mRNA_M-pyrifera_M_contig124198.4925.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124198.4925.1
Unique NamemRNA_M-pyrifera_M_contig124198.4925.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124198.4925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124198contigM-pyrifera_M_contig124198:76..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.9
Seed ortholog evalue5.7e-10
Seed eggNOG ortholog2340.JV46_26760
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Autotransporter beta-domain
EggNOG OGs1QUQQ@1224,2DYHU@1,349T1@2
COG Functional cat.S
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.3486526-CDS-M-pyrifera_M_contig124198:75..5101622815759.3486526-CDS-M-pyrifera_M_contig124198:75..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124198 76..510 -
1692277556.0800369-CDS-M-pyrifera_M_contig124198:75..5101692277556.0800369-CDS-M-pyrifera_M_contig124198:75..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124198 76..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124198.4925.1prot_M-pyrifera_M_contig124198.4925.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124198 76..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124198.4925.1

>prot_M-pyrifera_M_contig124198.4925.1 ID=prot_M-pyrifera_M_contig124198.4925.1|Name=mRNA_M-pyrifera_M_contig124198.4925.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
ADFGGFLVRPGLVVSTDIPMANGITLTPNAGLRYAAQWLGGYSETGAVNP
AANATVDARFVGVLEARAALEVSRAHDFGVLSGRIGYLGRWNGGNEVAGI
TLNGSTQDVASGYQALNAVTVGATLRSDIGETGFLELDADYLYGD
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mRNA from alignment at M-pyrifera_M_contig124198:76..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124198.4925.1 ID=mRNA_M-pyrifera_M_contig124198.4925.1|Name=mRNA_M-pyrifera_M_contig124198.4925.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig124198:76..510- (Macrocystis pyrifera P11B4 male)
GCGGATTTTGGGGGGTTCCTTGTCCGGCCGGGACTTGTCGTCTCCACCGA
CATCCCGATGGCGAACGGTATCACGCTGACACCCAATGCGGGTCTGCGCT
ATGCGGCGCAGTGGCTGGGTGGCTATTCGGAGACGGGGGCTGTCAATCCG
GCGGCGAATGCGACGGTCGATGCGCGCTTTGTCGGCGTGCTGGAAGCCCG
GGCCGCGCTTGAAGTCTCGCGCGCCCATGACTTCGGCGTCCTGAGCGGCC
GGATCGGCTATCTTGGCCGCTGGAACGGCGGCAATGAAGTGGCGGGCATC
ACGCTGAACGGGTCCACACAGGATGTGGCATCTGGCTATCAGGCGCTGAA
CGCGGTCACTGTGGGCGCCACCCTGCGCAGCGACATCGGTGAAACCGGCT
TCCTCGAACTCGACGCAGACTATCTCTACGGCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124198:76..510-

>mRNA_M-pyrifera_M_contig124198.4925.1 ID=mRNA_M-pyrifera_M_contig124198.4925.1|Name=mRNA_M-pyrifera_M_contig124198.4925.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig124198:76..510- (Macrocystis pyrifera P11B4 male)
GCGGATTTTGGGGGGTTCCTTGTCCGGCCGGGACTTGTCGTCTCCACCGA
CATCCCGATGGCGAACGGTATCACGCTGACACCCAATGCGGGTCTGCGCT
ATGCGGCGCAGTGGCTGGGTGGCTATTCGGAGACGGGGGCTGTCAATCCG
GCGGCGAATGCGACGGTCGATGCGCGCTTTGTCGGCGTGCTGGAAGCCCG
GGCCGCGCTTGAAGTCTCGCGCGCCCATGACTTCGGCGTCCTGAGCGGCC
GGATCGGCTATCTTGGCCGCTGGAACGGCGGCAATGAAGTGGCGGGCATC
ACGCTGAACGGGTCCACACAGGATGTGGCATCTGGCTATCAGGCGCTGAA
CGCGGTCACTGTGGGCGCCACCCTGCGCAGCGACATCGGTGAAACCGGCT
TCCTCGAACTCGACGCAGACTATCTCTACGGCGACGCGGATTTTGGGGGG
TTCCTTGTCCGGCCGGGACTTGTCGTCTCCACCGACATCCCGATGGCGAA
CGGTATCACGCTGACACCCAATGCGGGTCTGCGCTATGCGGCGCAGTGGC
TGGGTGGCTATTCGGAGACGGGGGCTGTCAATCCGGCGGCGAATGCGACG
GTCGATGCGCGCTTTGTCGGCGTGCTGGAAGCCCGGGCCGCGCTTGAAGT
CTCGCGCGCCCATGACTTCGGCGTCCTGAGCGGCCGGATCGGCTATCTTG
GCCGCTGGAACGGCGGCAATGAAGTGGCGGGCATCACGCTGAACGGGTCC
ACACAGGATGTGGCATCTGGCTATCAGGCGCTGAACGCGGTCACTGTGGG
CGCCACCCTGCGCAGCGACATCGGTGAAACCGGCTTCCTCGAACTCGACG
CAGACTATCTCTACGGCGAC
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