mRNA_M-pyrifera_M_contig122932.4710.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122932.4710.1
Unique NamemRNA_M-pyrifera_M_contig122932.4710.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Match: A0A7W0ZEN9_9ACTN (Endopeptidase La n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0ZEN9_9ACTN)

HSP 1 Score: 103 bits (258), Expect = 1.910e-26
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 GPSAGITMTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKTVILP 183
            GPSAGI MTTA++SLLLDRP+R  V MTGEVTLQGRVLPIGGVKQKVLAAHRAG++ V+LP
Sbjct:   95 GPSAGIAMTTAIVSLLLDRPMRSTVGMTGEVTLQGRVLPIGGVKQKVLAAHRAGLREVVLP 155
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BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Match: A0A3M1P8P6_9BACT (Endopeptidase La (Fragment) n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M1P8P6_9BACT)

HSP 1 Score: 101 bits (252), Expect = 2.830e-26
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 GPSAGITMTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKTVILP 183
            GPSAG+TMTTAL+S+   RPVR DVAMTGE+TL+G+VLP+GG++ KVLAAHRAGIKTVILP
Sbjct:   19 GPSAGVTMTTALVSVFTQRPVRKDVAMTGEITLRGKVLPVGGIRDKVLAAHRAGIKTVILP 79
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BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Match: A0A6A7LV64_9CHLR (Endopeptidase La (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6A7LV64_9CHLR)

HSP 1 Score: 101 bits (251), Expect = 4.010e-26
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 GPSAGITMTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKTVILP 183
            GPSAG+TM TAL+SL L RPV+GDVAMTGE+TL+G+VLP+GG+K+KVLAAHR GIK VILP
Sbjct:   11 GPSAGVTMMTALVSLALGRPVQGDVAMTGEITLRGKVLPVGGIKEKVLAAHRVGIKKVILP 71
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BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Match: A0A7X7AND3_9FIRM (Endopeptidase La n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7X7AND3_9FIRM)

HSP 1 Score: 101 bits (252), Expect = 1.060e-25
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 GPSAGITMTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKTVILP 183
            GPSAGITM TAL S L  RPVR DVAMTGE+TL+GRVLPIGGVK+K LAAHRAGIKTVILP
Sbjct:   87 GPSAGITMATALASSLSQRPVRKDVAMTGEITLRGRVLPIGGVKEKALAAHRAGIKTVILP 147
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BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Match: A0A7W0V6I4_9CHLR (Endopeptidase La n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0V6I4_9CHLR)

HSP 1 Score: 100 bits (249), Expect = 1.250e-25
Identity = 46/61 (75.41%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 GPSAGITMTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKTVILP 183
            GPSAG+TMTTAL SL   RPVR D+AMTGE+TL+G+VLP+GG+++KVLAAHRAGI+TVILP
Sbjct:   14 GPSAGVTMTTALTSLATGRPVRNDLAMTGEITLRGKVLPVGGIREKVLAAHRAGIRTVILP 74
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BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Match: A0A1W9MUD0_9DELT (Endopeptidase La (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9MUD0_9DELT)

HSP 1 Score: 101 bits (251), Expect = 1.780e-25
Identity = 46/61 (75.41%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 GPSAGITMTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKTVILP 183
            GPSAG+TM TAL+SLL D+P+R D AMTGE+TL+G VLP+GG+K+KVLAAHRAGIKTV+LP
Sbjct:   96 GPSAGVTMLTALVSLLTDKPIRKDFAMTGEITLRGEVLPVGGIKEKVLAAHRAGIKTVLLP 156
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BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Match: A0A7V3K468_9CHLR (Endopeptidase La n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V3K468_9CHLR)

HSP 1 Score: 99.4 bits (246), Expect = 2.010e-25
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 GPSAGITMTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKTVILP 183
            GPSAG+TM TA++SLL  RPV  DV MTGE+TL+GRVLP+GG+KQKVLAAHR G+KTVILP
Sbjct:   10 GPSAGVTMVTAIVSLLTGRPVCADVGMTGEITLRGRVLPVGGIKQKVLAAHRTGLKTVILP 70
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BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Match: A0A7Z9XM19_9CHLR (Endopeptidase La n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Z9XM19_9CHLR)

HSP 1 Score: 105 bits (261), Expect = 2.140e-25
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 GPSAGITMTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKTVILP 183
            GPSAG+TM TAL+SLL DRPVR DV MTGEVTL+G+VLPIGGVKQK+LAAHRAG+K+VILP
Sbjct:  274 GPSAGVTMVTALVSLLTDRPVRADVGMTGEVTLRGQVLPIGGVKQKILAAHRAGLKSVILP 334
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BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Match: A0A7C6DN86_9CHLR (Endopeptidase La (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6DN86_9CHLR)

HSP 1 Score: 105 bits (262), Expect = 2.550e-25
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 GPSAGITMTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKTVILP 183
            GPSAG+TM TAL+SLL  RPVR DVAMTGE+TL+GRVLPIGGVK+KVL AHRAGIKTVILP
Sbjct:  330 GPSAGVTMVTALVSLLTSRPVRSDVAMTGEITLRGRVLPIGGVKEKVLGAHRAGIKTVILP 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Match: A0A062WZP0_9ACTN (Endopeptidase La n=3 Tax=Frankia TaxID=1854 RepID=A0A062WZP0_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 3.160e-25
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 GPSAGITMTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKTVILP 183
            GPSAG+TMTTAL SLL  RPVR DVAMTGEV+L GRVLPIGGVKQK+LAAHRAGI TV+LP
Sbjct:  148 GPSAGVTMTTALASLLSGRPVRADVAMTGEVSLTGRVLPIGGVKQKLLAAHRAGITTVLLP 208
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122932.4710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0ZEN9_9ACTN1.910e-2681.97Endopeptidase La n=1 Tax=Actinomycetia bacterium T... [more]
A0A3M1P8P6_9BACT2.830e-2677.05Endopeptidase La (Fragment) n=1 Tax=Calditrichaeot... [more]
A0A6A7LV64_9CHLR4.010e-2677.05Endopeptidase La (Fragment) n=1 Tax=Chloroflexi ba... [more]
A0A7X7AND3_9FIRM1.060e-2583.61Endopeptidase La n=1 Tax=Clostridia bacterium TaxI... [more]
A0A7W0V6I4_9CHLR1.250e-2575.41Endopeptidase La n=1 Tax=Chloroflexia bacterium Ta... [more]
A0A1W9MUD0_9DELT1.780e-2575.41Endopeptidase La (Fragment) n=1 Tax=Desulfobactera... [more]
A0A7V3K468_9CHLR2.010e-2575.41Endopeptidase La n=1 Tax=Anaerolineae bacterium Ta... [more]
A0A7Z9XM19_9CHLR2.140e-2581.97Endopeptidase La n=1 Tax=Anaerolineae bacterium Ta... [more]
A0A7C6DN86_9CHLR2.550e-2583.61Endopeptidase La (Fragment) n=1 Tax=Chloroflexi ba... [more]
A0A062WZP0_9ACTN3.160e-2583.61Endopeptidase La n=3 Tax=Frankia TaxID=1854 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122932contigM-pyrifera_M_contig122932:342..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score87.4
Seed ortholog evalue2.2e-15
Seed eggNOG ortholog1128421.JAGA01000003_gene2831
Preferred namelon
KEGG koko:K01338
KEGG Pathwayko04112,map04112
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
EggNOG OGs2NNNN@2323,COG0466@1,COG0466@2
EC3.4.21.53
COG Functional cat.O
Best tax levelunclassified Bacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size183
Cds size162
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.2336721-UTR-M-pyrifera_M_contig122932:341..3621622815748.2336721-UTR-M-pyrifera_M_contig122932:341..362Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122932 342..362 +
1692277550.8544571-UTR-M-pyrifera_M_contig122932:341..3621692277550.8544571-UTR-M-pyrifera_M_contig122932:341..362Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122932 342..362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.2461672-CDS-M-pyrifera_M_contig122932:362..5241622815748.2461672-CDS-M-pyrifera_M_contig122932:362..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122932 363..524 +
1692277550.8670783-CDS-M-pyrifera_M_contig122932:362..5241692277550.8670783-CDS-M-pyrifera_M_contig122932:362..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122932 363..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122932.4710.1prot_M-pyrifera_M_contig122932.4710.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122932 363..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122932.4710.1

>prot_M-pyrifera_M_contig122932.4710.1 ID=prot_M-pyrifera_M_contig122932.4710.1|Name=mRNA_M-pyrifera_M_contig122932.4710.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MTTALMSLLLDRPVRGDVAMTGEVTLQGRVLPIGGVKQKVLAAHRAGIKT
VILP
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mRNA from alignment at M-pyrifera_M_contig122932:342..524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122932.4710.1 ID=mRNA_M-pyrifera_M_contig122932.4710.1|Name=mRNA_M-pyrifera_M_contig122932.4710.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig122932:342..524+ (Macrocystis pyrifera P11B4 male)
GGTCCGTCGGCCGGCATCACGATGACCACCGCCCTCATGAGCCTGCTGCT
CGACCGACCGGTTCGAGGCGACGTCGCCATGACCGGTGAGGTCACACTAC
AGGGTCGGGTGTTGCCGATCGGTGGCGTCAAGCAGAAGGTCCTGGCGGCT
CACCGAGCCGGCATCAAGACGGTCATCCTCCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122932:342..524+

>mRNA_M-pyrifera_M_contig122932.4710.1 ID=mRNA_M-pyrifera_M_contig122932.4710.1|Name=mRNA_M-pyrifera_M_contig122932.4710.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig122932:342..524+ (Macrocystis pyrifera P11B4 male)
ATGACCACCGCCCTCATGAGCCTGCTGCTCGACCGACCGGTTCGAGGCGA
CGTCGCCATGACCGGTGAGGTCACACTACAGGGTCGGGTGTTGCCGATCG
GTGGCGTCAAGCAGAAGGTCCTGGCGGCTCACCGAGCCGGCATCAAGACG
GTCATCCTCCCGATGACCACCGCCCTCATGAGCCTGCTGCTCGACCGACC
GGTTCGAGGCGACGTCGCCATGACCGGTGAGGTCACACTACAGGGTCGGG
TGTTGCCGATCGGTGGCGTCAAGCAGAAGGTCCTGGCGGCTCACCGAGCC
GGCATCAAGACGGTCATCCTCCCG
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