mRNA_M-pyrifera_M_contig122699.4662.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122699.4662.1
Unique NamemRNA_M-pyrifera_M_contig122699.4662.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig122699.4662.1 vs. uniprot
Match: A0A6B1BN45_9BACT (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1BN45_9BACT)

HSP 1 Score: 129 bits (324), Expect = 1.110e-33
Identity = 69/171 (40.35%), Postives = 103/171 (60.23%), Query Frame = 1 
Query:    1 GHLNLIQHLAALQKGNLQKSIPEFQTMNPIEKEADYFAINFLAPKVAFKKVTQFQNFSFDSILKIGKHFGISILASAFRFVELTDLTCALISIDVSTGKVKYEKRSHEFEELGYAEYLYGKKVPPGTNIFDVLKSKPASFPHTDEVNLIDWYPDLKKKAICTESIMHLGYN 513
            GH+ + +H   L+   L +S  EFQ+ + IE+EADYFAI FLAPK AF+   +++ +  D+IL + +HFGIS  A+  RF+ELTDLTC L+  +   G ++YE+RS   +E    ++L  K+V   T  +D +         T  V+L DW+ DL  +   TES++ LGYN
Sbjct:   85 GHITIPEHRKILETEELHRSKSEFQSRDQIEREADYFAICFLAPKKAFQTAMKYKEYIKDTILGLSEHFGISSYAAVLRFIELTDLTCTLVVCN-EAGLIEYERRSDRMKETYKQDFLRKKQVKGTTLTYDYMDGHQEE--DTCTVSLNDWFDDLPIEIEATESVIELGYN 252
[Close]
BLAST of mRNA_M-pyrifera_M_contig122699.4662.1 vs. uniprot
Match: A0A3F3ICB2_9BACT (Peptidase_M78 domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3F3ICB2_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 1.280e-20
Identity = 53/174 (30.46%), Postives = 92/174 (52.87%), Query Frame = 1 
Query:    1 GHLNLIQHLA-ALQKGNLQKSIPEFQTMNPIEKEADYFAINFLAPKVAFKKVTQFQNFSFDSILKIGKHFGISILASAFRFVELTDLTCALISIDVSTGKVKYEKRSHEFEELGYAEYLYGKKVPPGTNIFDVLKSKPASFPHTDEVNLIDWYPDLKKKAICTESIMHLGYNNT 519
            GH++L +H    ++ G   + I EF++   +EKEAD FAINFLAP+  FKK+   + F+   I ++ +   IS  +  FRF+ELT   C+++ +D    K+ Y+ RS +   L     + G+++ P + +        +       ++L ++Y D K    C ES++   YN+T
Sbjct:   86 GHVSLFEHQEDVIKNGKRLELIDEFKSEETMEKEADSFAINFLAPESLFKKIAGGKFFNKYDIDQLSRTLNISFQSCVFRFLELTSKACSVVLVDNKDQKIIYDFRSKKMRRLNKHPSICGEQIIPNSFLSRFTYKNRSIDQKERIIDLSEYYQDYKAGMTCKESLIKFNYNST 259
[Close]
BLAST of mRNA_M-pyrifera_M_contig122699.4662.1 vs. uniprot
Match: A0A2H0UC24_9BACT (Peptidase_M78 domain-containing protein (Fragment) n=1 Tax=Candidatus Kaiserbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_51_14 TaxID=1974610 RepID=A0A2H0UC24_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 7.880e-11
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    1 GHLNLIQHLAALQKGNLQKSIPEFQTMNPIEKEADYFAINFLAPKVAFKKVTQFQNFSFDSILKIGKHFGISILASAFR 237
            GH+ + +H   L+K  L +S  EFQ+ +PIE++ADYFAI FLAP+  F+   +++ ++  +I ++  HF IS  A+  R
Sbjct:   68 GHVTIPEHRHLLEKDGLHRSRSEFQSRDPIERQADYFAICFLAPRKGFQTAMRYKEYTRKTIFELSDHFEISPYAAVLR 146
[Close]
BLAST of mRNA_M-pyrifera_M_contig122699.4662.1 vs. uniprot
Match: A0A5B8CH26_SPHSA (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Sphingobium fuliginis ATCC 27551 TaxID=1208342 RepID=A0A5B8CH26_SPHSA)

HSP 1 Score: 59.3 bits (142), Expect = 2.570e-7
Identity = 47/174 (27.01%), Postives = 76/174 (43.68%), Query Frame = 1 
Query:    1 GHLNLIQHLAALQKGNLQKSIPEFQTMNPIEKEADYFAINFLAPKVAFKKVTQFQNFSFDSILKIGKHFGISILASAFRFVELTDLTCALISIDVSTGK-VKYEKRSHEFEELGYAEYLYGKKVPPGTNIFDVLKSKPASFP----HTDEVNLIDWYPDLKKKAICTESIMHLG 507
            GH  +  H+ AL    +  S   F + NP E+EAD+FA   L P+ AF++           I  + K  G S+ A   R+  LT    A+IS   + G+ V +   S   +     ++L+     PG  + +   + P +           NL DW+ D ++   CTE ++ LG
Sbjct:   88 GHYCIGGHVDALLSAGMHVSRAGFNSNNPFEQEADFFAAALLMPEAAFRRAIDDHPVGLVGIETLHKECGTSLTACGIRYAGLTRNAVAVIS---TVGQSVDWCFMSGALKAAEGLKWLWKGAPVPGGTLTEAFNANPDNVRTGCNDAGVGNLRDWF-DTRRSYSCTEEVVGLG 257
[Close]
BLAST of mRNA_M-pyrifera_M_contig122699.4662.1 vs. uniprot
Match: A0A2E6LPN3_9GAMM (Peptidase_M78 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6LPN3_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 6.680e-5
Identity = 49/175 (28.00%), Postives = 82/175 (46.86%), Query Frame = 1 
Query:    1 GHLNLIQHLAALQK--GNLQKSIPEFQTMNPIEKEADYFAINFLAPKVAFKKVTQFQNFSFDSILKIGKHFGISILASAFRFVELTDLTCALISIDVSTG-KVKYEKRSHEFEEL-GYAEYLYGKKVP--PGTNIFDVLKSKPASFPHTDEVNLIDWYPDLKKKAICTESIMHLG 507
            GH  L  H  AL      + +S   +++ +  E+EAD+F+   L P   F +  +      D+I+ +      S+LA+A R++E TDL  A++   VS+G +++Y   S E +E  G      G  VP  P      V  +   +    +E +L DW+   +   + TE I+ LG
Sbjct:   88 GHYLLEGHAEALLPVGQEMHQSQAGYRSDDKYEREADHFSARLLMPNPMFAQAMRSAGEGLDAIMSLASLCETSLLATANRYIEETDLPMAMV---VSSGQRIEYAFLSDELKEFRGITWPKKGSAVPAVPTATFNRVDANVRNAQRENNESDLRDWFGGNRSVPL-TEEIVGLG 258
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122699.4662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6B1BN45_9BACT1.110e-3340.35ImmA/IrrE family metallo-endopeptidase n=1 Tax=Gem... [more]
A0A3F3ICB2_9BACT1.280e-2030.46Peptidase_M78 domain-containing protein n=1 Tax=Ba... [more]
A0A2H0UC24_9BACT7.880e-1139.24Peptidase_M78 domain-containing protein (Fragment)... [more]
A0A5B8CH26_SPHSA2.570e-727.01ImmA/IrrE family metallo-endopeptidase n=1 Tax=Sph... [more]
A0A2E6LPN3_9GAMM6.680e-528.00Peptidase_M78 domain-containing protein n=1 Tax=Ga... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122699contigM-pyrifera_M_contig122699:2..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.7
Seed ortholog evalue4.9e-08
Seed eggNOG ortholog491205.JARQ01000006_gene2712
Hectar predicted targeting categoryother localisation
EggNOG free text desc.IrrE N-terminal-like domain
EggNOG OGs1IIDB@117743,3ZSXT@59732,4NU5F@976,COG2856@1,COG2856@2
COG Functional cat.E
Best tax levelChryseobacterium
Best eggNOG OGNA|NA|NA
Exons1
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.8562503-CDS-M-pyrifera_M_contig122699:1..5201622815745.8562503-CDS-M-pyrifera_M_contig122699:1..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122699 2..520 +
1692277549.648366-CDS-M-pyrifera_M_contig122699:1..5201692277549.648366-CDS-M-pyrifera_M_contig122699:1..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122699 2..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122699.4662.1prot_M-pyrifera_M_contig122699.4662.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122699 2..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122699.4662.1

>prot_M-pyrifera_M_contig122699.4662.1 ID=prot_M-pyrifera_M_contig122699.4662.1|Name=mRNA_M-pyrifera_M_contig122699.4662.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
GHLNLIQHLAALQKGNLQKSIPEFQTMNPIEKEADYFAINFLAPKVAFKK
VTQFQNFSFDSILKIGKHFGISILASAFRFVELTDLTCALISIDVSTGKV
KYEKRSHEFEELGYAEYLYGKKVPPGTNIFDVLKSKPASFPHTDEVNLID
WYPDLKKKAICTESIMHLGYNNT
back to top

mRNA from alignment at M-pyrifera_M_contig122699:2..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122699.4662.1 ID=mRNA_M-pyrifera_M_contig122699.4662.1|Name=mRNA_M-pyrifera_M_contig122699.4662.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig122699:2..520+ (Macrocystis pyrifera P11B4 male)
GGCCATCTAAACTTAATTCAACATCTAGCTGCGTTGCAGAAAGGAAATTT
GCAAAAATCTATACCTGAATTTCAAACCATGAATCCCATTGAAAAGGAAG
CTGATTATTTTGCTATAAATTTCCTTGCTCCTAAAGTAGCTTTTAAAAAA
GTTACTCAGTTCCAAAACTTTAGTTTTGACTCAATTCTCAAAATTGGAAA
GCACTTTGGGATTTCTATTCTTGCTTCCGCATTTCGCTTTGTTGAACTCA
CCGATTTGACATGCGCATTAATTTCAATAGATGTATCCACTGGCAAGGTA
AAGTATGAAAAGCGTAGCCATGAGTTTGAAGAGTTAGGATATGCCGAGTA
TTTATATGGTAAAAAAGTTCCTCCAGGAACTAACATTTTTGATGTTCTAA
AATCAAAACCAGCATCATTTCCACATACTGATGAGGTAAACTTAATCGAC
TGGTACCCTGATTTAAAGAAAAAAGCAATTTGTACCGAATCAATAATGCA
TCTCGGATACAATAATACT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122699:2..520+

>mRNA_M-pyrifera_M_contig122699.4662.1 ID=mRNA_M-pyrifera_M_contig122699.4662.1|Name=mRNA_M-pyrifera_M_contig122699.4662.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig122699:2..520+ (Macrocystis pyrifera P11B4 male)
GGCCATCTAAACTTAATTCAACATCTAGCTGCGTTGCAGAAAGGAAATTT
GCAAAAATCTATACCTGAATTTCAAACCATGAATCCCATTGAAAAGGAAG
CTGATTATTTTGCTATAAATTTCCTTGCTCCTAAAGTAGCTTTTAAAAAA
GTTACTCAGTTCCAAAACTTTAGTTTTGACTCAATTCTCAAAATTGGAAA
GCACTTTGGGATTTCTATTCTTGCTTCCGCATTTCGCTTTGTTGAACTCA
CCGATTTGACATGCGCATTAATTTCAATAGATGTATCCACTGGCAAGGTA
AAGTATGAAAAGCGTAGCCATGAGTTTGAAGAGTTAGGATATGCCGAGTA
TTTATATGGTAAAAAAGTTCCTCCAGGAACTAACATTTTTGATGTTCTAA
AATCAAAACCAGCATCATTTCCACATACTGATGAGGTAAACTTAATCGAC
TGGTACCCTGATTTAAAGAAAAAAGCAATTTGTACCGAATCAATAATGCA
TCTCGGATACAATAATACTGGCCATCTAAACTTAATTCAACATCTAGCTG
CGTTGCAGAAAGGAAATTTGCAAAAATCTATACCTGAATTTCAAACCATG
AATCCCATTGAAAAGGAAGCTGATTATTTTGCTATAAATTTCCTTGCTCC
TAAAGTAGCTTTTAAAAAAGTTACTCAGTTCCAAAACTTTAGTTTTGACT
CAATTCTCAAAATTGGAAAGCACTTTGGGATTTCTATTCTTGCTTCCGCA
TTTCGCTTTGTTGAACTCACCGATTTGACATGCGCATTAATTTCAATAGA
TGTATCCACTGGCAAGGTAAAGTATGAAAAGCGTAGCCATGAGTTTGAAG
AGTTAGGATATGCCGAGTATTTATATGGTAAAAAAGTTCCTCCAGGAACT
AACATTTTTGATGTTCTAAAATCAAAACCAGCATCATTTCCACATACTGA
TGAGGTAAACTTAATCGACTGGTACCCTGATTTAAAGAAAAAAGCAATTT
GTACCGAATCAATAATGCATCTCGGATACAATAATACT
back to top