mRNA_M-pyrifera_M_contig122134.4553.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122134.4553.1
Unique NamemRNA_M-pyrifera_M_contig122134.4553.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Match: A0A8C8M751_ONCTS (E3 ubiquitin-protein ligase listerin n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8M751_ONCTS)

HSP 1 Score: 148 bits (374), Expect = 9.560e-43
Identity = 66/133 (49.62%), Postives = 94/133 (70.68%), Query Frame = 1 
Query:   16 AREVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWWRRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQATDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR 414
            AREV+A Y +D+  + +VI LP  YPL  + +E    +G+    WR W+LQL  S++   QNG +++ + +W+ NVDK  +GVE C+IC++V+  ++ SLP+K C TCK KFHSACLY+WF SSNKSTCP+CR
Sbjct:   58 AREVIATYSVDDIFIELVIQLPQNYPLGSITVESGRRVGVAVQQWRNWMLQL--STYLTHQNGSIMEGLALWKTNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCR 188
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BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Match: A0A0A9ANH0_ARUDO (E3 ubiquitin-protein ligase listerin n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9ANH0_ARUDO)

HSP 1 Score: 149 bits (375), Expect = 2.730e-42
Identity = 69/136 (50.74%), Postives = 93/136 (68.38%), Query Frame = 1 
Query:    7 NIRAREVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWWRRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQATDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR 414
            N  A E+VA YK +E  + +VI LP CYPL+HV +E   +LG+ E   R+WLL L  +S    QNG + +AI  W+ N DKE +GVE C ICY+++  ++ SLPR  C TC+ KFH ACLY+WF +SNKSTCP+C+
Sbjct:  105 NRSAYEIVATYKKEETGIDLVIRLPNCYPLRHVDVECTRSLGISEVKCRKWLLSL--TSFVRNQNGAIAEAIRTWKSNFDKEFEGVEECPICYSILHTSNHSLPRLACKTCRHKFHGACLYKWFSTSNKSTCPLCQ 238
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BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Match: A0A493TZN0_ANAPP (E3 ubiquitin-protein ligase listerin n=4 Tax=Aves TaxID=8782 RepID=A0A493TZN0_ANAPP)

HSP 1 Score: 149 bits (376), Expect = 3.490e-42
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 1 
Query:   16 AREVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWWRRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQATDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR 414
            AREV+A Y +D+  + ++I LP  YPL  + +E    +G+    WR W+LQL  S++   QNG +++ + +W+ NVDK  +GVE C+IC++V+  ++ SLP+K C TCK KFHSACLY+WF SSNKSTCP+CR
Sbjct:  129 AREVIATYSVDDIFIELIIQLPTNYPLGSITVESGKRVGVAVQQWRNWMLQL--STYLTHQNGSIMEGLSLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCR 259
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BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Match: A0A3B3ZXE1_9GOBI (E3 ubiquitin-protein ligase listerin n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B3ZXE1_9GOBI)

HSP 1 Score: 148 bits (374), Expect = 5.640e-42
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 1 
Query:   16 AREVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWWRRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQATDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR 414
            AREV+A Y +D+  + +VI LP  YPL  + +E    +G+    WR W+LQL  S++   QNG +++ + +W+ NVDK  +G+E C+IC++V+  ++ SLP+K C TCK KFHSACLY+WF SSNKSTCP+CR
Sbjct:  121 AREVIATYSVDDICIELVIQLPQNYPLGSITVESGKRVGVSVQQWRNWMLQL--STYLTHQNGSIMEGLALWKNNVDKRFEGIEDCMICFSVIHGSNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCR 251
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BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Match: A0A3B3CAU5_ORYME (E3 ubiquitin-protein ligase listerin n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3CAU5_ORYME)

HSP 1 Score: 148 bits (373), Expect = 8.190e-42
Identity = 65/133 (48.87%), Postives = 95/133 (71.43%), Query Frame = 1 
Query:   16 AREVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWWRRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQATDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR 414
            AREV+A Y +D+  + +VI LP  +PL  +A+E    +G+    WR W+LQL  S++   QNG +++ + +W+ NVDK  +G+E C+IC++V+  ++ SLP+K C TCK KFHSACLY+WF SSNKSTCP+CR
Sbjct:  122 AREVIATYSVDDIFIELVIQLPQNHPLGSIAVESGRRVGVAVQQWRNWMLQL--STYLTHQNGSIMEGLALWKNNVDKRFEGIEDCMICFSVIHGSNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCR 252
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BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Match: UPI0019001460 (E3 ubiquitin-protein ligase listerin-like n=1 Tax=Salvelinus namaycush TaxID=8040 RepID=UPI0019001460)

HSP 1 Score: 148 bits (374), Expect = 3.330e-41
Identity = 66/133 (49.62%), Postives = 94/133 (70.68%), Query Frame = 1 
Query:   16 AREVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWWRRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQATDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR 414
            AREV+A Y +D+  + +VI LP  YPL  + +E    +G+    WR W+LQL  S++   QNG +++ + +W+ NVDK  +GVE C+IC++V+  ++ SLP+K C TCK KFHSACLY+WF SSNKSTCP+CR
Sbjct:  192 AREVIATYSVDDIFIELVIQLPQNYPLGSITVESGRRVGVAVQQWRNWMLQL--STYLTHQNGSIMEGLVLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCR 322
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BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Match: A0A7M5VBN4_9CNID (E3 ubiquitin-protein ligase listerin n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5VBN4_9CNID)

HSP 1 Score: 140 bits (352), Expect = 4.640e-40
Identity = 61/138 (44.20%), Postives = 94/138 (68.12%), Query Frame = 1 
Query:    1 RTNIRAREVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWWRRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQATDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR 414
            +T   ARE+VA Y ++E  + +V+ L L +PL  V ++    +G+  + WR+W+LQL  ++    QNG ++D + +W++NVDK  +GVE C+IC++++  T+ SLP   C TCK KFH ACLY+WF +S KSTCP+CR
Sbjct:    4 KTRPGAREIVAVYSIEEISMELVVKLSLNHPLTPVVVDCGKRIGVSNALWRQWMLQL--TTFLSFQNGTILDGLTLWKRNVDKRFEGVEECMICFSIIHGTNYSLPTIGCKTCKKKFHPACLYKWFSTSGKSTCPLCR 139
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BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Match: A0A8C6RHI8_NANGA (E3 ubiquitin-protein ligase listerin n=4 Tax=Nannospalax galili TaxID=1026970 RepID=A0A8C6RHI8_NANGA)

HSP 1 Score: 144 bits (362), Expect = 4.800e-40
Identity = 63/132 (47.73%), Postives = 92/132 (69.70%), Query Frame = 1 
Query:   19 REVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWWRRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQATDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR 414
            REV+A Y +++  + ++I LP  YPL  + +E    +G+    WR W+LQL  S++   QNG +++ + +W+ NVDK  +GVE C+IC++V+   + SLP+K C TCK KFHSACLY+WF SSNKSTCP+CR
Sbjct:  133 REVMATYTIEDIVIELIIQLPSNYPLGSITVESGKRIGVAVQQWRNWMLQL--STYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCR 262
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BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Match: A0A7C9AY02_OPUST (E3 ubiquitin-protein ligase listerin n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AY02_OPUST)

HSP 1 Score: 142 bits (358), Expect = 5.150e-40
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:   16 AREVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWWRRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQATDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR 414
            A EV+A Y  DE  + +VI LP  YPL+ V +E   +LG+ E   R+WLL +        QNG L +AI +W+ N DKE +GVE C ICY+V+  T+ SLPR  C TCK KFH+ACLY+WF +S+KSTCP+C+
Sbjct:   84 ANEVIATYTKDETGMDLVIRLPASYPLRPVDVECTRSLGISEVKQRKWLLSMMAFVRN--QNGALAEAIMIWKSNFDKEFEGVEECPICYSVIHTTNHSLPRLACKTCKHKFHAACLYKWFSTSHKSTCPLCQ 214
[Close]
BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Match: A0A8C5KNY0_JACJA (E3 ubiquitin-protein ligase listerin n=2 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5KNY0_JACJA)

HSP 1 Score: 143 bits (361), Expect = 6.780e-40
Identity = 63/132 (47.73%), Postives = 92/132 (69.70%), Query Frame = 1 
Query:   19 REVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWWRRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQATDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR 414
            REV+A Y +++  + ++I LP  YPL  + +E    +G+    WR W+LQL  S++   QNG +++ + +W+ NVDK  +GVE C+IC++V+   + SLP+K C TCK KFHSACLY+WF SSNKSTCP+CR
Sbjct:  133 REVMATYTIEDIVIELIIQLPSNYPLGSITVESGKRVGVAVQQWRNWMLQL--STYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCR 262
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122134.4553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C8M751_ONCTS9.560e-4349.62E3 ubiquitin-protein ligase listerin n=1 Tax=Oncor... [more]
A0A0A9ANH0_ARUDO2.730e-4250.74E3 ubiquitin-protein ligase listerin n=1 Tax=Arund... [more]
A0A493TZN0_ANAPP3.490e-4248.87E3 ubiquitin-protein ligase listerin n=4 Tax=Aves ... [more]
A0A3B3ZXE1_9GOBI5.640e-4248.87E3 ubiquitin-protein ligase listerin n=1 Tax=Perio... [more]
A0A3B3CAU5_ORYME8.190e-4248.87E3 ubiquitin-protein ligase listerin n=1 Tax=Oryzi... [more]
UPI00190014603.330e-4149.62E3 ubiquitin-protein ligase listerin-like n=1 Tax=... [more]
A0A7M5VBN4_9CNID4.640e-4044.20E3 ubiquitin-protein ligase listerin n=1 Tax=Clyti... [more]
A0A8C6RHI8_NANGA4.800e-4047.73E3 ubiquitin-protein ligase listerin n=4 Tax=Nanno... [more]
A0A7C9AY02_OPUST5.150e-4050.38E3 ubiquitin-protein ligase listerin n=1 Tax=Opunt... [more]
A0A8C5KNY0_JACJA6.780e-4047.73E3 ubiquitin-protein ligase listerin n=2 Tax=Jacul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122134contigM-pyrifera_M_contig122134:2..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score151.0
Seed ortholog evalue4.1e-34
Seed eggNOG ortholog3218.PP1S39_126V6.1
KEGG koko:K22377
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.E3 ubiquitin-protein ligase
EggNOG OGs37RZJ@33090,3GFEM@35493,COG5219@1,KOG0803@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons3
Model size414
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122134.4553.1prot_M-pyrifera_M_contig122134.4553.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122134 2..530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.0535424-CDS-M-pyrifera_M_contig122134:1..2431622815741.0535424-CDS-M-pyrifera_M_contig122134:1..243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122134 2..243 -
1692277547.5550163-CDS-M-pyrifera_M_contig122134:1..2431692277547.5550163-CDS-M-pyrifera_M_contig122134:1..243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122134 2..243 -
1622815741.0659778-CDS-M-pyrifera_M_contig122134:296..4021622815741.0659778-CDS-M-pyrifera_M_contig122134:296..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122134 297..402 -
1692277547.5679886-CDS-M-pyrifera_M_contig122134:296..4021692277547.5679886-CDS-M-pyrifera_M_contig122134:296..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122134 297..402 -
1622815741.0766711-CDS-M-pyrifera_M_contig122134:464..5301622815741.0766711-CDS-M-pyrifera_M_contig122134:464..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122134 465..530 -
1692277547.5775993-CDS-M-pyrifera_M_contig122134:464..5301692277547.5775993-CDS-M-pyrifera_M_contig122134:464..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122134 465..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122134.4553.1

>prot_M-pyrifera_M_contig122134.4553.1 ID=prot_M-pyrifera_M_contig122134.4553.1|Name=mRNA_M-pyrifera_M_contig122134.4553.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
RTNIRAREVVAQYKMDECEVTMVIVLPLCYPLQHVAIEFVNALGLKESWW
RRWLLQLQRSSHQPLQNGCLIDAIHVWRKNVDKELDGVEPCLICYAVVQA
TDQSLPRKTCFTCKTKFHSACLYRWFHSSNKSTCPMCR
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mRNA from alignment at M-pyrifera_M_contig122134:2..530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122134.4553.1 ID=mRNA_M-pyrifera_M_contig122134.4553.1|Name=mRNA_M-pyrifera_M_contig122134.4553.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=529bp|location=Sequence derived from alignment at M-pyrifera_M_contig122134:2..530- (Macrocystis pyrifera P11B4 male)
CGCACCAACATCCGAGCTCGCGAGGTAGTTGCTCAGTACAAGATGGACGA
GTGTGAAGTCACCATGGTAAGGAGAATGAGAGCAGAGACGCCCTGCTTGA
CCATTGCTAACTACTATTCCACGCTCAGGTTATCGTTCTGCCGCTGTGCT
ATCCACTGCAGCACGTTGCGATCGAGTTTGTGAACGCTTTGGGACTCAAG
GAGAGCTGGTGGAGGCGGTGGCTGCTACAGCTGCGTGCCCTTCTGGGCCA
GCAGGTAAGAACTGCTTGCGAGGAACACCAGGCGCAGAGCGATCCTCACA
CCAACCACTGCAGAACGGTTGCTTGATTGATGCAATCCACGTATGGAGGA
AGAACGTAGACAAGGAACTGGACGGTGTTGAACCGTGTCTCATCTGCTAC
GCTGTGGTGCAAGCCACTGACCAAAGCCTGCCTCGCAAGACTTGCTTCAC
CTGCAAAACAAAGTTCCACTCGGCGTGTCTCTACAGGTGGTTCCATTCCT
CGAACAAATCCACGTGCCCAATGTGTAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122134:2..530-

>mRNA_M-pyrifera_M_contig122134.4553.1 ID=mRNA_M-pyrifera_M_contig122134.4553.1|Name=mRNA_M-pyrifera_M_contig122134.4553.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig122134:2..530- (Macrocystis pyrifera P11B4 male)
CGCACCAACATCCGAGCTCGCGAGGTAGTTGCTCAGTACAAGATGGACGA
GTGTGAAGTCACCATGCGCACCAACATCCGAGCTCGCGAGGTAGTTGCTC
AGTACAAGATGGACGAGTGTGAAGTCACCATGGTTATCGTTCTGCCGCTG
TGCTATCCACTGCAGCACGTTGCGATCGAGTTTGTGAACGCTTTGGGACT
CAAGGAGAGCTGGTGGAGGCGGTGGCTGCTACAGCTGCGTTATCGTTCTG
CCGCTGTGCTATCCACTGCAGCACGTTGCGATCGAGTTTGTGAACGCTTT
GGGACTCAAGGAGAGCTGGTGGAGGCGGTGGCTGCTACAGCTGCAGCGAT
CCTCACACCAACCACTGCAGAACGGTTGCTTGATTGATGCAATCCACGTA
TGGAGGAAGAACGTAGACAAGGAACTGGACGGTGTTGAACCGTGTCTCAT
CTGCTACGCTGTGGTGCAAGCCACTGACCAAAGCCTGCCTCGCAAGACTT
GCTTCACCTGCAAAACAAAGTTCCACTCGGCGTGTCTCTACAGGTGGTTC
CATTCCTCGAACAAATCCACGTGCCCAATGTGTAGGAGCGATCCTCACAC
CAACCACTGCAGAACGGTTGCTTGATTGATGCAATCCACGTATGGAGGAA
GAACGTAGACAAGGAACTGGACGGTGTTGAACCGTGTCTCATCTGCTACG
CTGTGGTGCAAGCCACTGACCAAAGCCTGCCTCGCAAGACTTGCTTCACC
TGCAAAACAAAGTTCCACTCGGCGTGTCTCTACAGGTGGTTCCATTCCTC
GAACAAATCCACGTGCCCAATGTGTAGG
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