mRNA_M-pyrifera_M_contig122926.4706.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122926.4706.1
Unique NamemRNA_M-pyrifera_M_contig122926.4706.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Match: A0A7S4MEI5_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MEI5_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 2.470e-20
Identity = 51/128 (39.84%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 KEDLPSMLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAAKKRYDNMSKVFKIAERLGGD--SSIVAPHRSYLSEAIFIRQAKYLNVADNEIPVKELYVLLLFSDIIIVARP 378
            ++DL S LIAP+QR+PRYVLL++ +   T  +H DY  +  ALE +   ADTV+A+K  +++   +   A R      S ++APHR+Y+ E IF R ++        + VK+++VL+LFSDI++ A+P
Sbjct:  701 RQDLSSYLIAPVQRLPRYVLLLKEMVKCTPEDHEDYKPLQQALEGITSIADTVNASKLLHESREMMIGCASRFTQQVSSQLIAPHRTYVCEGIFYRTSQAAESEPESLAVKDIHVLILFSDILVHAKP 828          
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Match: A0A151ZCK1_9MYCE (Pleckstrin (PH) domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZCK1_9MYCE)

HSP 1 Score: 84.0 bits (206), Expect = 2.740e-16
Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 1
Query:   10 LPSMLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAAKKRYDNMSKVFKIAERLGGD-SSIVAPHRSYLSEAIFIRQAKYLNVADNEIPVKELYVLLLFSDIIIVARPKAA 387
            L SMLI P+QRIPRYVLL+Q L  +T   H D+ D+  +LEKM+  A  ++  K++ DN  KV ++  +L G  S+IV   R Y+ E         L V D     K++Y L LF+DI+I A+P ++
Sbjct:  514 LESMLITPVQRIPRYVLLLQDLLKHTEESHPDFKDISESLEKMKNVAMQINDTKRQSDNSLKVVEVQNKLVGKFSNIVTAERRYVYEGC-------LFVGDTNAKSKKIY-LFLFNDILIFAKPSSS 632          
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Match: A0A2P6MZX8_9EUKA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MZX8_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 3.860e-16
Identity = 51/126 (40.48%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    7 DLPSMLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAAKKRYDNMSKVFKIAERLGGD-SSIVAPHRSYLSEAIFIRQAKYLNVADNEIPVKELYVLLLFSDIIIVARPK 381
            DL S LI PIQRIPRYVLL+Q L  +T   H DY+D+  ALEKM+  A  V+  K+  +N+++VF +A  L G   ++ APHR Y+          YL     + P  +L    LF+DI++  + K
Sbjct:  787 DLSSFLIKPIQRIPRYVLLLQELLQHTPPRHGDYNDIARALEKMKQVAGYVNDRKREAENLNQVFHVASNLTGKFDNLCAPHRRYIRRG-------YLTQMVEKTP--KLRFCFLFNDILVCTKAK 903          
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Match: A0A2P6NCF8_9EUKA (DH domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NCF8_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 4.200e-15
Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    7 DLPSMLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAAKKRYDNMSKVFKIAERLGGD-SSIVAPHR-----------------SYLSEAIFIRQAKYLNVADNEI----PVKELYVLL--LFSDIIIVARP 378
            DL S LI PIQR+PRY+LL++ L  NT ++HADY  +  A+EK+RG AD V+  K+  +N+ ++ KI + L GD  +IV PHR                 S +S +  +    + ++ DN +    P +++  L   +F+D+II+A P
Sbjct:  270 DLLSFLITPIQRLPRYILLLEDLIKNTPQDHADYVPLTLAVEKIRGIADHVNEEKRVSENIQQIMKIQDELAGDFENIVEPHRRLKRTEKFTWLNSPTFRSMVSPSKSVTDEVFDDIEDNRLAAPSPTRDVATLTCWVFNDLIILATP 417          
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Match: F0ZH73_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZH73_DICPU)

HSP 1 Score: 79.7 bits (195), Expect = 8.460e-15
Identity = 45/127 (35.43%), Postives = 71/127 (55.91%), Query Frame = 1
Query:    7 DLPSMLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAAKKRYDNMSKVFKIAERLGGD-SSIVAPHRSYLSEAIFIRQAKYLNVADNEIPVKELYVLLLFSDIIIVARPKA 384
            DL + LI PIQR+PRY+LL+Q L  NT   H DY+D+  AL+KM+  A+ V+  K+  +N+++V  I   L G  +++  PHR Y+ +   I   K             +Y+  LF+D+++    KA
Sbjct:  526 DLSAFLIMPIQRLPRYILLLQDLLKNTKETHTDYNDLSIALKKMKDVAEYVNEKKREAENLNQVLNIQSSLTGKFNNLAEPHRRYVKKGTLISNDK-------------IYLYFLFNDLLVKTENKA 639          
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Match: A0A151Z9A3_9MYCE (Pleckstrin (PH) domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z9A3_9MYCE)

HSP 1 Score: 79.0 bits (193), Expect = 1.570e-14
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    7 DLPSMLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAAKKRYDNMSKVFKIAERLGGD-SSIVAPHRSYLSE-AIFIRQAKYLNVADNEIPVK 327
            DL S LI PIQR+PRYVLL+Q L  +T   H DY+D+  AL+KM+  A+ V+  K+  +N+++V  I   L G   ++  PHR Y+ + A+F     YL    N++ VK
Sbjct:  516 DLSSFLIMPIQRLPRYVLLLQDLMKHTQETHTDYNDLTLALKKMKEVAEYVNEKKREAENLNQVLMIQNSLSGKFKNLAEPHRRYVHKGALFHHDKVYLYFLFNDLLVK 624          
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Match: A0A8J4V3U3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V3U3_9MYCE)

HSP 1 Score: 78.6 bits (192), Expect = 2.160e-14
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    7 DLPSMLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAAKKRYDNMSKVFKIAERLGGD-SSIVAPHRSYLSEAIFIRQAK-YLNVADNEIPVK 327
            DL + LI PIQRIPRY+LL+Q L  NT   H D+ D+ +AL+KM+  A+ V+  K+  +N+++V  I   L G  +++  PHR Y+ +   +   K YL +  N+I VK
Sbjct:  529 DLSAFLIMPIQRIPRYILLLQDLYKNTSESHPDHIDLTNALKKMKDVAEYVNEKKREAENLNQVLMIQSNLTGKFNNLAEPHRRYVRKGPVVSNDKVYLYILFNDILVK 637          
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Match: A0A2P6NL51_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NL51_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 4.020e-14
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 1
Query:    7 DLPSMLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAAKKRYDNMSKVFKIAERL----GGDSSIVAPHRSYLSEAIFIRQAKYLNVADNEIPVKELYVLLLFSDIIIVARPK 381
            DL S LI PIQRIPRYVLL++ L  NT  +H DY  +  AL K+   A  V+  K+  +NM+ V +I E++    G +  +V PHR  + +   + +       D     K+  V  LF+DI +V +PK
Sbjct:  838 DLQSFLILPIQRIPRYVLLLKDLSRNTSEDHPDYSGLMEALAKIEDVAIYVNEKKREAENMTTVMRIQEQVVFDSGREEPLVQPHRRLIKKGKLVER-------DESSVRKKSRVCFLFNDIFMVTKPK 959          
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Match: GXCDD_DICDI (Guanine exchange factor for Rac 30 n=3 Tax=Dictyostelium discoideum TaxID=44689 RepID=GXCDD_DICDI)

HSP 1 Score: 77.4 bits (189), Expect = 5.500e-14
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    7 DLPSMLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAAKKRYDNMSKVFKIAERLGGD-SSIVAPHRSYLSEAIFIRQAK-YLNVADNEIPVK 327
            DL + LIAPIQRIPRY+LL+Q L  NT   H D+ D+  AL+KM+  A+ V+  K+  +N+++V  I   L G  +++  PHR Y+ +   I   K +L    N++ VK
Sbjct:  585 DLSAFLIAPIQRIPRYILLLQDLLKNTKESHPDHQDLSLALKKMKDVAEYVNEKKREAENLNQVLTIQSSLTGKFNNLAEPHRRYVKKGTLISNDKIHLYFLFNDLLVK 693          
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Match: A0A2P6NS56_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NS56_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 1.310e-13
Identity = 42/126 (33.33%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   16 SMLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAAKKRYDNMSKVFKIAERLGGDSSIVAPHRSYLSEAIFIRQAKYLNVADNEIPVKELYV------LLLFSDIIIVAR 375
            ++LI P+QR+PRY LL++ L  NT  +H D+ DVCSAL KM+     ++ +K+  +N+ K+ K+ ++LG  + +V PHR  + E    +Q + +    +++   +L        L LF+D +++AR
Sbjct:  310 NLLITPVQRVPRYELLLRELVKNTPDDHPDFKDVCSALFKMQDINKQINDSKRNSENLEKIVKVQQKLGAPN-LVQPHRRLIKEGGMFKQKESIGGLMSDLIRSKLGYESDNTQLYLFNDCLVIAR 434          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122926.4706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MEI5_9EUKA2.470e-2039.84Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A151ZCK1_9MYCE2.740e-1640.94Pleckstrin (PH) domain-containing protein n=1 Tax=... [more]
A0A2P6MZX8_9EUKA3.860e-1640.48Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
A0A2P6NCF8_9EUKA4.200e-1535.81DH domain-containing protein n=1 Tax=Planoprotoste... [more]
F0ZH73_DICPU8.460e-1535.43Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A151Z9A3_9MYCE1.570e-1441.28Pleckstrin (PH) domain-containing protein n=1 Tax=... [more]
A0A8J4V3U3_9MYCE2.160e-1440.37Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A2P6NL51_9EUKA4.020e-1437.21Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
GXCDD_DICDI5.500e-1440.37Guanine exchange factor for Rac 30 n=3 Tax=Dictyos... [more]
A0A2P6NS56_9EUKA1.310e-1333.33Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122926contigM-pyrifera_M_contig122926:57..443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue2e-11
Seed eggNOG ortholog5786.XP_003286747.1
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
EggNOG free text desc.Putative GTP-ase activating proteins for the small GTPase, ARF
EggNOG OGs3XBI2@554915,COG5069@1,COG5347@1,KOG0518@2759,KOG0521@2759,KOG3519@1,KOG3519@2759
COG Functional cat.TZ
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size387
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.0306962-CDS-M-pyrifera_M_contig122926:56..4251622815748.0306962-CDS-M-pyrifera_M_contig122926:56..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122926 57..425 -
1692277550.7851784-CDS-M-pyrifera_M_contig122926:56..4251692277550.7851784-CDS-M-pyrifera_M_contig122926:56..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122926 57..425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.0466747-UTR-M-pyrifera_M_contig122926:425..4431622815748.0466747-UTR-M-pyrifera_M_contig122926:425..443Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122926 426..443 -
1692277550.7984536-UTR-M-pyrifera_M_contig122926:425..4431692277550.7984536-UTR-M-pyrifera_M_contig122926:425..443Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122926 426..443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122926.4706.1prot_M-pyrifera_M_contig122926.4706.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122926 57..425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122926.4706.1

>prot_M-pyrifera_M_contig122926.4706.1 ID=prot_M-pyrifera_M_contig122926.4706.1|Name=mRNA_M-pyrifera_M_contig122926.4706.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MLIAPIQRIPRYVLLVQVLKDNTFREHADYDDVCSALEKMRGAADTVDAA
KKRYDNMSKVFKIAERLGGDSSIVAPHRSYLSEAIFIRQAKYLNVADNEI
PVKELYVLLLFSDIIIVARPKAA
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mRNA from alignment at M-pyrifera_M_contig122926:57..443-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122926.4706.1 ID=mRNA_M-pyrifera_M_contig122926.4706.1|Name=mRNA_M-pyrifera_M_contig122926.4706.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig122926:57..443- (Macrocystis pyrifera P11B4 male)
AAGGAGGACTTGCCGTCGATGCTGATTGCACCGATCCAGCGCATCCCTCG CTACGTTCTCCTCGTCCAAGTACTGAAGGACAACACCTTCCGCGAGCACG CGGACTATGACGACGTGTGCTCTGCTCTGGAGAAGATGAGGGGGGCGGCA GACACAGTGGACGCTGCAAAGAAGCGGTACGACAACATGAGCAAGGTTTT CAAGATCGCCGAGCGCTTGGGAGGGGACTCCTCCATTGTTGCACCGCACA GGAGCTATCTCTCCGAGGCCATCTTCATCCGGCAGGCCAAGTACCTCAAC GTGGCCGACAACGAGATTCCTGTGAAGGAGCTCTACGTGCTCCTGCTCTT CTCCGACATCATCATCGTGGCTCGCCCCAAGGCGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122926:57..443-

>mRNA_M-pyrifera_M_contig122926.4706.1 ID=mRNA_M-pyrifera_M_contig122926.4706.1|Name=mRNA_M-pyrifera_M_contig122926.4706.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig122926:57..443- (Macrocystis pyrifera P11B4 male)
ATGCTGATTGCACCGATCCAGCGCATCCCTCGCTACGTTCTCCTCGTCCA
AGTACTGAAGGACAACACCTTCCGCGAGCACGCGGACTATGACGACGTGT
GCTCTGCTCTGGAGAAGATGAGGGGGGCGGCAGACACAGTGGACGCTGCA
AAGAAGCGGTACGACAACATGAGCAAGGTTTTCAAGATCGCCGAGCGCTT
GGGAGGGGACTCCTCCATTGTTGCACCGCACAGGAGCTATCTCTCCGAGG
CCATCTTCATCCGGCAGGCCAAGTACCTCAACGTGGCCGACAACGAGATT
CCTGTGAAGGAGCTCTACGTGCTCCTGCTCTTCTCCGACATCATCATCGT
GGCTCGCCCCAAGGCGGCCATGCTGATTGCACCGATCCAGCGCATCCCTC
GCTACGTTCTCCTCGTCCAAGTACTGAAGGACAACACCTTCCGCGAGCAC
GCGGACTATGACGACGTGTGCTCTGCTCTGGAGAAGATGAGGGGGGCGGC
AGACACAGTGGACGCTGCAAAGAAGCGGTACGACAACATGAGCAAGGTTT
TCAAGATCGCCGAGCGCTTGGGAGGGGACTCCTCCATTGTTGCACCGCAC
AGGAGCTATCTCTCCGAGGCCATCTTCATCCGGCAGGCCAAGTACCTCAA
CGTGGCCGACAACGAGATTCCTGTGAAGGAGCTCTACGTGCTCCTGCTCT
TCTCCGACATCATCATCGTGGCTCGCCCCAAGGCGGCC
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