mRNA_M-pyrifera_M_contig124469.4978.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124469.4978.1
Unique NamemRNA_M-pyrifera_M_contig124469.4978.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Match: A0A813BG03_9DINO (Cyp3a18 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BG03_9DINO)

HSP 1 Score: 110 bits (276), Expect = 9.880e-27
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = 1
Query:    4 DFVTEMLKAGWEFDEIWREVNHLHGAHKAVAFVQQGAIFELTRPTAAKWVPLLREEWERELGDRV-PTVDDVRRGKLPITHAVIKEATRRHVVTLGTPRRLGKDITLQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF 429
            +F+T ML  G+   E+  E+NH+HGAHKAVA     A++EL+ P    W   +++E++  LG R  P   D+  G++P+  AV  E  R HVV+ GT R+ G DI   GKTI  G+E+ + +  +H  PD W +P  F+P RF
Sbjct:   78 NFITAMLDDGFTHAELVSELNHIHGAHKAVALAIAMAVYELSAPGNEGWRQAVKDEFKAVLGSRSHPERSDL--GEMPVLRAVRDEVLRLHVVSFGTMRKTGADIQHAGKTIKAGSEMQLWLHALHRHPDHWDQPEVFDPHRF 218          
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Match: A0A7S0P7C3_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P7C3_CAFRO)

HSP 1 Score: 106 bits (265), Expect = 1.130e-24
Identity = 64/152 (42.11%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    1 RDFVTEMLKAGWEFDEIWREVNHLHGAHKAVAFVQQGAIFELTRPTAAKWVPLLREEWERELGD---------RVPTVDDVRRGKLPITHAVIKEATRRHVVTLGTPRRLGKDITLQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF 429
            +D +  M  AG+   E+  EVNH+HGAHKA  F     ++ L +P  A+WV  LR EWE  LG            P+  DV+  KL +T AVIKE  R HVV+L T R+ G  IT+ G T+P GTEI +A+  +H  PD +  P  F P R+
Sbjct:  149 KDGLRSMWLAGFGAHEMAAEVNHVHGAHKAAGFSIACMLWRLAQPCNAEWVGRLRAEWEAVLGKAPAGSKGFTNAPSRSDVK--KLTLTGAVIKEVMRLHVVSLCTGRQTGLPITVDGVTLPPGTEIGIALQAMHTHPDHFSRPNEFCPERW 298          
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Match: A0A5A8E123_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E123_CAFRO)

HSP 1 Score: 106 bits (265), Expect = 3.590e-24
Identity = 64/152 (42.11%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    1 RDFVTEMLKAGWEFDEIWREVNHLHGAHKAVAFVQQGAIFELTRPTAAKWVPLLREEWERELGD---------RVPTVDDVRRGKLPITHAVIKEATRRHVVTLGTPRRLGKDITLQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF 429
            +D +  M  AG+   E+  EVNH+HGAHKA  F     ++ L +P  A+WV  LR EWE  LG            P+  DV+  KL +T AVIKE  R HVV+L T R+ G  IT+ G T+P GTEI +A+  +H  PD +  P  F P R+
Sbjct:  294 KDGLRSMWLAGFGAHEMAAEVNHVHGAHKAAGFSIACMLWRLAQPCNAEWVGRLRAEWEAVLGKAPAGSKGFTNAPSRSDVK--KLTLTGAVIKEVMRLHVVSLCTGRQTGLPITVDGVTLPPGTEIGIALQAMHTHPDHFSRPNEFCPERW 443          
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Match: UPI001FF283BB (cytochrome P450 n=1 Tax=Telluribacter sp. SYSU D00476 TaxID=2811430 RepID=UPI001FF283BB)

HSP 1 Score: 92.4 bits (228), Expect = 3.340e-19
Identity = 49/143 (34.27%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    4 DFVTEMLKAGWEFDEIWREVNHLHGAHKAVAFVQQGAIFELTRPTAAKWVPLLREEWERELG-DRVPTVDDVRRGKLPITHAVIKEATRRHVVTLGTPRRLGKDITLQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF 429
            +++  + + G+  +E+  EVNHL+GA+ A+ +   GA +EL+R    +W  LLR E    LG +  PT D  +   LP T   ++E  R + V++G  RR G+++ +   T+P G E+++ +  +HH PD W +P TF+P R+
Sbjct:  232 NWIHCLRETGFTNEEVTHEVNHLYGAYNALDYAFTGAFYELSRHP--QWALLLRNELAEVLGPEGYPTRDTFQ--ALPHTLRFMREVFRCYPVSMGVSRRTGEELRVGELTLPAGQEVLILLHALHHHPDYWDQPDTFDPDRW 370          
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Match: A0A2T1C075_9CYAN (Uncharacterized protein n=1 Tax=Merismopedia glauca CCAP 1448/3 TaxID=1296344 RepID=A0A2T1C075_9CYAN)

HSP 1 Score: 84.0 bits (206), Expect = 3.510e-16
Identity = 46/149 (30.87%), Postives = 77/149 (51.68%), Query Frame = 1
Query:    4 DFVTEMLKAGWEFDEIWREVNHLHGAHKAVAFVQQGAIFELTRPTAAKWVPLLREEWERELGDRV-PT------VDDVRRGKLPITHAVIKEATRRHVVTLGTPRRLGKDITLQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF 429
            D++  + K+G   +EI   +NHL+GA  A+ F    A + L+      W+  LR E++  + +   PT        + R   L  T   ++E  R + V +   R+ G+ I L G+ IP GTE+++ ++ +HH PD W  P TF+P R+
Sbjct:  227 DWLNNLQKSGLSLNEITNHINHLYGAFNAIDFSLTCAFYVLSHQP--DWIKRLRSEFDLVMEENACPTRVGAASPKETRFPSLVQTTYFMREVFRMYPVAMAVMRQTGEAIELDGEVIPAGTEVMILLYALHHHPDFWENPETFDPDRW 373          
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Match: A0A137QAR5_9AGAR (Cytochrome P450 2F5 n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QAR5_9AGAR)

HSP 1 Score: 75.1 bits (183), Expect = 1.080e-13
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  166 EEWERELG-DRVPTVDDVRRGKLPITHAVIKEATR-RHVVTLGTPRRLGKDITLQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF 429
            EE +  +G DR+PT +D +   LP  HA+IKE  R R+   LGTP    +D T +G+ IPK T ++   +T+HH P  +PEPFTF P R+
Sbjct:   53 EELDSVIGRDRLPTAEDEK--DLPYIHAIIKEVERYRNPFWLGTPHVNTRDFTYRGQFIPKDTVLITNTYTMHHNPQRYPEPFTFNPDRY 140          
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Match: A0A137Q8E5_9AGAR (3-hydroxyphenylacetate 6-hydroxylase n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137Q8E5_9AGAR)

HSP 1 Score: 76.6 bits (187), Expect = 1.460e-13
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  166 EEWERELG-DRVPTVDDVRRGKLPITHAVIKEATRRH-VVTLGTPRRLGKDITLQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF 429
            EE +R +G DR+PTV+DV+   LP   A+IKE  RRH  + LGTP    +D T +G+ IPK T ++   +T+HH P  +PEPF+F P R+
Sbjct:  348 EELDRVVGRDRLPTVEDVK--DLPYISAIIKEVERRHNPLWLGTPHVNTQDFTYRGQFIPKDTLLISNTYTMHHDPQHYPEPFSFNPDRY 435          
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Match: A0A072P4T2_9EURO (Uncharacterized protein n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072P4T2_9EURO)

HSP 1 Score: 74.3 bits (181), Expect = 9.370e-13
Identity = 50/155 (32.26%), Postives = 72/155 (46.45%), Query Frame = 1
Query:   13 TEMLKAGWEFDEIWREVNHLHGAHKAVAFVQQGAIFELTRPTAA--------------KWVPLLREEWERELG-DRVPTVDDVRRGKLPITHAVIKEATRRHVVTLG-TPRRLGKDITLQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF 429
             E  KAG  F  +W E     G          G ++     T A              +W+ L++EE +R +G +R+P  DD+   +LP   AV+KE  R   VT G  P +   D    G  IPKG+ I   ++ IHH P+L+PEP+ F P R+
Sbjct:  262 VENGKAGPSFTRMWLENKQKFGLSDLQGTYVLGGLYSAAASTTASLAMSWVLLMVRNPEWLGLMQEELDRVVGPNRLPVFDDL--PQLPTVRAVVKEVARMRPVTAGGIPHKTTADDVYGGCFIPKGSMIHPNLWAIHHDPELYPEPYKFNPNRW 414          
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Match: A0A8H5HB69_9AGAR (Uncharacterized protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HB69_9AGAR)

HSP 1 Score: 74.3 bits (181), Expect = 1.020e-12
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  169 EWERELG-DRVPTVDDVRRGKLPITHAVIKEATRRH-VVTLGTPRRLGKDITLQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF 429
            E +R +G DR+PTV+D +   LP  HA+IKE  R H    LGTP    +D+T +G  IPK T IV+  +T+HH P  +P+P TF+P R+
Sbjct:  347 ELDRVVGRDRLPTVEDEK--DLPYIHAIIKEVERCHNPFWLGTPHVNTEDVTYRGHFIPKDTVIVMNTYTMHHNPQRYPDPHTFDPERY 433          
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Match: A0A1C7NA34_9FUNG (Leukotriene-B(4) omega-hydroxylase 2 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NA34_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 1.290e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:    1 RDFVTEMLKAGWEFDEIWREVNHLHG--------AHKAVAFVQQGAIFELTRPTAAKWVPLLREEWERE----LGDR----VPTVDDVRRGKLPITHAVIKEATRRHVVTLGTPRRLG-KDITLQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF 429
            +D +T M+++G    E    V+ L           H   A     A++EL +       P L+E+  +E    LGD     +PT++  +  ++   + VIKE  RRH     T  R+  +D+ L G  IPKG+E+ V I+ +HH PD+W +P+ F+P RF
Sbjct:  318 KDLLTLMIESGLSEGEDKLSVDELRSNLCIFFLAGHDTTANTLAFALYELAKN------PELQEKARKEALEILGDAPEDVIPTIEQTK--QMTYINMVIKETMRRHTPVYSTTNRVALEDLELAGNYIPKGSELSVDIYNLHHNPDVWHDPYQFKPERF 469          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124469.4978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BG03_9DINO9.880e-2740.56Cyp3a18 protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
A0A7S0P7C3_CAFRO1.130e-2442.11Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A5A8E123_CAFRO3.590e-2442.11Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
UPI001FF283BB3.340e-1934.27cytochrome P450 n=1 Tax=Telluribacter sp. SYSU D00... [more]
A0A2T1C075_9CYAN3.510e-1630.87Uncharacterized protein n=1 Tax=Merismopedia glauc... [more]
A0A137QAR5_9AGAR1.080e-1344.44Cytochrome P450 2F5 n=1 Tax=Leucoagaricus sp. SymC... [more]
A0A137Q8E5_9AGAR1.460e-1346.673-hydroxyphenylacetate 6-hydroxylase n=1 Tax=Leuco... [more]
A0A072P4T2_9EURO9.370e-1332.26Uncharacterized protein n=1 Tax=Exophiala aquamari... [more]
A0A8H5HB69_9AGAR1.020e-1246.07Uncharacterized protein n=1 Tax=Tricholomella cons... [more]
A0A1C7NA34_9FUNG1.290e-1231.25Leukotriene-B(4) omega-hydroxylase 2 n=1 Tax=Choan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124469contigM-pyrifera_M_contig124469:83..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score101.7
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog1123277.KB893187_gene2694
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cytochrome P450
EggNOG OGs47KN0@768503,4NG9Z@976,COG2124@1,COG2124@2
COG Functional cat.Q
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size411
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.060682-CDS-M-pyrifera_M_contig124469:82..4931622815762.060682-CDS-M-pyrifera_M_contig124469:82..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124469 83..493 -
1692277557.3684583-CDS-M-pyrifera_M_contig124469:82..4931692277557.3684583-CDS-M-pyrifera_M_contig124469:82..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124469 83..493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.0758095-UTR-M-pyrifera_M_contig124469:493..5111622815762.0758095-UTR-M-pyrifera_M_contig124469:493..511Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124469 494..511 -
1692277557.3934655-UTR-M-pyrifera_M_contig124469:493..5111692277557.3934655-UTR-M-pyrifera_M_contig124469:493..511Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124469 494..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124469.4978.1prot_M-pyrifera_M_contig124469.4978.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124469 83..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124469.4978.1

>prot_M-pyrifera_M_contig124469.4978.1 ID=prot_M-pyrifera_M_contig124469.4978.1|Name=mRNA_M-pyrifera_M_contig124469.4978.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MLKAGWEFDEIWREVNHLHGAHKAVAFVQQGAIFELTRPTAAKWVPLLRE
EWERELGDRVPTVDDVRRGKLPITHAVIKEATRRHVVTLGTPRRLGKDIT
LQGKTIPKGTEIVVAIFTIHHRPDLWPEPFTFEPGRF
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mRNA from alignment at M-pyrifera_M_contig124469:83..511-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124469.4978.1 ID=mRNA_M-pyrifera_M_contig124469.4978.1|Name=mRNA_M-pyrifera_M_contig124469.4978.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig124469:83..511- (Macrocystis pyrifera P11B4 male)
CGGGATTTTGTGACGGAGATGCTCAAGGCTGGGTGGGAGTTTGACGAGAT TTGGAGGGAAGTGAACCACTTGCATGGTGCCCACAAGGCAGTGGCGTTTG TGCAGCAAGGTGCTATTTTCGAGTTGACCCGTCCCACTGCAGCCAAGTGG GTGCCATTGTTGCGTGAGGAGTGGGAGAGAGAGCTTGGGGATCGTGTGCC AACAGTGGATGATGTGAGGCGAGGCAAGCTGCCCATCACACATGCGGTGA TCAAGGAGGCCACGCGGCGACATGTAGTGACTCTGGGGACGCCGCGGCGG CTGGGCAAGGACATCACGCTGCAAGGCAAGACCATCCCGAAAGGCACGGA GATTGTGGTGGCCATTTTCACCATCCACCACCGACCTGACCTCTGGCCCG AACCATTCACGTTTGAACCCGGCCGGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124469:83..511-

>mRNA_M-pyrifera_M_contig124469.4978.1 ID=mRNA_M-pyrifera_M_contig124469.4978.1|Name=mRNA_M-pyrifera_M_contig124469.4978.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig124469:83..511- (Macrocystis pyrifera P11B4 male)
ATGCTCAAGGCTGGGTGGGAGTTTGACGAGATTTGGAGGGAAGTGAACCA
CTTGCATGGTGCCCACAAGGCAGTGGCGTTTGTGCAGCAAGGTGCTATTT
TCGAGTTGACCCGTCCCACTGCAGCCAAGTGGGTGCCATTGTTGCGTGAG
GAGTGGGAGAGAGAGCTTGGGGATCGTGTGCCAACAGTGGATGATGTGAG
GCGAGGCAAGCTGCCCATCACACATGCGGTGATCAAGGAGGCCACGCGGC
GACATGTAGTGACTCTGGGGACGCCGCGGCGGCTGGGCAAGGACATCACG
CTGCAAGGCAAGACCATCCCGAAAGGCACGGAGATTGTGGTGGCCATTTT
CACCATCCACCACCGACCTGACCTCTGGCCCGAACCATTCACGTTTGAAC
CCGGCCGGTTCATGCTCAAGGCTGGGTGGGAGTTTGACGAGATTTGGAGG
GAAGTGAACCACTTGCATGGTGCCCACAAGGCAGTGGCGTTTGTGCAGCA
AGGTGCTATTTTCGAGTTGACCCGTCCCACTGCAGCCAAGTGGGTGCCAT
TGTTGCGTGAGGAGTGGGAGAGAGAGCTTGGGGATCGTGTGCCAACAGTG
GATGATGTGAGGCGAGGCAAGCTGCCCATCACACATGCGGTGATCAAGGA
GGCCACGCGGCGACATGTAGTGACTCTGGGGACGCCGCGGCGGCTGGGCA
AGGACATCACGCTGCAAGGCAAGACCATCCCGAAAGGCACGGAGATTGTG
GTGGCCATTTTCACCATCCACCACCGACCTGACCTCTGGCCCGAACCATT
CACGTTTGAACCCGGCCGGTTC
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