLRVLRAVRFASR GF V P+L+ A + P+V EAL  KV RD
Sbjct:   11 YRRDLTINALFYNINTEQVEDWTQMGLRDLTNGQIRTPLPPEITFLDDPLRVLRAVRFASRFGFTVVPDLIEAASVPQVQEALVKKVSRD 100          
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A835ZFM7_9STRA (PolyA_pol domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFM7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.480e-29
Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 YSRDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKV 261
            Y RDLTIN+LFYNINTG +ED+TG+G +DL  G++ TPLPA +TLLDDPLRVLR++RFASR  F +  +L+ A  DP VH AL  KV
Sbjct:  145 YRRDLTINALFYNINTGLVEDFTGRGLTDLAAGVISTPLPAVDTLLDDPLRVLRSIRFASRFNFNMSQDLLMACKDPEVHVALAQKV 231          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2S4_ECTSI1.900e-4585.56PolyA_pol domain-containing protein n=2 Tax=Ectoca... [more]
W7TAJ6_9STRA3.260e-3167.05Poly A polymerase, head domain protein n=1 Tax=Nan... [more]
A0A2V0NUI1_9CHLO1.020e-3063.64PolyA_pol domain-containing protein n=1 Tax=Raphid... [more]
A0A4D9CTQ7_9STRA2.030e-3067.05Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8K0TZ08_9AGAM4.590e-3063.64Uncharacterized protein n=1 Tax=Phlebopus sp. FC_1... [more]
A0A0D2MXN4_9CHLO4.820e-3062.50PolyA_pol domain-containing protein n=1 Tax=Monora... [more]
A0A369K2Y1_HYPMA8.590e-3061.54CCA tRNA nucleotidyltransferase, mitochondrial n=1... [more]
D8PL51_SCHCM1.780e-2961.36PolyA_pol domain-containing protein (Fragment) n=1... [more]
A0A7J7IKC3_9RHOD2.140e-2964.44CCA tRNA nucleotidyltransferase, mitochondrial n=1... [more]
A0A835ZFM7_9STRA3.480e-2963.22PolyA_pol domain-containing protein n=1 Tax=Tribon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124555contigM-pyrifera_M_contig124555:123..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.4e-39
Seed eggNOG ortholog2880.D7G2S4
KEGG rclassRC00078
KEGG koko:K00974
KEGG ReactionR09382,R09383,R09384,R09386
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CTP:tRNA cytidylyltransferase activity
EggNOG OGsCOG0617@1,KOG2159@2759
EC2.7.7.72
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.88041-CDS-M-pyrifera_M_contig124555:122..4011622815762.88041-CDS-M-pyrifera_M_contig124555:122..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124555 123..401 +
1692277557.9152682-CDS-M-pyrifera_M_contig124555:122..4011692277557.9152682-CDS-M-pyrifera_M_contig124555:122..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124555 123..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124555.4991.1prot_M-pyrifera_M_contig124555.4991.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124555 123..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124555.4991.1

>prot_M-pyrifera_M_contig124555.4991.1 ID=prot_M-pyrifera_M_contig124555.4991.1|Name=mRNA_M-pyrifera_M_contig124555.4991.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
YSRDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPL
RVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRDGRG
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mRNA from alignment at M-pyrifera_M_contig124555:123..401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124555.4991.1 ID=mRNA_M-pyrifera_M_contig124555.4991.1|Name=mRNA_M-pyrifera_M_contig124555.4991.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig124555:123..401+ (Macrocystis pyrifera P11B4 male)
TATTCCAGAGACCTGACGATTAACTCGCTGTTCTACAACATCAACACCGG CACGATAGAAGACTACACTGGCAAGGGGACCTCGGACCTCCGCTTGGGGC TCGTCCGCACCCCCCTCCCCGCCTGCGAGACTCTCCTCGATGACCCTCTG CGCGTACTGAGGGCGGTGCGATTCGCGAGCCGACTGGGGTTCGAGGTGCA CCCGGAGCTGATGAACGCTGGGACGGACCCCAGGGTGCATGAGGCCCTGT GCACCAAGGTGAGAAGAGATGGAAGGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124555:123..401+

>mRNA_M-pyrifera_M_contig124555.4991.1 ID=mRNA_M-pyrifera_M_contig124555.4991.1|Name=mRNA_M-pyrifera_M_contig124555.4991.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig124555:123..401+ (Macrocystis pyrifera P11B4 male)
TATTCCAGAGACCTGACGATTAACTCGCTGTTCTACAACATCAACACCGG
CACGATAGAAGACTACACTGGCAAGGGGACCTCGGACCTCCGCTTGGGGC
TCGTCCGCACCCCCCTCCCCGCCTGCGAGACTCTCCTCGATGACCCTCTG
CGCGTACTGAGGGCGGTGCGATTCGCGAGCCGACTGGGGTTCGAGGTGCA
CCCGGAGCTGATGAACGCTGGGACGGACCCCAGGGTGCATGAGGCCCTGT
GCACCAAGGTGAGAAGAGATGGAAGGGGGTATTCCAGAGACCTGACGATT
AACTCGCTGTTCTACAACATCAACACCGGCACGATAGAAGACTACACTGG
CAAGGGGACCTCGGACCTCCGCTTGGGGCTCGTCCGCACCCCCCTCCCCG
CCTGCGAGACTCTCCTCGATGACCCTCTGCGCGTACTGAGGGCGGTGCGA
TTCGCGAGCCGACTGGGGTTCGAGGTGCACCCGGAGCTGATGAACGCTGG
GACGGACCCCAGGGTGCATGAGGCCCTGTGCACCAAGGTGAGAAGAGATG
GAAGGGGG
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