mRNA_M-pyrifera_M_contig1233.4777.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1233.4777.1
Unique NamemRNA_M-pyrifera_M_contig1233.4777.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Match: A0A6H5L014_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L014_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 2.250e-124
Identity = 180/196 (91.84%), Postives = 186/196 (94.90%), Query Frame = 1 
Query:  112 MKVSGVVCFMAAAGAANAFVAPVPVSSRLGAVTRAESSLTMAAKKDGKKEEWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY 699
            MKVSGVVCFMAAAGAANAFVAP   ++RLGAVTR ESSL MA KK  KKEEWV VLKTSDIAPGELVGVTQDGQE+L+AADL GSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSL+DGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVL+NRNLKQEFESKYWTGLLDAQGKASGDYY
Sbjct:    1 MKVSGVVCFMAAAGAANAFVAP--SATRLGAVTRGESSLNMAVKKPSKKEEWVSVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 194
[Close]
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Match: A0A836CB65_9STRA (Ferredoxin component n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB65_9STRA)

HSP 1 Score: 274 bits (701), Expect = 8.100e-90
Identity = 139/194 (71.65%), Postives = 158/194 (81.44%), Query Frame = 1 
Query:  118 VSGVVCFMAAAGAANAFVAPVPVSSRLGAVTRAESSLTMAAKKDGKKEEWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY 699
            VS       AA  A AFVAP     RL  V R+ SS+ M AK   K EEWV VL+TS+IAPGELV V  DG ++L+AADL GSIYATANICPHLGTPLDQGSINA GALVCPLHKSAFSL+ G+LVGDWCPFPP+LGPLVLG+LEPPK+LAVFPVRA G NI+VL+NRNLK +FE+KYW+G+LDAQGKA+GDYY
Sbjct:    8 VSTAAVVALAASGAEAFVAP--AGGRLAGV-RSSSSMRMMAKVPAK-EEWVSVLQTSEIAPGELVPVETDGLQLLIAADLDGSIYATANICPHLGTPLDQGSINAQGALVCPLHKSAFSLETGELVGDWCPFPPILGPLVLGKLEPPKNLAVFPVRAKGSNIEVLVNRNLKADFETKYWSGILDAQGKATGDYY 197
[Close]
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Match: A0A6V1TRG8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TRG8_HETAK)

HSP 1 Score: 256 bits (655), Expect = 6.750e-83
Identity = 130/192 (67.71%), Postives = 152/192 (79.17%), Query Frame = 1 
Query:  127 VVCFMAAAGAANAFVAPVPVSSRLG-AVTRAESSLTMAAKKDGKKEEWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY 699
            VVC +A  G A AFV   P S+ L  +  ++ SSL M AK  G KEEWVPVLKT +IAPGELV V  DG ++L+ AD  GSIYA+ANICPHLGTPLDQGS+   G +VCPLHKSAFSL+ G+L GDWCPFPP+LGPLVLG+LEPPK+LAV PVRA G +I+VL+NRNLK  FESKYW GLLDA+GKA+GDYY
Sbjct:    7 VVCVIALIGLAKAFV---PASNGLARSAVKSTSSLQMMAKV-GAKEEWVPVLKTDEIAPGELVPVETDGLQLLIIADFDGSIYASANICPHLGTPLDQGSLGD-GTIVCPLHKSAFSLETGELAGDWCPFPPILGPLVLGKLEPPKNLAVVPVRAKGNSIEVLVNRNLKSMFESKYWAGLLDAKGKATGDYY 193
[Close]
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Match: A0A7S2V0A4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0A4_9STRA)

HSP 1 Score: 243 bits (619), Expect = 2.070e-77
Identity = 126/197 (63.96%), Postives = 146/197 (74.11%), Query Frame = 1 
Query:  112 MKVSGVVCFMAAAGAANAFVAPVPVSSRLGAVTRAESSLTMAAKKDGK-KEEWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY 699
            MK   VV    AAG  NAF+ P P  +   AV    S L M        KEEW+PVLK S+IA GELV V QDG ++LV AD  GSIY TANICPHLGTP+DQGS+   G +VCPLHKSAFSL+ G+L GDWCPFPP+LGPLVLG+LEP K+LA F VRA G +I+VL+NRNLKQ+FESKYW G+LDAQGKA+GDYY
Sbjct:    2 MKTFVVVLLCIAAGV-NAFL-PAPGMAGSSAVRATSSQLKMGGVPFAPTKEEWIPVLKKSEIAAGELVPVEQDGLQLLVIADFDGSIYCTANICPHLGTPMDQGSLGD-GTIVCPLHKSAFSLETGELAGDWCPFPPLLGPLVLGKLEPAKNLATFAVRAKGDSIEVLVNRNLKQQFESKYWAGILDAQGKATGDYY 195
[Close]
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Match: A0A6U4IM54_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IM54_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.780e-73
Identity = 119/203 (58.62%), Postives = 149/203 (73.40%), Query Frame = 1 
Query:   94 PHTTDTMKVSGVVCFMAAAGAANAFVAPV-PVSSRLGAVTRAESSLTMAAKKDGKKEEWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY 699
            P    TM +  V+  + AA  + AFVA   P ++R    TRA S+L M A    K E WV VLKTS+I  GELV V  DG  +L+AAD +G+IY  AN+CPHLGTPLDQG++ A G +VCPLHK+AFSL  G++VGDWCPFPP+LGP+VLG+LEP K++A FPVR+SG NIQV +N+N + EFES YW G+LDAQGKA+GDYY
Sbjct:   10 PPQNPTMMMKFVLAALLAAVPSMAFVAKAGPSAAR---ATRASSALNMMAGARAKME-WVTVLKTSNIGKGELVPVETDGMNLLIAADTNGAIYCLANVCPHLGTPLDQGTV-ANGVIVCPLHKTAFSLKSGEVVGDWCPFPPILGPMVLGKLEPAKNVATFPVRSSGSNIQVQVNKNARAEFESGYWAGILDAQGKATGDYY 207
[Close]
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Match: A0A6U4JWG8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JWG8_9STRA)

HSP 1 Score: 228 bits (581), Expect = 2.340e-71
Identity = 107/164 (65.24%), Postives = 131/164 (79.88%), Query Frame = 1 
Query:  208 TRAESSLTMAAKKDGKKEEWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY 699
            TRA S+L M A    K E WV VLKTS+I  GELV V  DG  +L+AAD +G+IY  AN+CPHLGTPLDQG++ A G +VCPLHK+AFSL  G++VGDWCPFPP+LGP+VLG+LEP K++A FPVR+SG NIQV +N+N + EFES YW G+LDAQGKA+GDYY
Sbjct:   55 TRASSALNMMAGARAKME-WVTVLKTSNIGKGELVPVETDGMNLLIAADTNGAIYCLANVCPHLGTPLDQGTV-ANGVIVCPLHKTAFSLKSGEVVGDWCPFPPILGPMVLGKLEPAKNVATFPVRSSGSNIQVQVNKNARAEFESGYWAGILDAQGKATGDYY 216
[Close]
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Match: A0A4D9CV78_9STRA (Rieske domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV78_9STRA)

HSP 1 Score: 226 bits (576), Expect = 6.940e-71
Identity = 101/148 (68.24%), Postives = 124/148 (83.78%), Query Frame = 1 
Query:  256 KEEWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY 699
            K+EWV +LK +DIAPG+++ V   G ++L+ AD  GS+Y  ANICPHLGTPLDQGS+   G +VCPLHKSAFSL+ G+LVGDWCPFPPVLGPLVLG+L+PP+DLAVF VR+ G +I+ L+N NLK +FESKYW GLLDAQGKA+GDYY
Sbjct:   50 KDEWVSLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGD-GTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
[Close]
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Match: A0A7S0XBI6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XBI6_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.920e-69
Identity = 106/177 (59.89%), Postives = 130/177 (73.45%), Query Frame = 1 
Query:  169 VAPVPVSSRLGAVTRAESSLTMAAKKDGKKEEWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY 699
            +A VP   R  +  R  S L M  K   KKEEWVPVLK+SDIA G+LV V  DG  IL+ ADL G I+A  N CPHLGTPL+ G +     +VCPLHKSAFSL+ G +VGDWCPFPP+LGPLVLG+L PP+ +  FPVRA G  ++V ++R+LK+ FESKYW+GLLDAQGKA+G+YY
Sbjct:   17 IAFVPSMPRAISSGRLNSQLQM--KVISKKEEWVPVLKSSDIAAGDLVPVEVDGVAILIVADLDGKIFAIGNSCPHLGTPLENGRLGEGSTIVCPLHKSAFSLESGDVVGDWCPFPPILGPLVLGKLAPPEKVVTFPVRAKGQTVEVFVDRSLKERFESKYWSGLLDAQGKATGEYY 191
[Close]
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Match: A0A2V3IZ87_9FLOR (Methanesulfonate monooxygenase ferredoxin subunit n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ87_9FLOR)

HSP 1 Score: 188 bits (477), Expect = 4.390e-56
Identity = 87/149 (58.39%), Postives = 111/149 (74.50%), Query Frame = 1 
Query:  253 KKEEWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY 699
            K+E WVP+L+TS+I PGEL GV   GQ+ILV+ D  G +YA+ANICPHLGTPL  GSI   G L C  HKS++ L  G+L GDWCPFPPV+GPL LG+L+ P+ L V+ VR +GG I+ LL+ + K ++E +YW GLLDA GKA+G YY
Sbjct:   39 KQEAWVPLLETSEITPGELKGVVVAGQQILVSCDFDGQVYASANICPHLGTPLTDGSIGD-GVLTCTQHKSSWDLSTGELAGDWCPFPPVVGPL-LGKLQGPRPLTVYSVRENGGQIEALLDVDAKADYEKEYWQGLLDATGKATGGYY 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Match: A0A1X6P6Y5_PORUM (Rieske domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6Y5_PORUM)

HSP 1 Score: 187 bits (475), Expect = 1.130e-55
Identity = 96/176 (54.55%), Postives = 117/176 (66.48%), Query Frame = 1 
Query:  175 PVPVSSRLGAVTRAES-SLTMAAKKDGKKEEWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY 699
            P   S R+ A T   S S   AA    K + WVP+++T+ + PGEL  V   GQ ILV  D+ G +YA++NICPHLGTPL  GS+   G L C  HKS++ L  G+L G+WCPFPPVLGPL LG+L+ P  LAVFPVR   G I+ LL+ +   EFES YW GLLDAQGKASGDYY
Sbjct:   20 PAICSRRVFAGTAVASPSAARAAPLTMKTDVWVPLVETAALEPGELKAVYTTGQSILVTCDIDGQVYASSNICPHLGTPLTDGSVGD-GVLTCAQHKSSWDLKTGELAGEWCPFPPVLGPL-LGKLQAPSTLAVFPVREKSGTIEALLDMDAVAEFESDYWKGLLDAQGKASGDYY 193
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1233.4777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L014_9PHAE2.250e-12491.84Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A836CB65_9STRA8.100e-9071.65Ferredoxin component n=2 Tax=Tribonema minus TaxID... [more]
A0A6V1TRG8_HETAK6.750e-8367.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V0A4_9STRA2.070e-7763.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U4IM54_9STRA3.780e-7358.62Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4JWG8_9STRA2.340e-7165.24Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A4D9CV78_9STRA6.940e-7168.24Rieske domain-containing protein n=2 Tax=Monodopsi... [more]
A0A7S0XBI6_9STRA1.920e-6959.89Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A2V3IZ87_9FLOR4.390e-5658.39Methanesulfonate monooxygenase ferredoxin subunit ... [more]
A0A1X6P6Y5_PORUM1.130e-5554.55Rieske domain-containing protein n=1 Tax=Porphyra ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1233contigM-pyrifera_M_contig1233:3832..9647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.2
Seed ortholog evalue7.5e-98
Seed eggNOG ortholog2880.D8LQ48
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Rieske-like [2Fe-2S] domain
EggNOG OGs2S5ES@2759,COG2146@1
Ec32 ortholog descriptionRieske [2Fe-2S] iron-sulphur domain
Ec32 orthologEc-26_006160.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size876
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1233.4777.1prot_M-pyrifera_M_contig1233.4777.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1233 4006..9536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.8239129-UTR-M-pyrifera_M_contig1233:3831..40051622815751.8239129-UTR-M-pyrifera_M_contig1233:3831..4005Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1233 3832..4005 -
1692277552.4924803-UTR-M-pyrifera_M_contig1233:3831..40051692277552.4924803-UTR-M-pyrifera_M_contig1233:3831..4005Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1233 3832..4005 -
1622815751.8713698-UTR-M-pyrifera_M_contig1233:9536..96471622815751.8713698-UTR-M-pyrifera_M_contig1233:9536..9647Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1233 9537..9647 -
1692277552.5374997-UTR-M-pyrifera_M_contig1233:9536..96471692277552.5374997-UTR-M-pyrifera_M_contig1233:9536..9647Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1233 9537..9647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.8375063-CDS-M-pyrifera_M_contig1233:4005..44491622815751.8375063-CDS-M-pyrifera_M_contig1233:4005..4449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1233 4006..4449 -
1692277552.5056555-CDS-M-pyrifera_M_contig1233:4005..44491692277552.5056555-CDS-M-pyrifera_M_contig1233:4005..4449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1233 4006..4449 -
1622815751.8521342-CDS-M-pyrifera_M_contig1233:8738..88271622815751.8521342-CDS-M-pyrifera_M_contig1233:8738..8827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1233 8739..8827 -
1692277552.5162094-CDS-M-pyrifera_M_contig1233:8738..88271692277552.5162094-CDS-M-pyrifera_M_contig1233:8738..8827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1233 8739..8827 -
1622815751.861921-CDS-M-pyrifera_M_contig1233:9478..95361622815751.861921-CDS-M-pyrifera_M_contig1233:9478..9536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1233 9479..9536 -
1692277552.5273156-CDS-M-pyrifera_M_contig1233:9478..95361692277552.5273156-CDS-M-pyrifera_M_contig1233:9478..9536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1233 9479..9536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1233.4777.1

>prot_M-pyrifera_M_contig1233.4777.1 ID=prot_M-pyrifera_M_contig1233.4777.1|Name=mRNA_M-pyrifera_M_contig1233.4777.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
MKVSGVVCFMAAAGAANAFVAPVPVSSRLGAVTRAESSLTMAAKKDGKKE
EWVPVLKTSDIAPGELVGVTQDGQEILVAADLSGSIYATANICPHLGTPL
DQGSINAAGALVCPLHKSAFSLDDGKLVGDWCPFPPVLGPLVLGRLEPPK
DLAVFPVRASGGNIQVLLNRNLKQEFESKYWTGLLDAQGKASGDYY*
back to top

mRNA from alignment at M-pyrifera_M_contig1233:3832..9647-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1233.4777.1 ID=mRNA_M-pyrifera_M_contig1233.4777.1|Name=mRNA_M-pyrifera_M_contig1233.4777.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5816bp|location=Sequence derived from alignment at M-pyrifera_M_contig1233:3832..9647- (Macrocystis pyrifera P11B4 male)
GTTTCCTCGAATCGCTTGCTTCCCTCATCCTGGTACCCCCTGCGCTACTT
CTCTGCCAAACCACCACAGCCAGCACGGCATAGACAGTCCGTACCACACA
CAACCGATACGATGAAGGTCTCCGGCGTCGTTTGCTTTATGGCCGCAGCT
GGCGCGGCCAACGCTTTCGGTGAGAGCAAATGAAAAGCCTGGCTTCAGGG
AGAGGCCAGGGGGGACTGACATTCTCACTGCCTGTCTCGTGGGTTGGGCG
ATAAGAGCAGGAAGCGAATCGGGGCAGTTCAAGCAGGACGGTGAATAGAG
GCCCATCATCGGCGCTCTGTTCCTTACGCGACCTCAGCATGACCACGGCA
GCCGCTCGTTTGTTGTTTTCGTTTTGGTTGGATACATGCAACGAGTTCTC
CCTCTCTGCCGTCAGTGCGTCAGCTATAACTGATACAGCAAGAGCTGCTT
TTGTGCATGCAACATCGAGTGCGCCGTTTTTGGCCACTCCCCACGTAGTC
TAGCGTTGTCTCGGGCCAGGCATCGTCTCCTGTAGGGTCCCTCACTTGGT
TTGCGTCACCAGTGTGCTCCTTCTCCCTCGATCTTCCCGATTGTAAACCT
TCGCCCTGGGCTCGTGTCGTTTTTTTTTTATCGCGCCTCTGGGCCTCACT
TTTTGTATCATGCTCCTTTCTCCTCATCTTTGATTCATTTTGATGCGTGT
GTGATTCTGCCAGATGTTGGAGTACGTGTGACGAACCAAAGCCAGAACCA
AATCCTCATGGCAACATGTTGAACCCTTTTTCCATCTCTCCGTGTGCGAT
GTTGGTCTTGCCTGATGCAGTTGCGCCGGTACCGGTTTCATCTCGCCTGG
GCGCGGTGACACGGGCGGAGTCTTCGCTGACGATGGCGGCGAAGAAGGAT
GGCAAGAAGGTCAGTCAGTATTCAAGTGATTCATAACACGAAACAACCTG
TGGTATACTTTTTAGTGTGCATCGTGTACGAGTAGCCCAAGCGCAGTTGC
TTATTTGCGAGCCCCAAACGACTACAAGCAGTACTCCCAAGTCAAGTCAA
GGTTATCGAAAAACATGACCACTGCTACATATCAGCCGCCATCTGCTTTT
CGACGGAGGGTTTTCTTTGTTTTCCTCTGCTCTTGGTACCACTACGAGCT
TGGCTGCCAGCCAAAATGTGAGCCTGGCTAGACGATGATCACGTCATGGT
GTGGCTCAGGTGACTTTTCTATACATTAAGCAACAGTTTCTTTCGTATCA
GGTCAGCAGTATCGGACCCAAAAACTTGGCAGTATATAGGCAGTAACTCT
TTTCTCGGTATTGCTGTACCGCTCCCACTCCTTTTTGTCTTTTTGTATGG
ATCTAAGCCCGTTGCCACCAGGTTTATCTGTTACCAGACAAGAGCCTTTA
GACGCAGAATGCCAGCAGCAGTTTGATTTCGATACCGCAGGTATCGAATA
AACACGCGTGAACGCAAGTTCAACCGGCTTGCGCTATCATGTTCCGAGCG
AGCCGTGTGTGGAACTCCCGGGTCTGATGCTTTTCAGCAGCGGATAATAT
TAGTTAATAGTATCATACAGCTCTCATACATCGGTGACGTTTTGGTTCGC
TGGCATTACATGAGCCTTTCATCTATGATACACCGGTTACATGCAGTGGA
GCACTCAGAGCTTACAGGAGCGAGAGCCGCCGGGCCAACGCGGAAAGCCC
ATGCTGAAAGAAAGGAAAGGAGTGGAAGCCAATCGGTAGTTGGATATGCT
GAATGCTGACGCAGCACCACAACCTATTTTTCGTCGCATGGGCCATGGGG
GCTACTGCTGCTGCTGCTGTGTCGCACGGGGGAATGTTATTCCCATATAC
TGCTACTGCTGTGCTGCTGTCTGCAAATACGATCTCCAGAAGTGCAAAAG
TACAGCAAAGTACTGCGTCAGTTTTTCTATAAACAGCAGTAGTCCCTATA
TAGTTTTCGGAAAACGACACACCGTGCTGCACCACCCCGCCCGCGCAATT
GCCAAATGTCTGTACCCACGAGGGCTAAAAGCTAAAAGCGATCCAATGTT
GTGATGATACTTCGATAGGGAAACGAACCTCCTGCGTGCTCTGTGATCCG
CTCACTACTTCCTACGGCTGTACCGATACGTATAAATGTCGTGTCTTCGG
CAGTAACGCAAGTAACACAGACAACAGCCGATGCTATTCGTCAGAGTTGA
ACCATTAATACGAGCTAAATGTCATTCATGCGTTCATGCGGCACTCCCTT
CTCGCGCACTTTTTCCGTGCAGGTAGTCGGATGTACCTGGTATCAAATAC
CCAGATACTATATACCCCGGTATCCTTTTGGACCGAGATTTTAGGACCTT
CTAGTCTTCATATTTTATGGATGCCTAAACTCTCGCTCTATGTCTGTCCA
GTTTCCGTCCAGAATAGTGCTGGTCAGATACGTGCTAAAGGCAAGGATAA
GCGAGACAATACTCTCGCTACTCGTACGTACCGCGTAGCTGCTACCAGGT
ACCTCGTATGCGTGAGTATATCAAACGCTAGTGCGCCGTTCTACTGCTCT
TGGCATAATACCATACAAAATACCTGGTACATGGATTACATTGCTCTGCG
GTGTGATGTGACCGACGGCCACATTCTCAGTGCCCACCCCACTACCTTGA
GCTACGATATCATGTCGCCCTCGGTATGATCATGGAGCGCTGTGACCCAA
GTGCCCTACATGCGTTCATGAACGAGTCCCTTTCATTCCTTGGTCGTATG
TACACTACCAGGTAGTAATAGTGACTAGGATGGAAGTGCCCTGCTGCCAG
TGCGTTGGCCGTGGTATCCGCGGCATGCAGTGCTACTGCTGTGACATACC
AGTACAATATCGTGGTAGTGGCTGTCGTGTCGTCCCATCTATTGAATAGT
GGGTTGAGTTTCATGGCGATATGGTGGTGCTCGAGCCTAAAGCTTGACGT
GCCTTTGTCCAGAGTAATATAACGGGGGAGCATAGTAAACCATAGTAAAT
AGGACCTGCGGTACACACAAAAACCTATATATTTCCCTATTTTTTCCAAC
AATATTTGGTCCTGTTTACTATGGTCCCCCGTAATATCAATATTAGTAGT
ACATTGTATATGTCTGCGTGATTGCTGTCCGTTTTTTGTTTTTTCTTGTT
ATCCGTCGATTCGCGGAAGGACCCACCGTTGTTGTACATATCGTCGTGAG
TAAAGTACAACTCACGGCAGATGTTCTCAAGACATTATACGTCTCTCTGC
TGTCTATACAAGTACGTCCAAAAACGCTATTAATAGCTTCAAAATATCGG
TGTAATGTGACTTGTACATCAAAGCTCAACCTGATGGAGATTTAGTCCGA
AGGGTGGTACGAGGCGAGGATTCTCGGTGCCCGTCAACGGTCCACACGAA
GCGGGGCGTCCACACCTGGCGTTTATATTTGCGTGCCTCATCTATCACGC
TAGGATGGTAGACCTCACATATCACCATCACGACAAAACTGCATTAATTC
CAAGTACTTTACCTTTTCCCTTAAAAATGCTACAGGCTACGGGGGTGTGG
GGTCAGGGGTTCTTGAGGCCGGACGCGTCAGAGTTGGTGGCCTTCCATTC
CATCCGAACCAAGCCAAACCGATGGTGTTGCTTTCACTTCCACTACTGTA
CAACTTACAACCACCTGCTGTAGTATATGCACATGCTCATGGTACATGTA
CTTGGGCTGTTGTGGTTGACGGAACGGAGTCAGTGCGTGCTTCTCGAGTA
AACACCAGAAGACTCGCTTGGCTAAAGATATTCACCGGACTGCATCTCCG
AAAGAGGCCGAAAACCGAATCGGAGGCGTCGTTCTCAAAACGAAGAAACG
TTTTTTGTTTTGGCAGCTATTATCCACTTTATTACTGGAGTCTCGTTTTG
GGGATAAACCAGTCAAATTGTAAGTAGTTGTCCCCAAAACGAGCCGCGAT
CCTGAACGGGTTGAAAGCCTCCCAAACCTTGGGAAACCACGGTTTATTCT
TGTATTTTCCTGGATTTGCTTCTCGTTTGCTCAACTTTCCACGCTGGTGC
GTATGTTCACATTCAATGCTGCAGGCTCGTTTTGGTGCAGATATGGGAGC
CTTCAAAAACCAATACTGGAACATAATATGTAACCGGTGCTCTATTTGGA
ATCAGACTGGTCGCAAACCCCTGCCGTGGTTTCCAGGAAAACGCCGATAG
CCGGGTATTCTTGATGCTGTGCCCATCTTGACGCTGACTTGTTTTTCCCG
CTCTCGGCGTGTTGTCGTTTCATCATATTATGGTTGAATGTGTACGTACT
TCGGTTGGGTTTTCGGACTTACGCGTACATGAAGCAAATGTACGGGGCGA
CAAGTGGGCCATGAACGCCTGTCTCTGCCCCCCCACGAGTATAGGCAGGC
GTTTCTTACGCCTTTGTCGCACCCGCATTCAATATAGTAGCGGCACGCGT
ACATGCACTTGCGGTGTGGTATCGCAGGGTGTGCAGTGGGCGTGAGGTAG
ACGTCAGACAGACAGCTTTCCAAACTGAGTACGTGTCATTTGCGACAGCC
TACTAATTTTTTCTGCCATTAATTTTGCATTTTTCCTTACCTGGCTGGTG
CTTGTTTCAATAGTTACATTTCCGGCGAGACTGCCTTTTCTGTACAACCA
TGAATAGCTGAACGCTCGTTTTTGGGAATACTACTTGGATTGAGAGTAGG
ATCATTTAGGCCGTGGCGGAAGGATTGAGGACACCTTCCCTTTGTCAACA
CGCTTGCTTTGCCCTCTTTTTTGTTGTCGGTCGCTCTGATGCCTCTCACC
GCCCTCCTTTGGCTGTTCAGGCCTTGACTTGACCTTTTTGACCCTTTCAA
GACTGCGGTCTTGTTTCGGGGACAAAGTACTCTAAGTACTGGTTTGCCTT
CAAAACGGGGCTGCAATACTAAAGAGATGAAATCGGGATTATCCTCGAAG
TAATTCATGCCCCTATTCAAGAATCCTCCAAACAGCGCCGGGCTCGCAAG
GCTCTCGCAAAGACCGGTCCGTATCAGATACTTGAATACATGTACTATAA
CGCGAAACGCTCGACACTACGGCCTTGAACCTACCTTGACGCCGACCCAA
CCCCACATATCAGTGACGAAACCCCTCCTTGAGCTTCAAAACCAACACTA
ACCCTACATGGAACTTACCGCCTACCCCAACATCAAAACCTGCAACAGGA
GGAGTGGGTGCCCGTGCTGAAGACGTCCGACATCGCACCGGGGGAGCTCG
TGGGTGTCACGCAGGACGGCCAGGAGATCCTCGTCGCGGCCGACCTCTCC
GGATCCATCTACGCGACGGCCAACATCTGCCCTCACTTGGGCACACCGCT
TGACCAGGGAAGCATCAACGCGGCGGGCGCGCTGGTGTGCCCGTTGCACA
AGTCTGCGTTTTCGCTCGACGACGGGAAGTTGGTGGGAGACTGGTGCCCC
TTCCCCCCCGTCCTCGGCCCCCTTGTGCTCGGCCGGCTTGAACCCCCTAA
GGACCTCGCGGTTTTCCCGGTGCGCGCTAGCGGCGGAAACATCCAGGTGC
TCCTCAACCGGAACCTGAAGCAGGAGTTCGAGAGCAAGTACTGGACGGGT
CTCCTCGACGCCCAAGGAAAGGCCTCGGGCGACTACTACTGAAGCGGTTG
GCCTGGCCTGGCTTGGCCTTCGCTCACAACACAAAATAACAAAAATCAAA
GTTATCAGATGATGGTTCTCTTTTTTATTTTCCGTCATTTTTTTTTTTTG
CTTCTTCGCTCCCTCTCTCTCCTTCTCTTTTTCTGCTGTCGGCGTGCTCA
ATGTTTCGGATGGCAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1233:3832..9647-

>mRNA_M-pyrifera_M_contig1233.4777.1 ID=mRNA_M-pyrifera_M_contig1233.4777.1|Name=mRNA_M-pyrifera_M_contig1233.4777.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig1233:3832..9647- (Macrocystis pyrifera P11B4 male)
ATGAAGGTCTCCGGCGTCGTTTGCTTTATGGCCGCAGCTGGCGCGGCCAA
CGCTTTCGATGAAGGTCTCCGGCGTCGTTTGCTTTATGGCCGCAGCTGGC
GCGGCCAACGCTTTCGTTGCGCCGGTACCGGTTTCATCTCGCCTGGGCGC
GGTGACACGGGCGGAGTCTTCGCTGACGATGGCGGCGAAGAAGGATGGCA
AGAAGTTGCGCCGGTACCGGTTTCATCTCGCCTGGGCGCGGTGACACGGG
CGGAGTCTTCGCTGACGATGGCGGCGAAGAAGGATGGCAAGAAGGAGGAG
TGGGTGCCCGTGCTGAAGACGTCCGACATCGCACCGGGGGAGCTCGTGGG
TGTCACGCAGGACGGCCAGGAGATCCTCGTCGCGGCCGACCTCTCCGGAT
CCATCTACGCGACGGCCAACATCTGCCCTCACTTGGGCACACCGCTTGAC
CAGGGAAGCATCAACGCGGCGGGCGCGCTGGTGTGCCCGTTGCACAAGTC
TGCGTTTTCGCTCGACGACGGGAAGTTGGTGGGAGACTGGTGCCCCTTCC
CCCCCGTCCTCGGCCCCCTTGTGCTCGGCCGGCTTGAACCCCCTAAGGAC
CTCGCGGTTTTCCCGGTGCGCGCTAGCGGCGGAAACATCCAGGTGCTCCT
CAACCGGAACCTGAAGCAGGAGTTCGAGAGCAAGTACTGGACGGGTCTCC
TCGACGCCCAAGGAAAGGCCTCGGGCGACTACTACTGAGAGGAGTGGGTG
CCCGTGCTGAAGACGTCCGACATCGCACCGGGGGAGCTCGTGGGTGTCAC
GCAGGACGGCCAGGAGATCCTCGTCGCGGCCGACCTCTCCGGATCCATCT
ACGCGACGGCCAACATCTGCCCTCACTTGGGCACACCGCTTGACCAGGGA
AGCATCAACGCGGCGGGCGCGCTGGTGTGCCCGTTGCACAAGTCTGCGTT
TTCGCTCGACGACGGGAAGTTGGTGGGAGACTGGTGCCCCTTCCCCCCCG
TCCTCGGCCCCCTTGTGCTCGGCCGGCTTGAACCCCCTAAGGACCTCGCG
GTTTTCCCGGTGCGCGCTAGCGGCGGAAACATCCAGGTGCTCCTCAACCG
GAACCTGAAGCAGGAGTTCGAGAGCAAGTACTGGACGGGTCTCCTCGACG
CCCAAGGAAAGGCCTCGGGCGACTACTACTGA
back to top