mRNA_M-pyrifera_M_contig122143.4559.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122143.4559.1
Unique NamemRNA_M-pyrifera_M_contig122143.4559.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig122143.4559.1 vs. uniprot
Match: A0A7S3NWQ3_EUPCR (Hypothetical protein (Fragment) n=2 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3NWQ3_EUPCR)

HSP 1 Score: 55.5 bits (132), Expect = 2.370e-6
Identity = 36/147 (24.49%), Postives = 72/147 (48.98%), Query Frame = 1 
Query:   13 PARPAYDRAGHEHFGSTVRRMVESQNKVDMDRHVAKFTAAGRELQRRAEWELLAERHLQTLRIDEQRRQRMQRVADERSFLHEWHQQGVEEWKLNVSIKRERERAGKRFRAQRRHHAGRKAAGERADSAADAADGIGEFEARMRATG 453
            P +  YD   H HF   ++ + ESQ  +++  H+ KF    ++ + +A  E   E  ++     + R  ++ ++     F+ EW ++G+E+WK N ++K+ERE+   +F          +   +   + ++  DGI EFE  ++  G
Sbjct:   59 PGKEKYDTQAHNHFKVQLQELNESQKNINLKNHLKKFEEIRQKQEAQAHREDEKEHEMKIKLKHDMRHSQIDKLQRNAGFMEEWLRKGIEDWKKNQNVKKEREKKQLQFEFTLTKKLESQTMTQINKAKSEVIDGIEEFENNLKRNG 205
[Close]
BLAST of mRNA_M-pyrifera_M_contig122143.4559.1 vs. uniprot
Match: A0A078A6K8_STYLE (Sperm flagellar protein 2 n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A6K8_STYLE)

HSP 1 Score: 52.8 bits (125), Expect = 4.620e-5
Identity = 37/145 (25.52%), Postives = 72/145 (49.66%), Query Frame = 1 
Query:   28 YDRAGHEHFGSTVRRMVESQNKVDMDRHVAKFTAAGRELQRRAEWELLAERHLQTLRIDEQRRQRMQRVADERSFLHEWHQQGVEEWKLNVSIKRERERAGKRFRAQRRHHAGRKAAGERADSAADAADGIGEFEARMRATGALP 462
            YD    + F + ++ + + Q  ++M++H+ KF    +  + +A+     E   +     E RR ++ ++     F+ EW Q+GVE+WK N SIK++RE+    F  ++          +  ++  +  DGIG+FE  ++  G  P
Sbjct:  137 YDEHAQKFFQNRLQELNKPQKVLNMEKHLDKFDQEKQRQEDQAKRFHSEEMDAKDKMRQETRRAQINKIQRNAGFMEEWQQKGVEDWKKNQSIKKDREKRQLEFEYKQAEKYNNLTVKKIDEANKEVNDGIGQFEQTLKNIGINP 281
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122143.4559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3NWQ3_EUPCR2.370e-624.49Hypothetical protein (Fragment) n=2 Tax=Euplotes c... [more]
A0A078A6K8_STYLE4.620e-525.52Sperm flagellar protein 2 n=1 Tax=Stylonychia lemn... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122143contigM-pyrifera_M_contig122143:3..464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.3017538-CDS-M-pyrifera_M_contig122143:2..4641622815741.3017538-CDS-M-pyrifera_M_contig122143:2..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122143 3..464 -
1692277547.6650734-CDS-M-pyrifera_M_contig122143:2..4641692277547.6650734-CDS-M-pyrifera_M_contig122143:2..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122143 3..464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122143.4559.1prot_M-pyrifera_M_contig122143.4559.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122143 3..464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122143.4559.1

>prot_M-pyrifera_M_contig122143.4559.1 ID=prot_M-pyrifera_M_contig122143.4559.1|Name=mRNA_M-pyrifera_M_contig122143.4559.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
MPSRPARPAYDRAGHEHFGSTVRRMVESQNKVDMDRHVAKFTAAGRELQR
RAEWELLAERHLQTLRIDEQRRQRMQRVADERSFLHEWHQQGVEEWKLNV
SIKRERERAGKRFRAQRRHHAGRKAAGERADSAADAADGIGEFEARMRAT
GALP
back to top

mRNA from alignment at M-pyrifera_M_contig122143:3..464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122143.4559.1 ID=mRNA_M-pyrifera_M_contig122143.4559.1|Name=mRNA_M-pyrifera_M_contig122143.4559.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig122143:3..464- (Macrocystis pyrifera P11B4 male)
ATGCCGTCGCGGCCTGCGCGCCCTGCGTACGACCGCGCCGGACACGAGCA
CTTTGGCTCCACCGTGCGCCGCATGGTGGAGTCGCAGAACAAGGTGGACA
TGGACCGGCACGTGGCCAAGTTCACCGCCGCAGGCCGCGAGCTGCAGCGC
CGCGCGGAGTGGGAGCTGCTCGCCGAGCGTCACCTGCAGACGCTGCGCAT
CGACGAACAGCGTCGCCAGCGCATGCAGCGCGTCGCCGACGAGCGATCCT
TCCTGCACGAGTGGCACCAGCAGGGCGTCGAGGAGTGGAAGCTCAACGTG
TCCATCAAGCGAGAGCGCGAGCGCGCGGGCAAACGCTTCCGCGCCCAGCG
CCGCCACCACGCCGGCCGCAAGGCAGCCGGCGAGCGCGCGGATTCCGCGG
CGGACGCGGCGGATGGCATCGGCGAATTCGAAGCACGCATGCGCGCCACC
GGCGCGCTGCCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122143:3..464-

>mRNA_M-pyrifera_M_contig122143.4559.1 ID=mRNA_M-pyrifera_M_contig122143.4559.1|Name=mRNA_M-pyrifera_M_contig122143.4559.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig122143:3..464- (Macrocystis pyrifera P11B4 male)
ATGCCGTCGCGGCCTGCGCGCCCTGCGTACGACCGCGCCGGACACGAGCA
CTTTGGCTCCACCGTGCGCCGCATGGTGGAGTCGCAGAACAAGGTGGACA
TGGACCGGCACGTGGCCAAGTTCACCGCCGCAGGCCGCGAGCTGCAGCGC
CGCGCGGAGTGGGAGCTGCTCGCCGAGCGTCACCTGCAGACGCTGCGCAT
CGACGAACAGCGTCGCCAGCGCATGCAGCGCGTCGCCGACGAGCGATCCT
TCCTGCACGAGTGGCACCAGCAGGGCGTCGAGGAGTGGAAGCTCAACGTG
TCCATCAAGCGAGAGCGCGAGCGCGCGGGCAAACGCTTCCGCGCCCAGCG
CCGCCACCACGCCGGCCGCAAGGCAGCCGGCGAGCGCGCGGATTCCGCGG
CGGACGCGGCGGATGGCATCGGCGAATTCGAAGCACGCATGCGCGCCACC
GGCGCGCTGCCGATGCCGTCGCGGCCTGCGCGCCCTGCGTACGACCGCGC
CGGACACGAGCACTTTGGCTCCACCGTGCGCCGCATGGTGGAGTCGCAGA
ACAAGGTGGACATGGACCGGCACGTGGCCAAGTTCACCGCCGCAGGCCGC
GAGCTGCAGCGCCGCGCGGAGTGGGAGCTGCTCGCCGAGCGTCACCTGCA
GACGCTGCGCATCGACGAACAGCGTCGCCAGCGCATGCAGCGCGTCGCCG
ACGAGCGATCCTTCCTGCACGAGTGGCACCAGCAGGGCGTCGAGGAGTGG
AAGCTCAACGTGTCCATCAAGCGAGAGCGCGAGCGCGCGGGCAAACGCTT
CCGCGCCCAGCGCCGCCACCACGCCGGCCGCAAGGCAGCCGGCGAGCGCG
CGGATTCCGCGGCGGACGCGGCGGATGGCATCGGCGAATTCGAAGCACGC
ATGCGCGCCACCGGCGCGCTGCCG
back to top