mRNA_M-pyrifera_M_contig122366.4611.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122366.4611.1
Unique NamemRNA_M-pyrifera_M_contig122366.4611.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Match: UPI000FD7146A (DUF2306 domain-containing protein n=1 Tax=Agromyces sp. LHK192 TaxID=2498704 RepID=UPI000FD7146A)

HSP 1 Score: 58.9 bits (141), Expect = 2.980e-8
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  154 AFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLYLA 276
            AFYTHV+ G +AL+ G FQ W  LR RRP +HRW+GR YLA
Sbjct:   75 AFYTHVVAGGLALVLGPFQFWRGLRDRRPAVHRWIGRTYLA 115
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BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Match: A0A2A4N4Y6_9RHOB (Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2A4N4Y6_9RHOB)

HSP 1 Score: 57.0 bits (136), Expect = 5.880e-8
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:  142 EHWLAFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLY 270
            E  +AFY H++  P+AL    FQLW SLR RRP LHRW+GR Y
Sbjct:   10 ESQIAFYAHILLAPVALALTPFQLWRSLRMRRPALHRWVGRTY 52
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BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Match: A0A2A4QAV2_9RHOB (Uncharacterized protein (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2A4QAV2_9RHOB)

HSP 1 Score: 55.5 bits (132), Expect = 6.690e-8
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  154 AFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLY 270
            AF+ H+I  P+AL    FQLW  LRR+RP LHRW+GR+Y
Sbjct:   45 AFWAHIIGAPLALALAPFQLWQGLRRKRPTLHRWLGRIY 83
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BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Match: A0A221W4U4_9PSEU (Uncharacterized protein n=1 Tax=Actinoalloteichus hoggarensis TaxID=1470176 RepID=A0A221W4U4_9PSEU)

HSP 1 Score: 57.0 bits (136), Expect = 1.310e-7
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  145 HWLAFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLYL 273
            H+    +H++FG +AL+    QLWP+LRRRRP +HRW GRLY+
Sbjct:   77 HYPLLVSHIVFGTVALVTVCLQLWPALRRRRPAVHRWSGRLYV 119
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BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Match: A0A413RIS8_9CELL (DUF2306 domain-containing protein n=1 Tax=Cellulomonas rhizosphaerae TaxID=2293719 RepID=A0A413RIS8_9CELL)

HSP 1 Score: 56.6 bits (135), Expect = 1.810e-7
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  154 AFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLYLA 276
            AFY HV+ G IAL+ G FQ W  LRRRRP++HR +GR+YL 
Sbjct:   69 AFYVHVVAGGIALLVGPFQFWAGLRRRRPVVHRALGRVYLG 109
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BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Match: UPI001CDA40B8 (DUF2306 domain-containing protein n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=UPI001CDA40B8)

HSP 1 Score: 55.8 bits (133), Expect = 2.280e-7
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:  151 LAFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLY 270
            LA + H+I GP+AL    FQLW  LRRRRP LHRW+GR+Y
Sbjct:   44 LAAWAHIIGGPLALGLAPFQLWQGLRRRRPALHRWLGRVY 83
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BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Match: A0A1X4NTA5_9RHOB (Uncharacterized protein n=2 Tax=Marivita cryptomonadis TaxID=505252 RepID=A0A1X4NTA5_9RHOB)

HSP 1 Score: 55.8 bits (133), Expect = 2.440e-7
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:  151 LAFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLYLAC 279
            + F  HV   P+AL+AG+ Q  P LR RRP+LHRW GRLY  C
Sbjct:   45 MVFALHVTLAPVALVAGVLQFMPKLRARRPVLHRWTGRLYALC 87
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BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Match: A3JZP3_9RHOB (Uncharacterized protein n=2 Tax=Sagittula stellata TaxID=52603 RepID=A3JZP3_9RHOB)

HSP 1 Score: 55.5 bits (132), Expect = 3.320e-7
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:  154 AFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLY 270
            A Y H++  P+AL    FQ WPSLR RRP LHRW GR+Y
Sbjct:   46 ALYAHILLAPVALAVMPFQFWPSLRARRPALHRWTGRVY 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Match: A0A6M5UCX5_9MICO (DUF2306 domain-containing protein n=1 Tax=Cellulosimicrobium sp. BI34T TaxID=2587808 RepID=A0A6M5UCX5_9MICO)

HSP 1 Score: 55.5 bits (132), Expect = 4.560e-7
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  154 AFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLYLA 276
            AFY HV+ G +AL+    QLW  LRRRRP +HRW GR+Y+A
Sbjct:   70 AFYAHVVAGGVALVCAPLQLWAGLRRRRPGVHRWTGRVYVA 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Match: A0A3B0S7J2_9ZZZZ (Membrane protein, putative n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0S7J2_9ZZZZ)

HSP 1 Score: 54.7 bits (130), Expect = 7.590e-7
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:  139 REHWLAFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLYLA 276
            RE  LAF  HV   P+AL  G+ Q +P LR RRP LHRW GR Y+A
Sbjct:   53 RERRLAFLAHVTAAPLALGFGVLQFFPGLRARRPALHRWTGRFYVA 98
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122366.4611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000FD7146A2.980e-863.41DUF2306 domain-containing protein n=1 Tax=Agromyce... [more]
A0A2A4N4Y6_9RHOB5.880e-858.14Uncharacterized protein n=1 Tax=Rhodobacteraceae b... [more]
A0A2A4QAV2_9RHOB6.690e-858.97Uncharacterized protein (Fragment) n=1 Tax=Rhodoba... [more]
A0A221W4U4_9PSEU1.310e-753.49Uncharacterized protein n=1 Tax=Actinoalloteichus ... [more]
A0A413RIS8_9CELL1.810e-760.98DUF2306 domain-containing protein n=1 Tax=Cellulom... [more]
UPI001CDA40B82.280e-762.50DUF2306 domain-containing protein n=2 Tax=Rhodobac... [more]
A0A1X4NTA5_9RHOB2.440e-755.81Uncharacterized protein n=2 Tax=Marivita cryptomon... [more]
A3JZP3_9RHOB3.320e-758.97Uncharacterized protein n=2 Tax=Sagittula stellata... [more]
A0A6M5UCX5_9MICO4.560e-758.54DUF2306 domain-containing protein n=1 Tax=Cellulos... [more]
A0A3B0S7J2_9ZZZZ7.590e-756.52Membrane protein, putative n=1 Tax=hydrothermal ve... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122366contigM-pyrifera_M_contig122366:225..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.5639358-CDS-M-pyrifera_M_contig122366:224..5031622815743.5639358-CDS-M-pyrifera_M_contig122366:224..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122366 225..503 -
1692277548.5376952-CDS-M-pyrifera_M_contig122366:224..5031692277548.5376952-CDS-M-pyrifera_M_contig122366:224..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122366 225..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122366.4611.1prot_M-pyrifera_M_contig122366.4611.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122366 225..503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122366.4611.1

>prot_M-pyrifera_M_contig122366.4611.1 ID=prot_M-pyrifera_M_contig122366.4611.1|Name=mRNA_M-pyrifera_M_contig122366.4611.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
RWLSLTGLSNTGLLAKALATEYFPYTAWGAKDLSSFPLLEWDMWLFREHW
LAFYTHVIFGPIALMAGLFQLWPSLRRRRPLLHRWMGRLYLAC
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mRNA from alignment at M-pyrifera_M_contig122366:225..503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122366.4611.1 ID=mRNA_M-pyrifera_M_contig122366.4611.1|Name=mRNA_M-pyrifera_M_contig122366.4611.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig122366:225..503- (Macrocystis pyrifera P11B4 male)
CGATGGCTCTCGCTGACTGGGCTGAGCAACACTGGGCTCCTTGCCAAGGC
ACTGGCAACGGAATACTTCCCATACACAGCCTGGGGTGCAAAGGATCTCT
CCAGCTTCCCTCTTCTCGAATGGGACATGTGGCTCTTCCGCGAACACTGG
CTGGCATTCTACACCCATGTCATCTTCGGCCCCATTGCCCTTATGGCAGG
CTTGTTCCAGCTGTGGCCCTCCCTCAGGCGGCGGCGGCCGCTGCTGCACC
GCTGGATGGGGCGCCTCTACCTCGCTTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122366:225..503-

>mRNA_M-pyrifera_M_contig122366.4611.1 ID=mRNA_M-pyrifera_M_contig122366.4611.1|Name=mRNA_M-pyrifera_M_contig122366.4611.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig122366:225..503- (Macrocystis pyrifera P11B4 male)
CGATGGCTCTCGCTGACTGGGCTGAGCAACACTGGGCTCCTTGCCAAGGC
ACTGGCAACGGAATACTTCCCATACACAGCCTGGGGTGCAAAGGATCTCT
CCAGCTTCCCTCTTCTCGAATGGGACATGTGGCTCTTCCGCGAACACTGG
CTGGCATTCTACACCCATGTCATCTTCGGCCCCATTGCCCTTATGGCAGG
CTTGTTCCAGCTGTGGCCCTCCCTCAGGCGGCGGCGGCCGCTGCTGCACC
GCTGGATGGGGCGCCTCTACCTCGCTTGCCGATGGCTCTCGCTGACTGGG
CTGAGCAACACTGGGCTCCTTGCCAAGGCACTGGCAACGGAATACTTCCC
ATACACAGCCTGGGGTGCAAAGGATCTCTCCAGCTTCCCTCTTCTCGAAT
GGGACATGTGGCTCTTCCGCGAACACTGGCTGGCATTCTACACCCATGTC
ATCTTCGGCCCCATTGCCCTTATGGCAGGCTTGTTCCAGCTGTGGCCCTC
CCTCAGGCGGCGGCGGCCGCTGCTGCACCGCTGGATGGGGCGCCTCTACC
TCGCTTGC
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