mRNA_M-pyrifera_M_contig123430.4797.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123430.4797.1
Unique NamemRNA_M-pyrifera_M_contig123430.4797.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Match: A0A2E4L6W8_9BACT (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2E4L6W8_9BACT)

HSP 1 Score: 140 bits (354), Expect = 4.930e-40
Identity = 73/109 (66.97%), Postives = 94/109 (86.24%), Query Frame = 1
Query:    1 SGLKAISAVEVETGLAIGSLIVDPAFDLDAASAYNSEVLKAKMKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLGISRRIALEVGKKVEESL 327
            SGLKAISAVEVE+GL+ GSLIVD  FDLDAASAYN+EV+KAK+KAK AMGM KEKID++IIEL+SQIHLIQPT + KY++Y+AAD+S+ N+GI R++   +  +V+ +L
Sbjct:   17 SGLKAISAVEVESGLSHGSLIVDEKFDLDAASAYNAEVIKAKIKAKNAMGMQKEKIDLMIIELSSQIHLIQPTDDEKYIIYMAADKSS-NVGIVRKVMKSISGEVQSAL 124          
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Match: A0A2E8N5B4_9RICK (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2E8N5B4_9RICK)

HSP 1 Score: 139 bits (351), Expect = 1.400e-39
Identity = 70/109 (64.22%), Postives = 95/109 (87.16%), Query Frame = 1
Query:    1 SGLKAISAVEVETGLAIGSLIVDPAFDLDAASAYNSEVLKAKMKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLGISRRIALEVGKKVEESL 327
            SGLKAISAVEVETGL+ GS+IVD  FDLDAASAYN+EV+KAK++AK AMGM KEKI++++IEL+SQIHLIQPT N K+++Y+A+D+ST N+GI+R++   +   V+++L
Sbjct:   17 SGLKAISAVEVETGLSHGSVIVDEKFDLDAASAYNAEVIKAKIRAKNAMGMQKEKIELMLIELSSQIHLIQPTDNEKFIIYMASDKST-NIGITRKVIKSISGDVQKAL 124          
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Match: A0A3G2GNX2_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium sp. 140616W15 TaxID=2478552 RepID=A0A3G2GNX2_9FLAO)

HSP 1 Score: 97.4 bits (241), Expect = 5.670e-23
Identity = 50/109 (45.87%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 SGLKAISAVEVETGLAIGSLIVDPAFDLDAASAYNSEVLKAKMKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLGISRRIALEVGKKVEESL 327
            SG  A+S  EVETG++  SL +DP FD + ASAYN EV+KAKM A KA+G++ +KI+ I+I LT+Q+H+I  + + KY +Y+A D +  NLG++R +  +  K +   L
Sbjct:   17 SGFIAVSVTEVETGMSYSSLSLDPNFDPELASAYNLEVVKAKMNAIKALGLN-QKINDILITLTNQLHIIDVSDDEKYFIYLAVDSTKANLGMTRAVLAKFKKDISSKL 124          
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Match: J1KTI6_9FLAO (Uncharacterized protein n=78 Tax=Flavobacteriaceae TaxID=49546 RepID=J1KTI6_9FLAO)

HSP 1 Score: 97.1 bits (240), Expect = 8.470e-23
Identity = 48/109 (44.04%), Postives = 81/109 (74.31%), Query Frame = 1
Query:    1 SGLKAISAVEVETGLAIGSLIVDPAFDLDAASAYNSEVLKAKMKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLGISRRIALEVGKKVEESL 327
            +G  A++  E+E+GL+ G+L +DP+FD + A+AYN EV+KAK+ A KA+G++++ I+ I+I L++QIH+I  + N K+++Y+AAD S  NLG++R I  +    VE++L
Sbjct:   18 NGFIAVAVTEIESGLSFGNLTIDPSFDPELAAAYNLEVVKAKLNAVKALGLNQD-IEDILITLSNQIHIIDISPNKKFMIYLAADASKANLGMTRAILRKHKADVEKNL 125          
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Match: A0A0D6TNM1_9FLAO (Uncharacterized protein n=2 Tax=Flavobacterium TaxID=237 RepID=A0A0D6TNM1_9FLAO)

HSP 1 Score: 95.9 bits (237), Expect = 2.260e-22
Identity = 48/109 (44.04%), Postives = 78/109 (71.56%), Query Frame = 1
Query:    1 SGLKAISAVEVETGLAIGSLIVDPAFDLDAASAYNSEVLKAKMKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLGISRRIALEVGKKVEESL 327
            +G  A++  EV+TG++  SL + P+FD + ASAYN EV+KAKM A KA+G+ KEKI+ I+I L++QIH+I  ++N +Y +Y+A D S  NLG++R +  +  +++E  +
Sbjct:   17 AGFIAVAVTEVKTGMSYKSLSIQPSFDPELASAYNLEVVKAKMTAIKALGL-KEKIEDIMITLSNQIHIISVSANEEYFIYLAVDSSKANLGMTRAMLKKYSREIESKM 124          
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Match: J3C210_FLASC (Uncharacterized protein n=1 Tax=Flavobacterium sp. (strain CF136) TaxID=1144313 RepID=J3C210_FLASC)

HSP 1 Score: 94.4 bits (233), Expect = 9.020e-22
Identity = 47/109 (43.12%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 SGLKAISAVEVETGLAIGSLIVDPAFDLDAASAYNSEVLKAKMKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLGISRRIALEVGKKVEESL 327
            +G  A+S  E+ETG++  SL VD +FD + ASAYN EV+KAKM A KA+G++ EKI+ I+I L++Q+H++  + + KY +Y+A D    NLG++R +  +  K++   L
Sbjct:   17 NGFIAVSVTEIETGMSYSSLSVDSSFDPELASAYNLEVVKAKMNAIKALGLN-EKINDILITLSNQLHILDVSEDGKYFIYLAVDSKNANLGLTRAVLSKFKKEIVSKL 124          
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Match: UPI0010758A56 (hypothetical protein n=1 Tax=Flavobacterium foetidum TaxID=2026681 RepID=UPI0010758A56)

HSP 1 Score: 93.6 bits (231), Expect = 1.800e-21
Identity = 49/109 (44.95%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 SGLKAISAVEVETGLAIGSLIVDPAFDLDAASAYNSEVLKAKMKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLGISRRIALEVGKKVEESL 327
            +G  A+S  EVETG+A  SL VDP FD + ASAYN EV+KAKM A KA+G++ +KI+ I+I L+ Q+H+I  + + +Y +Y+A D +  NLG++R    +  K +   L
Sbjct:   17 NGFIAVSVTEVETGMAYCSLTVDPDFDPELASAYNLEVVKAKMNAIKALGLN-QKINDILISLSDQLHIIDVSDDGRYFIYLAVDATKANLGLTRATLSKYKKDITSKL 124          
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Match: A0A0Q0W2X8_9FLAO (Uncharacterized protein n=26 Tax=Flavobacterium TaxID=237 RepID=A0A0Q0W2X8_9FLAO)

HSP 1 Score: 92.4 bits (228), Expect = 5.080e-21
Identity = 49/109 (44.95%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 SGLKAISAVEVETGLAIGSLIVDPAFDLDAASAYNSEVLKAKMKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLGISRRIALEVGKKVEESL 327
            +G  A+S  EVETG++  SL ++P FD + ASAYN EV+KAK+ A KA+G+D +KI+ I+I LT QIH+I  + + KY +Y+A D +  NLG++R    +  K +   L
Sbjct:   17 NGFIAVSVTEVETGMSYCSLSLNPNFDPELASAYNLEVVKAKLNAIKALGLD-QKINDILITLTDQIHIIDVSEDGKYFIYLAVDSTKANLGLTRATLAKFKKDIISKL 124          
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Match: A0A086AUJ7_FLAHY (Uncharacterized protein n=4 Tax=Flavobacterium TaxID=237 RepID=A0A086AUJ7_FLAHY)

HSP 1 Score: 92.4 bits (228), Expect = 5.360e-21
Identity = 47/109 (43.12%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 SGLKAISAVEVETGLAIGSLIVDPAFDLDAASAYNSEVLKAKMKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLGISRRIALEVGKKVEESL 327
            +G  A++  E+ETGL+ G++ +D AFD + ASAYN EV+KAK+ A KA+ + K+ I+ I+I LT+QIH+I  + N K++VY+ AD +  NLG++R +  +    +E++L
Sbjct:   18 NGFIAVAVTEIETGLSYGNISIDSAFDPELASAYNLEVVKAKLSAVKALNL-KQDIEDILITLTNQIHIIDISPNNKFMVYLVADSTKANLGMTRAVLRKYKTDLEKNL 125          
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Match: A0A2E4PH30_FLASP (Uncharacterized protein n=3 Tax=Flavobacterium TaxID=237 RepID=A0A2E4PH30_FLASP)

HSP 1 Score: 92.0 bits (227), Expect = 7.170e-21
Identity = 49/109 (44.95%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 SGLKAISAVEVETGLAIGSLIVDPAFDLDAASAYNSEVLKAKMKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLGISRRIALEVGKKVEESL 327
            +G  A++  EV+TG++  SL V+ +FD + ASAYN EV+KAKM A KA+G+ KE I+ I+I L++QIH+I  + N +Y +Y+A D S  NLG+SR I     K++   +
Sbjct:   17 AGFIAVAVTEVKTGMSYKSLSVNSSFDPELASAYNLEVVKAKMTAIKALGL-KENIEDIMITLSNQIHIISISENGEYFIYLAVDSSKANLGMSRAILKRYSKEIASKM 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123430.4797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E4L6W8_9BACT4.930e-4066.97Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
A0A2E8N5B4_9RICK1.400e-3964.22Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
A0A3G2GNX2_9FLAO5.670e-2345.87Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
J1KTI6_9FLAO8.470e-2344.04Uncharacterized protein n=78 Tax=Flavobacteriaceae... [more]
A0A0D6TNM1_9FLAO2.260e-2244.04Uncharacterized protein n=2 Tax=Flavobacterium Tax... [more]
J3C210_FLASC9.020e-2243.12Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
UPI0010758A561.800e-2144.95hypothetical protein n=1 Tax=Flavobacterium foetid... [more]
A0A0Q0W2X8_9FLAO5.080e-2144.95Uncharacterized protein n=26 Tax=Flavobacterium Ta... [more]
A0A086AUJ7_FLAHY5.360e-2143.12Uncharacterized protein n=4 Tax=Flavobacterium Tax... [more]
A0A2E4PH30_FLASP7.170e-2144.95Uncharacterized protein n=3 Tax=Flavobacterium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123430contigM-pyrifera_M_contig123430:3..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123430.4797.1prot_M-pyrifera_M_contig123430.4797.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123430 129..335 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.915689-UTR-M-pyrifera_M_contig123430:2..1281622815752.915689-UTR-M-pyrifera_M_contig123430:2..128Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123430 3..128 +
1692277553.1224523-UTR-M-pyrifera_M_contig123430:2..1281692277553.1224523-UTR-M-pyrifera_M_contig123430:2..128Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123430 3..128 +
1622815752.94939-UTR-M-pyrifera_M_contig123430:335..5221622815752.94939-UTR-M-pyrifera_M_contig123430:335..522Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123430 336..522 +
1692277553.1402552-UTR-M-pyrifera_M_contig123430:335..5221692277553.1402552-UTR-M-pyrifera_M_contig123430:335..522Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123430 336..522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.936464-CDS-M-pyrifera_M_contig123430:128..3351622815752.936464-CDS-M-pyrifera_M_contig123430:128..335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123430 129..335 +
1692277553.1320438-CDS-M-pyrifera_M_contig123430:128..3351692277553.1320438-CDS-M-pyrifera_M_contig123430:128..335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123430 129..335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123430.4797.1

>prot_M-pyrifera_M_contig123430.4797.1 ID=prot_M-pyrifera_M_contig123430.4797.1|Name=mRNA_M-pyrifera_M_contig123430.4797.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
MKAKKAMGMDKEKIDIIIIELTSQIHLIQPTSNAKYLVYIAADRSTTNLG
ISRRIALEVGKKVEESLK*
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mRNA from alignment at M-pyrifera_M_contig123430:3..522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123430.4797.1 ID=mRNA_M-pyrifera_M_contig123430.4797.1|Name=mRNA_M-pyrifera_M_contig123430.4797.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=520bp|location=Sequence derived from alignment at M-pyrifera_M_contig123430:3..522+ (Macrocystis pyrifera P11B4 male)
TCAGGATTAAAAGCTATCTCTGCCGTTGAAGTGGAGACAGGACTCGCGAT TGGATCATTGATTGTTGATCCGGCATTTGACCTGGATGCTGCAAGCGCTT ATAATTCTGAAGTTCTCAAAGCTAAGATGAAGGCTAAAAAAGCGATGGGA ATGGACAAAGAGAAGATCGACATCATCATCATAGAACTCACTTCTCAAAT TCACTTGATCCAGCCGACATCAAACGCTAAGTATCTGGTTTATATTGCTG CTGATCGCTCCACCACCAACCTTGGAATTTCAAGAAGAATAGCGCTGGAG GTTGGCAAAAAAGTCGAAGAAAGTCTCAAGTAATCAACCTTCCTTAAGAT TGGATTCAAGCATTCTTTCAGATTCGCGGGAGATACACAAAGCATTGTTA CCACCGGTTGAAAAGTTCAAATATGGCTTGTCGGATGTAGAAATCTATTC CAGGCCATACGTTGAACCAGGTGGCGATTTTTATTGGTGCAAGCATTTTC AATATCAATCAGTCTATGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123430:3..522+

>mRNA_M-pyrifera_M_contig123430.4797.1 ID=mRNA_M-pyrifera_M_contig123430.4797.1|Name=mRNA_M-pyrifera_M_contig123430.4797.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig123430:3..522+ (Macrocystis pyrifera P11B4 male)
ATGAAGGCTAAAAAAGCGATGGGAATGGACAAAGAGAAGATCGACATCAT
CATCATAGAACTCACTTCTCAAATTCACTTGATCCAGCCGACATCAAACG
CTAAGTATCTGGTTTATATTGCTGCTGATCGCTCCACCACCAACCTTGGA
ATTTCAAGAAGAATAGCGCTGGAGGTTGGCAAAAAAGTCGAAGAAAGTCT
CAAGTAAATGAAGGCTAAAAAAGCGATGGGAATGGACAAAGAGAAGATCG
ACATCATCATCATAGAACTCACTTCTCAAATTCACTTGATCCAGCCGACA
TCAAACGCTAAGTATCTGGTTTATATTGCTGCTGATCGCTCCACCACCAA
CCTTGGAATTTCAAGAAGAATAGCGCTGGAGGTTGGCAAAAAAGTCGAAG
AAAGTCTCAAGTAA
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