mRNA_M-pyrifera_M_contig123857.4882.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123857.4882.1
Unique NamemRNA_M-pyrifera_M_contig123857.4882.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Match: A0A7S2DMU5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DMU5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 9.130e-31
Identity = 69/149 (46.31%), Postives = 96/149 (64.43%), Query Frame = 1
Query:    1 LPVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERFGVRIRGGVRGSVR---DKAIPIAQHYKFTLQTALEVAAPLSPGVIVLEDDFVVSPDFYEYFHAAALALDADPSLWLASAWHDNGFAHTLGPGDEVALWR 438
            LP+A++AA R +ML +TL S+L+ RG    DV+V+QDG N  V  VA  FG+     +RG +R   D A  IA HYK+ LQ AL+ ++P SPG+IV+EDDF+ SPDF +YF A    L+ DP+ ++ SAW+DNG    +   D+  L R
Sbjct:   73 LPIAILAANRPDMLRETLESLLKARGARRGDVLVLQDGDNAGVAQVARSFGIEPVFHMRGHLRVHMDGAERIASHYKWALQHALD-SSPSSPGIIVVEDDFLFSPDFIDYFKAVGPLLERDPTTFVVSAWNDNGLKDRVW--DKARLCR 218          
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Match: A0A482RN70_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RN70_9ARCH)

HSP 1 Score: 118 bits (295), Expect = 1.720e-29
Identity = 57/129 (44.19%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 LPVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERFGVRIRGGVRGSVR--DKAIPIAQHYKFTLQTALEVAAPLSPGVIVLEDDFVVSPDFYEYFHAAALALDADPSLWLASAW 381
            LP+ ++A +R +M+++TL ++L+ RG+ A DV V+QDG +  V  V +  GV +      +    D ++ IA H+K+++Q A    AP +PG+I++EDDF+ S DFYEYFHA A  L+AD +LWLASAW
Sbjct:  178 LPILLIAGKRADMVKKTLDALLKVRGVQARDVAVLQDGTDAGVESVVKAAGVFLHQHRDNTAAPGDHSVAIAMHFKYSIQYAFSSFAPAAPGLIIVEDDFLFSDDFYEYFHAVAPVLEADKTLWLASAW 306          
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Match: A0A7S2STA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STA6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.380e-27
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    1 LPVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERFG---VRIRGGVRGSVRDKAIPIAQHYKFTLQTALEVAAPLSPGVIVLEDDFVVSPDFYEYFHAAALALDADPSLWLASAWHDNGFAHTLGPGDEVALWR 438
            LP+AV+ A R EML  TL S+L+ RG+   D++V QDG +  V   A+  G   ++    +RG   D    IA HYKFTL  A     P +P ++V+EDDF  SPDF EYF + A  L+ DP+ ++ S+W+DNG A  +   D  AL R
Sbjct:    8 LPIAVLTANRPEMLHDTLLSLLQVRGVRQQDILVFQDGTDPEVARTAKGLGFPPIQHIHNLRGRRMDGGQLIAAHYKFTLSEAFS-RRPEAPALVVVEDDFRFSPDFLEYFRSVAPILERDPTTYVISSWNDNGLAGKVS--DSRALQR 153          
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Match: A0A7S4EA16_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EA16_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.290e-26
Identity = 67/139 (48.20%), Postives = 84/139 (60.43%), Query Frame = 1
Query:    4 PVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERFGVRIRGGVRGSVR-DKAIPIAQHYKFTLQTALEVAAPLSPGVIVLEDDFVVSPDFYEYFHAAALALDADPSLWLASAWHDNGFAHTLGPG 417
            PV V+A +R E L   L+S++   G  A D++V QDG N AV  V   FGV  +      V  D A  IA+ YKF L  A E   P +P VIV+EDD VVS DF++YF A A AL+ D SL++ASAW+DNGFA    PG
Sbjct:  152 PVVVIACDRTETLRNALTSLMAA-GASAQDILVAQDGANSAVAAVVAEFGVSHKAKRPPLVPLDGAQHIARTYKFALTRAFEDVFPGAPAVIVVEDDLVVSKDFFDYFSAVAPALERDDSLFVASAWNDNGFAKHGDPG 289          
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Match: A0A6S8E5K5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8E5K5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.400e-25
Identity = 61/134 (45.52%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 LPVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERFGVRIR-GGVRGSVRDKAIPIAQHYKFTLQTALEVAAPLSPGVIVLEDDFVVSPDFYEYFH-AAALALDADPSLWLASAWHDNGF 396
            LPV ++A  R   + + LSS+L   GI  +D+ V QDG + AV  VA+ FGV++R  G++   RD A  IA +Y   L+ A+E   P +PGVI++EDD + SPDF +YF+  AA  LD DP++++ SAW+DNGF
Sbjct:   50 LPVVMLACNRPIAMREALSSLLNA-GIQVEDIAVAQDGTDAAVTAVAKEFGVQVRRNGLQHGHRDGAARIAANYGDALRWAIEERFPEAPGVIIVEDDLLFSPDFGQYFNEVAAPLLDTDPTVFVVSAWNDNGF 182          
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Match: A0A2R5G123_9STRA (Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G123_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.420e-24
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 1
Query:    4 PVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERFGVRI--RGGVRGSVRDKAIP---IAQHYKFTLQTALEVAAPLSPGVIVLEDDFVVSPDFYEYFHAAALALDADPSLWLASAWHDNGFA 399
            PV ++   RE+ +  TL S+ + RGI    V+V+QDG  + V  V    GV +  RG        +  P   IAQHYKF L  A+   A  +PG+I++EDDF+ SPDF EYF   A A+  DP+LWLASAW+DNGFA
Sbjct:  179 PVVLLCYNREKRVRDTLESLFQVRGIQKSLVLVVQDGQYEPVSQVVLEAGVELVQRGPEMVDAEQRKDPGARIAQHYKFALGYAMSHFAD-APGIIIIEDDFLFSPDFVEYFSTVAPAIIKDPTLWLASAWNDNGFA 314          
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Match: A0A8J6C6R5_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C6R5_DIALT)

HSP 1 Score: 106 bits (264), Expect = 4.210e-24
Identity = 57/138 (41.30%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    4 PVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERFGVRIR-------GGVRGSVRDKAIPIAQHYKFTLQTALEVAAPLSPGVIVLEDDFVVSPDFYEYFHAAALALDADPSLWLASAWHDNGF 396
            P+ +   +R ++LE+TL+S+L  R + AD VV  QDG N+AVR V ERF +  R          RG  R+ A  IAQHYK+ ++ A       +  ++++EDD + +PDF EYF A A  L+ DP+LW  SA++DNG+
Sbjct:   63 PILLFCNKRPDLLERTLNSLLAVRAVTADRVVASQDGPNNAVRAVLERFELAARFVHTKALRDERGRQREGAALIAQHYKWAIKRAFAHFGASAQHLVIVEDDMLFAPDFMEYFAALAPLLEDDPTLWTVSAFNDNGY 200          
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Match: A0A812K4I4_9DINO (GNTI protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812K4I4_9DINO)

HSP 1 Score: 104 bits (260), Expect = 1.260e-23
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 LPVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERFGV-RIRGGVRGSV----RDKAIPIAQHYKFTLQTALEVAAPLSPGVIVLEDDFVVSPDFYEYFHAAALALDADPSLWLASAWHDNGFAHTL 408
            LPV ++A  R E L +TL S+   RG   +D++V QDG ++ V  V +   + RI    +  V    R  A+ IA+HY++++  A +     +PG+I++EDD   SPDF EYF AAA  LD D +LW+ SAW+DNGF H +
Sbjct:   93 LPVLLLAHRRAERLLETLRSLAGVRGFSVNDILVSQDGSDEEVAKVVDSMNISRISHDAKPPVNSGWRSAALRIARHYRWSIDAAFKHFNH-TPGIIIVEDDLRFSPDFLEYFQAAAPVLDCDSTLWIVSAWNDNGFDHLV 232          
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Match: A0A7S1GCK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCK1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.430e-23
Identity = 59/138 (42.75%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    4 PVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERFGVRI-----RGGVRGSV-RDKAIPIAQHYKFTLQTALEVAAPLSPGVIVLEDDFVVSPDFYEYFHAAALALDADPSLWLASAWHDNGFA 399
            PV V+   R  +L++TL S+   RG+  D + V+QDG   AV  V    G+R+     +  +RG V  D A  IA+HYK++L          +P +I+ EDDF+ +PDF EYF A A  L++DP+L+LASAW+DNGFA
Sbjct:    3 PVVVLTCNRAGLLDRTLLSLEEVRGVDDDLITVVQDGKVAAVEQVVRDHGLRLHQHEAKTNMRGGVPADGARRIAEHYKYSLDYMFSTTT--APAIIIAEDDFLFAPDFLEYFMAVAPLLESDPTLFLASAWNDNGFA 138          
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Match: A0A813CNS4_9DINO (RPS13 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CNS4_9DINO)

HSP 1 Score: 105 bits (261), Expect = 1.920e-23
Identity = 59/141 (41.84%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 LPVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERFGV-RIRGGVRGSV----RDKAIPIAQHYKFTLQTALEVAAPLSPGVIVLEDDFVVSPDFYEYFHAAALALDADPSLWLASAWHDNGFAHTL 408
            LPV ++A  R E L +TL S+   RG   +DV+V QDG ++ V  V +   + RI    +  V    R  A+ IA+HY++++  A +     +PG+I++EDD   SPDF EYF AAA  LD D +LW+ SAW+DNGF H +
Sbjct:   93 LPVLLLAHRRAERLLETLRSLAGVRGFSVNDVLVSQDGSDEEVAKVVDSMNISRISHDAKPPVNSGWRSAALRIARHYRWSIDAAFKHFNH-TPGIIIVEDDLRFSPDFLEYFQAAAPVLDCDSTLWIVSAWNDNGFDHLV 232          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123857.4882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2DMU5_9STRA9.130e-3146.31Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482RN70_9ARCH1.720e-2944.19Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2STA6_9STRA4.380e-2742.28Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S4EA16_9STRA2.290e-2648.20Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6S8E5K5_9STRA2.400e-2545.52Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2R5G123_9STRA2.420e-2445.26Protein O-linked-mannose beta-1,2-N-acetylglucosam... [more]
A0A8J6C6R5_DIALT4.210e-2441.30Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A812K4I4_9DINO1.260e-2341.13GNTI protein (Fragment) n=1 Tax=Symbiodinium necro... [more]
A0A7S1GCK1_9STRA1.430e-2342.75Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A813CNS4_9DINO1.920e-2341.84RPS13 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123857contigM-pyrifera_M_contig123857:70..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score92.0
Seed ortholog evalue2.4e-16
Seed eggNOG ortholog192875.XP_004345294.1
Preferred namePOMGNT1
KEGG koko:K09666
KEGG ReactionR07619
KEGG Pathwayko00515,ko01100,map00515,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016266,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0030145,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0034645,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0047223,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity
EggNOG OGs28K1N@1,2QSG3@2759,38MEH@33154
COG Functional cat.S
CAZyGT13
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons2
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.1013262-CDS-M-pyrifera_M_contig123857:69..2311622815757.1013262-CDS-M-pyrifera_M_contig123857:69..231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123857 70..231 +
1692277555.007073-CDS-M-pyrifera_M_contig123857:69..2311692277555.007073-CDS-M-pyrifera_M_contig123857:69..231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123857 70..231 +
1622815757.1126623-CDS-M-pyrifera_M_contig123857:246..5221622815757.1126623-CDS-M-pyrifera_M_contig123857:246..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123857 247..522 +
1692277555.0205345-CDS-M-pyrifera_M_contig123857:246..5221692277555.0205345-CDS-M-pyrifera_M_contig123857:246..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123857 247..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123857.4882.1prot_M-pyrifera_M_contig123857.4882.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123857 70..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123857.4882.1

>prot_M-pyrifera_M_contig123857.4882.1 ID=prot_M-pyrifera_M_contig123857.4882.1|Name=mRNA_M-pyrifera_M_contig123857.4882.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
LPVAVVAAEREEMLEQTLSSVLRCRGIVADDVVVIQDGGNDAVRGVAERF
GVRIRGGVRGSVRDKAIPIAQHYKFTLQTALEVAAPLSPGVIVLEDDFVV
SPDFYEYFHAAALALDADPSLWLASAWHDNGFAHTLGPGDEVALWR
back to top

mRNA from alignment at M-pyrifera_M_contig123857:70..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123857.4882.1 ID=mRNA_M-pyrifera_M_contig123857.4882.1|Name=mRNA_M-pyrifera_M_contig123857.4882.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig123857:70..522+ (Macrocystis pyrifera P11B4 male)
CTGCCTGTGGCGGTGGTGGCGGCAGAGCGTGAGGAGATGCTGGAGCAGAC CCTGAGTTCCGTGTTGCGATGCCGGGGCATAGTGGCGGACGATGTGGTGG TGATCCAGGATGGGGGGAATGATGCAGTGCGTGGAGTGGCGGAGAGGTTT GGGGTGCGGATCGTGTAGCACCTGAAGCGCGGCGGCGTGCGGGGTAGCGT GCGGGATAAGGCCATTCCGATCGCGCAGCACTACAAGTTCACGCTGCAGA CTGCGCTGGAAGTAGCGGCTCCGCTGAGCCCCGGGGTGATTGTGCTGGAG GACGATTTCGTGGTCAGCCCCGATTTCTACGAGTATTTCCACGCAGCTGC CCTCGCACTGGACGCTGATCCTTCGCTGTGGCTCGCGTCGGCGTGGCACG ACAACGGGTTTGCCCACACGCTTGGCCCCGGGGACGAGGTGGCGCTCTGG CGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123857:70..522+

>mRNA_M-pyrifera_M_contig123857.4882.1 ID=mRNA_M-pyrifera_M_contig123857.4882.1|Name=mRNA_M-pyrifera_M_contig123857.4882.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig123857:70..522+ (Macrocystis pyrifera P11B4 male)
CTGCCTGTGGCGGTGGTGGCGGCAGAGCGTGAGGAGATGCTGGAGCAGAC
CCTGAGTTCCGTGTTGCGATGCCGGGGCATAGTGGCGGACGATGTGGTGG
TGATCCAGGATGGGGGGAATGATGCAGTGCGTGGAGTGGCGGAGAGGTTT
GGGGTGCGGATCCTGCCTGTGGCGGTGGTGGCGGCAGAGCGTGAGGAGAT
GCTGGAGCAGACCCTGAGTTCCGTGTTGCGATGCCGGGGCATAGTGGCGG
ACGATGTGGTGGTGATCCAGGATGGGGGGAATGATGCAGTGCGTGGAGTG
GCGGAGAGGTTTGGGGTGCGGATCCGCGGCGGCGTGCGGGGTAGCGTGCG
GGATAAGGCCATTCCGATCGCGCAGCACTACAAGTTCACGCTGCAGACTG
CGCTGGAAGTAGCGGCTCCGCTGAGCCCCGGGGTGATTGTGCTGGAGGAC
GATTTCGTGGTCAGCCCCGATTTCTACGAGTATTTCCACGCAGCTGCCCT
CGCACTGGACGCTGATCCTTCGCTGTGGCTCGCGTCGGCGTGGCACGACA
ACGGGTTTGCCCACACGCTTGGCCCCGGGGACGAGGTGGCGCTCTGGCGG
CGCGGCGGCGTGCGGGGTAGCGTGCGGGATAAGGCCATTCCGATCGCGCA
GCACTACAAGTTCACGCTGCAGACTGCGCTGGAAGTAGCGGCTCCGCTGA
GCCCCGGGGTGATTGTGCTGGAGGACGATTTCGTGGTCAGCCCCGATTTC
TACGAGTATTTCCACGCAGCTGCCCTCGCACTGGACGCTGATCCTTCGCT
GTGGCTCGCGTCGGCGTGGCACGACAACGGGTTTGCCCACACGCTTGGCC
CCGGGGACGAGGTGGCGCTCTGGCGG
back to top