mRNA_M-pyrifera_M_contig122382.4613.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122382.4613.1
Unique NamemRNA_M-pyrifera_M_contig122382.4613.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122382.4613.1 vs. uniprot
Match: UPI00194FCEEF (universal stress protein n=1 Tax=Spirulina major TaxID=270636 RepID=UPI00194FCEEF)

HSP 1 Score: 47.8 bits (112), Expect = 3.890e-5
Identity = 23/54 (42.59%), Postives = 30/54 (55.56%), Query Frame = 1 
Query:    1 PGEHFLTYLEEYNPDLVVVGRRKNGGLARLLGGSFSEYIAKHWKGSVIVVPGSE 162
            PG       +++ PDL+VVGRR    +  L+ GS S YI      SV+VV GSE
Sbjct:  104 PGRRIQQIAKQWQPDLIVVGRRDRNNIQELMMGSVSNYIVHRASCSVLVVQGSE 157
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BLAST of mRNA_M-pyrifera_M_contig122382.4613.1 vs. uniprot
Match: A0A1H3YF47_9BACT (Nucleotide-binding universal stress protein, UspA family n=1 Tax=Arachidicoccus rhizosphaerae TaxID=551991 RepID=A0A1H3YF47_9BACT)

HSP 1 Score: 47.0 bits (110), Expect = 6.980e-5
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    1 PGEHFLTYLEEYNPDLVVVGRRKNGGLARLLGGSFSEYIAKHWKGSVIVVP 153
            P E  L  L+E++ +++VVG     GLA LL GS +EY+ +H K  V+VVP
Sbjct:   97 PREEILLKLKEWDAEVLVVGTHGRKGLAHLLLGSTAEYLVRHAKVPVLVVP 147
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BLAST of mRNA_M-pyrifera_M_contig122382.4613.1 vs. uniprot
Match: U7QJK7_9CYAN (Universal stress protein n=4 Tax=Lyngbya TaxID=28073 RepID=U7QJK7_9CYAN)

HSP 1 Score: 47.0 bits (110), Expect = 7.900e-5
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    1 PGEHFLTYLEEYNPDLVVVGRRKNGGLARLLGGSFSEYIAKHWKGSVIVV 150
            PG       +E+N DL+V+GRR   GL++L+ GS S Y+  H   SV++V
Sbjct:  107 PGRQICQVAQEWNADLIVMGRRGYSGLSQLILGSVSNYVLHHAHCSVLIV 156
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122382.4613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00194FCEEF3.890e-542.59universal stress protein n=1 Tax=Spirulina major T... [more]
A0A1H3YF47_9BACT6.980e-545.10Nucleotide-binding universal stress protein, UspA ... [more]
U7QJK7_9CYAN7.900e-542.00Universal stress protein n=4 Tax=Lyngbya TaxID=280... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122382contigM-pyrifera_M_contig122382:176..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.628816-CDS-M-pyrifera_M_contig122382:175..2611622815743.628816-CDS-M-pyrifera_M_contig122382:175..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122382 176..261 +
1692277548.5723565-CDS-M-pyrifera_M_contig122382:175..2611692277548.5723565-CDS-M-pyrifera_M_contig122382:175..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122382 176..261 +
1622815743.6389222-CDS-M-pyrifera_M_contig122382:312..3911622815743.6389222-CDS-M-pyrifera_M_contig122382:312..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122382 313..391 +
1692277548.5865705-CDS-M-pyrifera_M_contig122382:312..3911692277548.5865705-CDS-M-pyrifera_M_contig122382:312..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122382 313..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122382.4613.1prot_M-pyrifera_M_contig122382.4613.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122382 176..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122382.4613.1

>prot_M-pyrifera_M_contig122382.4613.1 ID=prot_M-pyrifera_M_contig122382.4613.1|Name=mRNA_M-pyrifera_M_contig122382.4613.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
PGEHFLTYLEEYNPDLVVVGRRKNGGLARLLGGSFSEYIAKHWKGSVIVV
PGSE*
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mRNA from alignment at M-pyrifera_M_contig122382:176..391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122382.4613.1 ID=mRNA_M-pyrifera_M_contig122382.4613.1|Name=mRNA_M-pyrifera_M_contig122382.4613.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig122382:176..391+ (Macrocystis pyrifera P11B4 male)
CCTGGGGAGCACTTCCTTACTTACTTGGAGGAATACAACCCTGACCTCGT
TGTTGTTGGCCGTCGCAAGAACGGAGGCCTTGCGAGGTAAGGCAATCGCG
CTGCTGTGCGGATCCACTCGTGCTGACCAGGTGCCAGGCTTCTCGGTGGC
TCCTTCAGCGAGTACATTGCCAAGCACTGGAAGGGGAGTGTGATTGTCGT
CCCTGGCAGTGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122382:176..391+

>mRNA_M-pyrifera_M_contig122382.4613.1 ID=mRNA_M-pyrifera_M_contig122382.4613.1|Name=mRNA_M-pyrifera_M_contig122382.4613.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig122382:176..391+ (Macrocystis pyrifera P11B4 male)
CCTGGGGAGCACTTCCTTACTTACTTGGAGGAATACAACCCTGACCTCGT
TGTTGTTGGCCGTCGCAAGAACGGAGGCCTTGCGAGCCTGGGGAGCACTT
CCTTACTTACTTGGAGGAATACAACCCTGACCTCGTTGTTGTTGGCCGTC
GCAAGAACGGAGGCCTTGCGAGGCTTCTCGGTGGCTCCTTCAGCGAGTAC
ATTGCCAAGCACTGGAAGGGGAGTGTGATTGTCGTCCCTGGCAGTGAATG
AGCTTCTCGGTGGCTCCTTCAGCGAGTACATTGCCAAGCACTGGAAGGGG
AGTGTGATTGTCGTCCCTGGCAGTGAATGA
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