mRNA_M-pyrifera_M_contig123215.4764.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123215.4764.1
Unique NamemRNA_M-pyrifera_M_contig123215.4764.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123215.4764.1 vs. uniprot
Match: A0A2E7K809_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K809_9PLAN)

HSP 1 Score: 271 bits (693), Expect = 8.130e-92
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 1 
Query:    1 MMTQVSSAAGDLISISHEDGTESYAVLLFKSERVSGEILLGVFDRDISGPAEVDLHFGSLLYTYDTLISEGEWKIVGHIDVPNAIRYSRRLDGGLLWEGDQQIVSEETEQIPVMRIAGTGIAADYLHYLRNGGEDSA 411
            MMTQVSSAAGDLISISHEDGTESYAVLLFKSERVSGEILLGVFDRDISGPAEVDLHFGSLLYTYDTLISEGEWKIVGHIDVPNAIRYSRRLDGGLLWEGDQQ VSEETEQIPVMRIAGTGIAADYLHYLRNGGEDSA
Sbjct:    1 MMTQVSSAAGDLISISHEDGTESYAVLLFKSERVSGEILLGVFDRDISGPAEVDLHFGSLLYTYDTLISEGEWKIVGHIDVPNAIRYSRRLDGGLLWEGDQQNVSEETEQIPVMRIAGTGIAADYLHYLRNGGEDSA 137
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BLAST of mRNA_M-pyrifera_M_contig123215.4764.1 vs. uniprot
Match: A0A812M661_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812M661_SYMMI)

HSP 1 Score: 179 bits (454), Expect = 2.310e-52
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:  148 PAEVDLHFGSLLYTYDTLISEGEWKIVGHIDVPNAIRYSRRLDGGLLWEGDQQIVSEETEQIPVMRIAGTGIAADYLHYLRNGGEDSA 411
            PAEVDLHFGSLLYTYDTLISEGEWKIVGHIDVPNAIRYSRRLD GLLWEGDQQIVSEETEQIPVMRI GTGIAADYLHYLRNGGEDSA
Sbjct:  221 PAEVDLHFGSLLYTYDTLISEGEWKIVGHIDVPNAIRYSRRLDAGLLWEGDQQIVSEETEQIPVMRIEGTGIAADYLHYLRNGGEDSA 308
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123215.4764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E7K809_9PLAN8.130e-9299.27Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A812M661_SYMMI2.310e-5297.73Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123215contigM-pyrifera_M_contig123215:113..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.2441363-CDS-M-pyrifera_M_contig123215:112..5231622815751.2441363-CDS-M-pyrifera_M_contig123215:112..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123215 113..523 +
1692277552.2636912-CDS-M-pyrifera_M_contig123215:112..5231692277552.2636912-CDS-M-pyrifera_M_contig123215:112..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123215 113..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123215.4764.1prot_M-pyrifera_M_contig123215.4764.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123215 113..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123215.4764.1

>prot_M-pyrifera_M_contig123215.4764.1 ID=prot_M-pyrifera_M_contig123215.4764.1|Name=mRNA_M-pyrifera_M_contig123215.4764.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MMTQVSSAAGDLISISHEDGTESYAVLLFKSERVSGEILLGVFDRDISGP
AEVDLHFGSLLYTYDTLISEGEWKIVGHIDVPNAIRYSRRLDGGLLWEGD
QQIVSEETEQIPVMRIAGTGIAADYLHYLRNGGEDSA
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mRNA from alignment at M-pyrifera_M_contig123215:113..523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123215.4764.1 ID=mRNA_M-pyrifera_M_contig123215.4764.1|Name=mRNA_M-pyrifera_M_contig123215.4764.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig123215:113..523+ (Macrocystis pyrifera P11B4 male)
ATGATGACGCAGGTAAGTTCAGCTGCCGGGGATCTGATCTCCATCTCTCA
TGAGGATGGAACAGAGTCGTACGCCGTTCTGCTCTTTAAAAGCGAAAGAG
TGTCGGGCGAAATACTCCTCGGGGTATTTGATCGCGATATTTCAGGACCA
GCAGAAGTAGACCTGCATTTTGGCAGTCTGCTTTATACCTACGATACTTT
AATCAGTGAGGGTGAGTGGAAGATTGTCGGCCATATTGATGTCCCGAATG
CAATACGTTATTCACGCAGACTCGATGGGGGCCTCCTCTGGGAAGGGGAT
CAGCAGATTGTATCGGAAGAGACAGAACAGATTCCGGTCATGCGTATTGC
AGGGACGGGCATTGCTGCGGATTATCTCCATTACCTACGAAACGGGGGAG
AAGATTCAGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123215:113..523+

>mRNA_M-pyrifera_M_contig123215.4764.1 ID=mRNA_M-pyrifera_M_contig123215.4764.1|Name=mRNA_M-pyrifera_M_contig123215.4764.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig123215:113..523+ (Macrocystis pyrifera P11B4 male)
ATGATGACGCAGGTAAGTTCAGCTGCCGGGGATCTGATCTCCATCTCTCA
TGAGGATGGAACAGAGTCGTACGCCGTTCTGCTCTTTAAAAGCGAAAGAG
TGTCGGGCGAAATACTCCTCGGGGTATTTGATCGCGATATTTCAGGACCA
GCAGAAGTAGACCTGCATTTTGGCAGTCTGCTTTATACCTACGATACTTT
AATCAGTGAGGGTGAGTGGAAGATTGTCGGCCATATTGATGTCCCGAATG
CAATACGTTATTCACGCAGACTCGATGGGGGCCTCCTCTGGGAAGGGGAT
CAGCAGATTGTATCGGAAGAGACAGAACAGATTCCGGTCATGCGTATTGC
AGGGACGGGCATTGCTGCGGATTATCTCCATTACCTACGAAACGGGGGAG
AAGATTCAGCCATGATGACGCAGGTAAGTTCAGCTGCCGGGGATCTGATC
TCCATCTCTCATGAGGATGGAACAGAGTCGTACGCCGTTCTGCTCTTTAA
AAGCGAAAGAGTGTCGGGCGAAATACTCCTCGGGGTATTTGATCGCGATA
TTTCAGGACCAGCAGAAGTAGACCTGCATTTTGGCAGTCTGCTTTATACC
TACGATACTTTAATCAGTGAGGGTGAGTGGAAGATTGTCGGCCATATTGA
TGTCCCGAATGCAATACGTTATTCACGCAGACTCGATGGGGGCCTCCTCT
GGGAAGGGGATCAGCAGATTGTATCGGAAGAGACAGAACAGATTCCGGTC
ATGCGTATTGCAGGGACGGGCATTGCTGCGGATTATCTCCATTACCTACG
AAACGGGGGAGAAGATTCAGCC
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