mRNA_M-pyrifera_M_contig122194.4574.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122194.4574.1
Unique NamemRNA_M-pyrifera_M_contig122194.4574.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Match: A0A261C353_9PELO (Uncharacterized protein (Fragment) n=1 Tax=Caenorhabditis latens TaxID=1503980 RepID=A0A261C353_9PELO)

HSP 1 Score: 65.5 bits (158), Expect = 4.030e-10
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   85 NVVRELLKRRAAIDARLSRIARGGPLHRLDLRRA-EPLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAIAHEAA 312
            N V    KR A + AR++ + + G      L +  EP R KTHWD+++EEVKW+ATDF  E   KR VA+A+AH  A
Sbjct:  240 NNVERAAKREAHVLARIAELRKNGLWSNSRLPKCVEPERNKTHWDYLLEEVKWMATDFRAETNHKRRVAKAVAHAIA 316          
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Match: E3LWK6_CAERE (CRE-SSL-1 protein n=3 Tax=Caenorhabditis remanei TaxID=31234 RepID=E3LWK6_CAERE)

HSP 1 Score: 65.5 bits (158), Expect = 4.130e-10
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   85 NVVRELLKRRAAIDARLSRIARGGPLHRLDLRRA-EPLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAIAHEAA 312
            N V    KR A + AR++ + + G      L +  EP R KTHWD+++EEVKW+ATDF  E   KR VA+A+AH  A
Sbjct:  240 NNVERAAKREAHVLARIAELRKNGLWSNSRLPKCVEPERNKTHWDYLLEEVKWMATDFRAETNHKRRVAKAVAHAIA 316          
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Match: A0A7R9KE02_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9KE02_9ACAR)

HSP 1 Score: 63.2 bits (152), Expect = 2.690e-9
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   52 ASLRETLLRSANVVRELLKRRAAIDARLSRIARGGPLHRLDLRRA-EPLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAIA 300
            +S  +T L + + + E  K+ A +  R++ + + G      L +  EP+RRKTHWD+++EE++WLATDF  ER WK+A A+  A
Sbjct:  224 SSFYDTALGTQDQIVEKAKQEAHVVQRVAELRKNGLWSGRRLPKVQEPMRRKTHWDYLLEEMQWLATDFAQERKWKKAAAKKCA 307          
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Match: F6QNL7_CIOIN (Uncharacterized protein n=6 Tax=Ciona intestinalis TaxID=7719 RepID=F6QNL7_CIOIN)

HSP 1 Score: 62.8 bits (151), Expect = 3.580e-9
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   13 LSKREKDALRENSASLRETLLRSANVVRELLKRRAAIDARLSRIARGGPLHRLDLRRA-EPLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAI 297
            L++R K   R   + + E  + S   + E  K+ A +  R++ + + G   +  L +  EP R KTHWD+++EE++WLA DF  ER WKRA AR +
Sbjct:  163 LTQRLKRQSRNTLSDVYEDTIGSQEEILERAKQEAVVQRRVAELRKQGLWSQRRLPKVQEPPRNKTHWDYLLEEMRWLAADFAQERKWKRAAARKV 258          
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Match: A0A3N4J1R3_9PEZI (Vacuolar import and degradation protein 21 n=1 Tax=Choiromyces venosus 120613-1 TaxID=1336337 RepID=A0A3N4J1R3_9PEZI)

HSP 1 Score: 62.8 bits (151), Expect = 3.630e-9
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1
Query:  187 EPLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAIAHEAA 312
            EP RRK HWD+++EE KWL  DF GER WK A+AR  A EAA
Sbjct:  926 EPRRRKCHWDYLLEEAKWLRDDFKGERKWKIAMARLYAKEAA 967          
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Match: A0A0C2D994_9BILA (HSA domain-containing protein (Fragment) n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2D994_9BILA)

HSP 1 Score: 62.0 bits (149), Expect = 4.210e-9
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   91 VRELLKRRAAIDARLSRIARGG--PLHRLDLRRAEPLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAIA 300
            V +  K+ A +  R++ + R G     RL L   EP R KTHWD+++EEVKW+ATDF  ER +KR +AR IA
Sbjct:  187 VEKAAKQEAQVMTRIAELRRAGLWTASRLPLC-VEPPRNKTHWDYVLEEVKWMATDFRMERQFKRTIARKIA 257          
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Match: A0A7S1V0C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V0C4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.190e-9
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1
Query:  190 PLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAIAHEAADVVQ 324
            P RRKT WD+ MEE++WLATDF  ER WKR+VA+A++      VQ
Sbjct:    4 PRRRKTQWDYAMEEMRWLATDFVEERKWKRSVAKAVSCAVVTKVQ 48          
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Match: A0A821RK76_9NEOP (Hypothetical protein n=1 Tax=Pieris macdunnoughi TaxID=345717 RepID=A0A821RK76_9NEOP)

HSP 1 Score: 62.0 bits (149), Expect = 6.710e-9
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   82 ANVVRELLKRRAAIDARLSRIARGGPLHRLDLRRA-EPLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAIAHEAADVVQN 327
            A+ V E  +  AA+ AR++ +ARGG      L R  EP R KTHWD+++EE+ WLA DF  ER WK+  A+  A       Q+
Sbjct:  142 ADEVVEKARAEAAVAARIAALARGGLWAERRLPRVLEPPRPKTHWDYLLEEMAWLAQDFAHERKWKKQAAKKCARAVQKYFQD 224          
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Match: A0A292PQM1_9PEZI (Vacuolar import and degradation protein 21 n=1 Tax=Tuber aestivum TaxID=59557 RepID=A0A292PQM1_9PEZI)

HSP 1 Score: 62.0 bits (149), Expect = 6.750e-9
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 1
Query:  187 EPLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAIAHEA 309
            EP RRK HWD+++EE KWL  DF GER WK AVAR  A EA
Sbjct:  917 EPRRRKCHWDYLLEEAKWLRDDFKGERKWKIAVARYYAKEA 957          
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Match: UPI001E65FE1C (helicase domino isoform X1 n=2 Tax=Pieris brassicae TaxID=7116 RepID=UPI001E65FE1C)

HSP 1 Score: 62.0 bits (149), Expect = 6.760e-9
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   82 ANVVRELLKRRAAIDARLSRIARGGPLHRLDLRRA-EPLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAIAHEAADVVQN 327
            A+ V E  +  AA+ AR++ +ARGG      L R  EP R KTHWD+++EE+ WLA DF  ER WK+  A+  A       Q+
Sbjct:  133 ADEVVEKARAEAAVAARIAALARGGLWAERRLPRVLEPPRPKTHWDYLLEEMAWLAQDFAHERKWKKQAAKKCARAVQKYFQD 215          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122194.4574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A261C353_9PELO4.030e-1045.45Uncharacterized protein (Fragment) n=1 Tax=Caenorh... [more]
E3LWK6_CAERE4.130e-1045.45CRE-SSL-1 protein n=3 Tax=Caenorhabditis remanei T... [more]
A0A7R9KE02_9ACAR2.690e-939.29Hypothetical protein n=1 Tax=Medioppia subpectinat... [more]
F6QNL7_CIOIN3.580e-936.46Uncharacterized protein n=6 Tax=Ciona intestinalis... [more]
A0A3N4J1R3_9PEZI3.630e-964.29Vacuolar import and degradation protein 21 n=1 Tax... [more]
A0A0C2D994_9BILA4.210e-947.22HSA domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S1V0C4_9STRA5.190e-957.78Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A821RK76_9NEOP6.710e-942.17Hypothetical protein n=1 Tax=Pieris macdunnoughi T... [more]
A0A292PQM1_9PEZI6.750e-965.85Vacuolar import and degradation protein 21 n=1 Tax... [more]
UPI001E65FE1C6.760e-942.17helicase domino isoform X1 n=2 Tax=Pieris brassica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122194contigM-pyrifera_M_contig122194:73..399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score65.5
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog31234.CRE03110
Preferred namessl-1
KEGG koko:K11320
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0009996,GO:0010453,GO:0010454,GO:0042659,GO:0045595,GO:0045596,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0065007
EggNOG free text desc.HSA
EggNOG OGs1KU4N@119089,38C85@33154,3BH39@33208,3CUF7@33213,40BIT@6231,40TWN@6236,COG0553@1,KOG0391@2759
COG Functional cat.U
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.8653862-CDS-M-pyrifera_M_contig122194:72..3991622815741.8653862-CDS-M-pyrifera_M_contig122194:72..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122194 73..399 -
1692277547.8865972-CDS-M-pyrifera_M_contig122194:72..3991692277547.8865972-CDS-M-pyrifera_M_contig122194:72..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122194 73..399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122194.4574.1prot_M-pyrifera_M_contig122194.4574.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122194 73..399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122194.4574.1

>prot_M-pyrifera_M_contig122194.4574.1 ID=prot_M-pyrifera_M_contig122194.4574.1|Name=mRNA_M-pyrifera_M_contig122194.4574.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
DSLVLSKREKDALRENSASLRETLLRSANVVRELLKRRAAIDARLSRIAR
GGPLHRLDLRRAEPLRRKTHWDFMMEEVKWLATDFNGERMWKRAVARAIA
HEAADVVQN
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mRNA from alignment at M-pyrifera_M_contig122194:73..399-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122194.4574.1 ID=mRNA_M-pyrifera_M_contig122194.4574.1|Name=mRNA_M-pyrifera_M_contig122194.4574.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig122194:73..399- (Macrocystis pyrifera P11B4 male)
GATTCGTTGGTTTTGAGTAAGCGGGAGAAAGATGCATTGCGTGAAAATAG TGCGAGTCTTCGAGAGACTTTGTTGAGAAGTGCGAACGTTGTGCGAGAAT TGTTGAAGCGACGCGCAGCTATTGATGCACGATTGTCACGAATTGCAAGG GGAGGGCCTTTGCATCGTCTGGATTTGAGAAGAGCAGAACCTTTGAGACG AAAGACACATTGGGACTTTATGATGGAAGAAGTCAAGTGGCTGGCAACGG ATTTCAATGGAGAACGAATGTGGAAGAGAGCTGTGGCGAGAGCAATTGCA CATGAAGCTGCAGATGTTGTGCAGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122194:73..399-

>mRNA_M-pyrifera_M_contig122194.4574.1 ID=mRNA_M-pyrifera_M_contig122194.4574.1|Name=mRNA_M-pyrifera_M_contig122194.4574.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig122194:73..399- (Macrocystis pyrifera P11B4 male)
GATTCGTTGGTTTTGAGTAAGCGGGAGAAAGATGCATTGCGTGAAAATAG
TGCGAGTCTTCGAGAGACTTTGTTGAGAAGTGCGAACGTTGTGCGAGAAT
TGTTGAAGCGACGCGCAGCTATTGATGCACGATTGTCACGAATTGCAAGG
GGAGGGCCTTTGCATCGTCTGGATTTGAGAAGAGCAGAACCTTTGAGACG
AAAGACACATTGGGACTTTATGATGGAAGAAGTCAAGTGGCTGGCAACGG
ATTTCAATGGAGAACGAATGTGGAAGAGAGCTGTGGCGAGAGCAATTGCA
CATGAAGCTGCAGATGTTGTGCAGAACGATTCGTTGGTTTTGAGTAAGCG
GGAGAAAGATGCATTGCGTGAAAATAGTGCGAGTCTTCGAGAGACTTTGT
TGAGAAGTGCGAACGTTGTGCGAGAATTGTTGAAGCGACGCGCAGCTATT
GATGCACGATTGTCACGAATTGCAAGGGGAGGGCCTTTGCATCGTCTGGA
TTTGAGAAGAGCAGAACCTTTGAGACGAAAGACACATTGGGACTTTATGA
TGGAAGAAGTCAAGTGGCTGGCAACGGATTTCAATGGAGAACGAATGTGG
AAGAGAGCTGTGGCGAGAGCAATTGCACATGAAGCTGCAGATGTTGTGCA
GAAC
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