mRNA_M-pyrifera_M_contig123224.4766.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123224.4766.1
Unique NamemRNA_M-pyrifera_M_contig123224.4766.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Match: A0A5D6XQC5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.840e-16
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:    1 FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEVRGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDSMVVWVRGGQSSAQLEALRDELCDALCIPLSETVSFR 408
            F   +GFW +YNH++R  D     D +LF+ G++P WE  A++ GG++ VR  R+G A    WE LVL  +G  F  G      N + G     RY++D + +W R   +S  L  +RD++ + L +P   ++ ++
Sbjct:   47 FKTVQGFWRMYNHMMRPNDLPNTMDYHLFKTGIKPMWEDNANRRGGKWMVRL-RKGIA-SRYWEDLVLGIIGEQFDVG------NEICGAVISVRYNEDIISLWNRNADNSEALRTIRDKMQEVLNLPHFVSLEYK 174
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BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Match: K3WQE2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQE2_GLOUD)

HSP 1 Score: 79.3 bits (194), Expect = 6.870e-15
Identity = 46/128 (35.94%), Postives = 68/128 (53.12%), Query Frame = 1 
Query:    1 FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEVRGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDSMVVWVRGGQSSAQLEALRDELCDALCIP 384
            F   +GFW +YNHL+R  D     D +LF+ G++P WE  A++ GG++ VR  R+G A    WE LVL  VG  F  G      N + G     RY++D + +W R   ++  L  +RD +   L +P
Sbjct:   57 FKTVQGFWRIYNHLMRPNDLPNTMDYHLFKTGIKPMWEDGANRRGGKWMVRL-RKGIA-SRYWEDLVLAIVGEQFDVG------NEICGAVISVRYNEDIISLWNRNADNNEALYRIRDTMRKVLNLP 176
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BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Match: W4FZB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZB5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.930e-15
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 1 
Query:    1 FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEVRGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDSMVVWVRGGQSSAQLEALRDELCDALCIPLSETVSFR 408
            F   +GFW +YNHL+R  D     D +LF+ G++P WE  A++ GG++ +R  R+G A    WE LVL  VG  F  G      N + G     RY++D + +W R   +S     +RD +   L +P   ++ ++
Sbjct:   53 FRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDTANRRGGKWMIRI-RKGIA-SRYWEDLVLAIVGEQFDVG------NEICGAVMSIRYNEDIISLWNRNADNSEACYRIRDTMRKLLNLPQFVSLEYK 180
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BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Match: A0A024TVS7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TVS7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.840e-15
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 1 
Query:    1 FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEVRGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDSMVVWVRGGQSSAQLEALRDELCDALCIPLSETVSFR 408
            F   +GFW +YNHL+R  D     D +LF+ G++P WE  A++ GG++ +R  R+G A    WE LVL  +G  F  G      N + G     RY++D + +W R   ++     +RD +   L +P   ++ ++
Sbjct:   52 FRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDSANRRGGKWMIRI-RKGIA-SRYWEDLVLAIIGEQFDVG------NEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFASLEYK 179
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BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Match: A0A6G0XTE8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTE8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.420e-14
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 1 
Query:    1 FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEVRGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDSMVVWVRGGQSSAQLEALRDELCDALCIPLSETVSFR 408
            F   +GFW +YNHL+R  D     D +LF+ G++P WE  A++ GG++ +R  R+G A    WE LVL  +G  F  G      N + G     RY++D + +W R   ++     +RD +   L +P   ++ ++
Sbjct:   55 FRTVQGFWRVYNHLIRPNDLPNTTDYHLFKSGIKPMWEDAANRRGGKWMIRI-RKGIA-SRYWEDLVLAIIGEQFDVG------NEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYK 182
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BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Match: A0A485LDV3_9STRA (Aste57867_20004 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDV3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.520e-14
Identity = 44/136 (32.35%), Postives = 71/136 (52.21%), Query Frame = 1 
Query:    1 FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEVRGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDSMVVWVRGGQSSAQLEALRDELCDALCIPLSETVSFR 408
            F   +GFW +YNHL+R  D     D +LF+ G++P WE  A++ GG++ +R  R+G A    WE LVL  VG  F  G      N + G     RY++D + +W R   ++     +RD +   L +P   ++ ++
Sbjct:   51 FRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDAANRRGGKWMIRI-RKGIA-SRYWEDLVLAIVGEQFDVG------NEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYK 178
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BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Match: A0A8K1CRQ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRQ5_PYTOL)

HSP 1 Score: 77.4 bits (189), Expect = 3.400e-14
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 1 
Query:    1 FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEVRGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDSMVVWVRGGQSSAQLEALRDELCDALCIPLSETVSFR 408
            F   +GFW +YNHL+R  D     D +LF+ G++P WE  A++ GG++ VR  R+G +    WE LVL  VG  F  G      N + G     RY +D + +W R   +S     +RD +   L +P    + +R
Sbjct:   56 FKTVQGFWQIYNHLVRPNDLPNTLDYHLFKTGIKPMWEDPANRKGGKWMVRV-RKGIS-SRYWEDLVLAIVGEQFDVG------NEICGAVVSIRYTEDVISLWNRNADNSEACYRIRDTMRKVLNLPQFVALEYR 183
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BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Match: A0A7S3LL32_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LL32_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.760e-14
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 1 
Query:    1 FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEVRGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDSMVVWVRGGQSSAQLEALRDELCDALCIPLSETVSFR 408
            F   EGFW LYNHL+R  +     D +LF+ G++P WE  A++ GG++ VR  R+G A    WE  +L  +G      E    GN + G     RY +D + VW R   +   ++ +RD L   L +P    V ++
Sbjct:   69 FATVEGFWQLYNHLVRPNEVPHTTDYHLFKSGIKPIWEDPANKMGGKWIVRL-RKGIA-SRYWEAALLAIIG------EDIDVGNEICGAVISVRYSEDIIAVWNRNADNVEAVQKIRDALRKILRVPDFAKVEYK 196
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BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Match: A0A024G5T8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G5T8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.800e-14
Identity = 42/136 (30.88%), Postives = 70/136 (51.47%), Query Frame = 1 
Query:    1 FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEVRGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDSMVVWVRGGQSSAQLEALRDELCDALCIPLSETVSFR 408
            F   +GFW +YNHL+R  D     D +LF+ G++P WE  +++ GG++ VR  R+G A    WE L+L  +G  F  G      N + G     RY++D + +W R   ++     +RD +   L +P    + ++
Sbjct:   56 FKTVQGFWCIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDPSNRRGGKWMVRM-RKGIA-SRYWEDLILAIIGEQFDVG------NEICGAVISIRYNEDILSLWNRNADNNEACYRIRDTMRRVLNLPQFVALEYK 183
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BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Match: F0W0Q3_9STRA (Eukaryotic initiation factor 4E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0Q3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.220e-13
Identity = 42/136 (30.88%), Postives = 70/136 (51.47%), Query Frame = 1 
Query:    1 FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEVRGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDSMVVWVRGGQSSAQLEALRDELCDALCIPLSETVSFR 408
            F   +GFW +YNHL+R  D     D +LF+ G++P WE  +++ GG++ VR  R+G A    WE L+L  +G  F  G      N + G     RY++D + +W R   ++     +RD +   L +P    + ++
Sbjct:   56 FKTVQGFWCIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDPSNRRGGKWMVRM-RKGIA-SRYWEDLILAIIGEQFDVG------NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRRVLNLPQFVALEYK 183
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123224.4766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A5D6XQC5_9STRA1.840e-1633.09Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WQE2_GLOUD6.870e-1535.94Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W4FZB5_9STRA7.930e-1533.09Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TVS7_9STRA9.840e-1531.62Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XTE8_9STRA2.420e-1431.62Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LDV3_9STRA2.520e-1432.35Aste57867_20004 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1CRQ5_PYTOL3.400e-1433.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3LL32_9STRA3.760e-1433.82Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A024G5T8_9STRA8.800e-1430.88Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0W0Q3_9STRA1.220e-1330.88Eukaryotic initiation factor 4E putative n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123224contigM-pyrifera_M_contig123224:76..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score82.4
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog10224.XP_006823948.1
Preferred nameEIF4E2
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000339,GO:0000340,GO:0001701,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0007275,GO:0007553,GO:0007554,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010566,GO:0010605,GO:0010608,GO:0010629,GO:0010817,GO:0010893,GO:0017148,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019899,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031625,GO:0032268,GO:0032269,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0043009,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045182,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090030,GO:0090031,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000026,GO:2000112,GO:2000113
EggNOG free text desc.translation initiation factor activity
EggNOG OGs38GD4@33154,3BGXI@33208,3CYQH@33213,COG5053@1,KOG1669@2759
Ec32 ortholog descriptionnovel cap binding protein nCBP
Ec32 orthologEc-20_003570.2
COG Functional cat.J
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.3521922-CDS-M-pyrifera_M_contig123224:75..4831622815751.3521922-CDS-M-pyrifera_M_contig123224:75..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123224 76..483 +
1692277552.2917297-CDS-M-pyrifera_M_contig123224:75..4831692277552.2917297-CDS-M-pyrifera_M_contig123224:75..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123224 76..483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123224.4766.1prot_M-pyrifera_M_contig123224.4766.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123224 76..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123224.4766.1

>prot_M-pyrifera_M_contig123224.4766.1 ID=prot_M-pyrifera_M_contig123224.4766.1|Name=mRNA_M-pyrifera_M_contig123224.4766.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
FLQAEGFWGLYNHLLRSGDSGGVGDVYLFEQGVQPAWEHEAHQGGGRFEV
RGGRRGAAFGVLWETLVLRFVGGTFPGGESGIGGNPVTGLEFRRRYHQDS
MVVWVRGGQSSAQLEALRDELCDALCIPLSETVSFR
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mRNA from alignment at M-pyrifera_M_contig123224:76..483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123224.4766.1 ID=mRNA_M-pyrifera_M_contig123224.4766.1|Name=mRNA_M-pyrifera_M_contig123224.4766.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig123224:76..483+ (Macrocystis pyrifera P11B4 male)
TTTTTGCAGGCTGAGGGGTTTTGGGGGTTGTACAACCACCTGTTGCGTTC
TGGGGACAGTGGTGGAGTGGGTGACGTGTATTTGTTCGAGCAAGGGGTGC
AGCCCGCGTGGGAACACGAGGCACACCAGGGAGGCGGTCGGTTTGAGGTG
CGTGGCGGGCGCAGAGGGGCAGCGTTCGGGGTGTTGTGGGAAACGTTGGT
GTTGCGGTTCGTAGGGGGCACGTTTCCCGGTGGGGAGAGTGGGATTGGGG
GCAATCCGGTGACTGGATTGGAATTTCGTCGTCGATACCACCAAGATTCG
ATGGTGGTGTGGGTGCGTGGAGGGCAAAGCAGTGCGCAGCTGGAAGCACT
GCGTGATGAGCTGTGTGACGCTCTGTGCATCCCACTTTCCGAAACAGTAT
CGTTTCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123224:76..483+

>mRNA_M-pyrifera_M_contig123224.4766.1 ID=mRNA_M-pyrifera_M_contig123224.4766.1|Name=mRNA_M-pyrifera_M_contig123224.4766.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig123224:76..483+ (Macrocystis pyrifera P11B4 male)
TTTTTGCAGGCTGAGGGGTTTTGGGGGTTGTACAACCACCTGTTGCGTTC
TGGGGACAGTGGTGGAGTGGGTGACGTGTATTTGTTCGAGCAAGGGGTGC
AGCCCGCGTGGGAACACGAGGCACACCAGGGAGGCGGTCGGTTTGAGGTG
CGTGGCGGGCGCAGAGGGGCAGCGTTCGGGGTGTTGTGGGAAACGTTGGT
GTTGCGGTTCGTAGGGGGCACGTTTCCCGGTGGGGAGAGTGGGATTGGGG
GCAATCCGGTGACTGGATTGGAATTTCGTCGTCGATACCACCAAGATTCG
ATGGTGGTGTGGGTGCGTGGAGGGCAAAGCAGTGCGCAGCTGGAAGCACT
GCGTGATGAGCTGTGTGACGCTCTGTGCATCCCACTTTCCGAAACAGTAT
CGTTTCGTTTTTTGCAGGCTGAGGGGTTTTGGGGGTTGTACAACCACCTG
TTGCGTTCTGGGGACAGTGGTGGAGTGGGTGACGTGTATTTGTTCGAGCA
AGGGGTGCAGCCCGCGTGGGAACACGAGGCACACCAGGGAGGCGGTCGGT
TTGAGGTGCGTGGCGGGCGCAGAGGGGCAGCGTTCGGGGTGTTGTGGGAA
ACGTTGGTGTTGCGGTTCGTAGGGGGCACGTTTCCCGGTGGGGAGAGTGG
GATTGGGGGCAATCCGGTGACTGGATTGGAATTTCGTCGTCGATACCACC
AAGATTCGATGGTGGTGTGGGTGCGTGGAGGGCAAAGCAGTGCGCAGCTG
GAAGCACTGCGTGATGAGCTGTGTGACGCTCTGTGCATCCCACTTTCCGA
AACAGTATCGTTTCGT
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